Wall clock time and date at job start Tue Mar 31 2020 15:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86803 * 120.00150 * 2 1 4 4 H 1.48503 * 109.46972 * 240.00226 * 3 2 1 5 5 H 1.48504 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47184 * 120.00102 * 3 2 1 7 7 C 1.38925 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00042 * 208.45060 * 7 2 1 9 9 N 1.37079 * 119.99714 * 28.44897 * 7 2 1 10 10 C 1.34771 * 119.99976 * 48.03948 * 9 7 2 11 11 O 1.21612 * 120.00295 * 5.55654 * 10 9 7 12 12 C 1.47376 * 120.00066 * 185.55608 * 10 9 7 13 13 C 1.37981 * 126.76138 * 20.92907 * 12 10 9 14 14 O 1.33606 * 108.38073 * 179.97438 * 13 12 10 15 15 C 1.34897 * 109.90345 * 0.02562 * 14 13 12 16 16 C 1.41673 * 125.67813 * 180.02562 * 15 14 13 17 17 C 1.35662 * 120.00096 * 38.69286 * 16 15 14 18 18 C 1.41368 * 120.00160 * 10.46119 * 17 16 15 19 19 O 1.21695 * 119.99897 * 6.56184 * 18 17 16 20 20 O 1.34987 * 120.00122 * 186.55130 * 18 17 16 21 21 C 1.36504 * 108.64666 * 359.71952 * 15 14 13 22 22 C 1.39338 * 119.99766 * 228.03414 * 9 7 2 23 23 C 1.39081 * 119.70002 * 225.94454 * 22 9 7 24 24 C 1.38377 * 119.09817 * 179.74695 * 23 22 9 25 25 C 1.38833 * 118.48940 * 0.50061 * 24 23 22 26 26 C 1.38145 * 119.31747 * 359.47784 * 25 24 23 27 27 N 1.31872 * 120.85500 * 0.27997 * 26 25 24 28 28 H 0.97006 * 119.99968 * 4.96650 * 1 2 3 29 29 H 1.07994 * 125.81047 * 359.96437 * 13 12 10 30 30 H 1.07997 * 120.00054 * 218.69958 * 16 15 14 31 31 H 1.08003 * 119.99697 * 190.46396 * 17 16 15 32 32 H 0.96701 * 113.99719 * 180.02562 * 20 18 17 33 33 H 1.08001 * 126.70247 * 180.27435 * 21 15 14 34 34 H 1.08005 * 120.45611 * 0.02562 * 23 22 9 35 35 H 1.08001 * 120.75728 * 180.27644 * 24 23 22 36 36 H 1.08003 * 120.34065 * 179.75156 * 25 24 23 37 37 H 1.08009 * 119.57115 * 180.29662 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0087 -1.2031 -0.0005 8 1 2.9908 -1.2598 0.4450 9 7 1.4474 -2.3183 -0.5666 10 6 0.8945 -2.2456 -1.7935 11 8 0.9822 -1.2194 -2.4402 12 6 0.1836 -3.4097 -2.3516 13 6 -0.3504 -4.4677 -1.6451 14 8 -0.9108 -5.3143 -2.5136 15 6 -0.7624 -4.8477 -3.7706 16 6 -1.2312 -5.4812 -4.9479 17 6 -2.4343 -6.1081 -4.9478 18 6 -3.3162 -5.9451 -3.8550 19 8 -3.0504 -5.1512 -2.9718 20 8 -4.4532 -6.6698 -3.7914 21 6 -0.0915 -3.6600 -3.7189 22 6 1.4486 -3.5270 0.1266 23 6 1.8164 -4.6971 -0.5292 24 6 1.8182 -5.8897 0.1725 25 6 1.4406 -5.8727 1.5084 26 6 1.0874 -4.6735 2.0962 27 7 1.0998 -3.5513 1.4037 28 1 -0.4850 0.8369 -0.0727 29 1 -0.3204 -4.5908 -0.5726 30 1 -0.6307 -5.4652 -5.8454 31 1 -2.7183 -6.7317 -5.7826 32 1 -4.9914 -6.4892 -3.0086 33 1 0.1791 -3.0345 -4.5567 34 1 2.1011 -4.6745 -1.5708 35 1 2.1035 -6.8134 -0.3090 36 1 1.4274 -6.7869 2.0833 37 1 0.7975 -4.6547 3.1365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:16 Heat of formation + Delta-G solvation = -10.478354 kcal Electronic energy + Delta-G solvation = -27948.731051 eV Core-core repulsion = 23853.350193 eV Total energy + Delta-G solvation = -4095.380858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.41426 -40.25028 -39.88884 -38.04451 -36.23126 -34.57862 -34.25618 -32.97004 -31.96580 -31.75452 -29.42627 -28.86805 -25.55635 -24.87152 -23.33890 -22.79030 -21.94074 -21.35655 -20.30725 -19.05881 -18.32345 -17.68149 -17.50849 -16.21579 -16.11197 -15.86820 -15.62964 -15.55011 -15.26895 -14.67329 -14.37652 -14.22945 -13.96460 -13.86805 -13.34631 -13.08563 -12.85547 -12.69575 -12.53719 -12.32121 -12.06345 -11.68563 -11.54797 -11.44017 -10.98755 -10.78525 -10.55792 -10.38178 -10.24400 -9.47420 -9.40242 -9.13338 -8.86329 -8.65608 -8.53996 -7.81961 -7.27256 -6.35921 -4.08891 0.37765 1.50980 1.84107 2.15369 2.54031 3.04248 3.26952 3.30845 3.34755 3.36631 3.40266 4.00145 4.20209 4.44218 4.54303 4.73487 5.00812 5.08172 5.17307 5.24815 5.26912 5.29383 5.34269 5.54477 5.59828 5.72216 5.83778 5.88639 6.08589 6.18183 6.24302 6.31611 6.42860 6.54323 6.63690 6.67831 7.15865 7.29981 7.50294 7.89545 8.04544 8.42024 8.79038 8.94900 9.32578 9.78589 10.69979 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.004682 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.861618 B = 5979.530412 C = 7220.214879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.345 4.345 8 H 0.089 0.911 9 N -0.382 5.382 10 C 0.572 3.428 11 O -0.513 6.513 12 C -0.225 4.225 13 C 0.052 3.948 14 O -0.135 6.135 15 C -0.044 4.044 16 C 0.049 3.951 17 C -0.218 4.218 18 C 0.498 3.502 19 O -0.493 6.493 20 O -0.515 6.515 21 C -0.102 4.102 22 C 0.356 3.644 23 C -0.216 4.216 24 C -0.064 4.064 25 C -0.231 4.231 26 C 0.120 3.880 27 N -0.483 5.483 28 H 0.271 0.729 29 H 0.207 0.793 30 H 0.163 0.837 31 H 0.146 0.854 32 H 0.406 0.594 33 H 0.158 0.842 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -15.571 -6.413 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.129 4.129 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.470 4.470 8 H 0.106 0.894 9 N -0.096 5.096 10 C 0.362 3.638 11 O -0.389 6.389 12 C -0.230 4.230 13 C -0.021 4.021 14 O -0.029 6.029 15 C -0.092 4.092 16 C 0.030 3.970 17 C -0.237 4.237 18 C 0.344 3.656 19 O -0.383 6.383 20 O -0.325 6.325 21 C -0.122 4.122 22 C 0.127 3.873 23 C -0.240 4.240 24 C -0.089 4.089 25 C -0.253 4.253 26 C -0.039 4.039 27 N -0.197 5.197 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.180 0.820 31 H 0.164 0.836 32 H 0.263 0.737 33 H 0.176 0.824 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.188 -14.139 -6.442 15.861 hybrid contribution 0.090 0.218 0.304 0.385 sum -3.098 -13.921 -6.138 15.526 Atomic orbital electron populations 1.70031 1.06975 1.28968 1.39294 1.25352 0.94615 1.00283 0.92622 0.86232 0.79711 0.81058 0.78946 1.19328 1.20959 1.19867 1.18989 0.99818 0.85263 1.42915 0.89381 1.40992 1.50387 1.06738 1.11438 1.17206 0.80141 0.85945 0.80540 1.90622 1.58647 1.31071 1.58516 1.20931 1.09014 0.98829 0.94210 1.25444 0.93275 0.88199 0.95204 1.84056 1.59434 1.44427 1.14937 1.19043 1.07724 0.98353 0.84129 1.20802 0.93499 0.88546 0.94121 1.21345 0.94988 1.07131 1.00206 1.19704 0.80917 0.78714 0.86309 1.91083 1.73969 1.34373 1.38838 1.85053 1.34374 1.63118 1.49996 1.21889 0.97781 0.95616 0.96916 1.19290 0.91673 0.87132 0.89215 1.21908 1.06940 0.93253 1.01863 1.21221 0.96429 0.97275 0.94018 1.21827 1.07906 0.99420 0.96117 1.22591 0.94693 0.87392 0.99269 1.67560 1.14567 1.29542 1.08077 0.91888 0.77640 0.81993 0.83579 0.73741 0.82395 0.85321 0.85634 0.85796 0.83487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.57 13.03 55.49 0.72 -23.85 16 2 C 0.08 2.41 4.12 -17.48 -0.07 2.34 16 3 Si 0.92 22.03 29.64 -169.99 -5.04 16.99 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.34 -9.76 8.72 -14.95 -0.13 -9.89 16 8 H 0.09 2.44 7.97 -52.49 -0.42 2.02 16 9 N -0.38 -10.06 2.65 -61.86 -0.16 -10.23 16 10 C 0.57 14.98 6.76 -12.54 -0.08 14.90 16 11 O -0.51 -14.93 15.77 5.27 0.08 -14.85 16 12 C -0.23 -4.86 4.74 -104.95 -0.50 -5.36 16 13 C 0.05 1.01 8.75 30.64 0.27 1.28 16 14 O -0.14 -2.39 7.76 -18.91 -0.15 -2.54 16 15 C -0.04 -0.69 5.26 -38.90 -0.20 -0.89 16 16 C 0.05 0.53 9.92 -39.19 -0.39 0.14 16 17 C -0.22 -2.28 9.99 -39.31 -0.39 -2.67 16 18 C 0.50 6.58 7.81 31.92 0.25 6.83 16 19 O -0.49 -8.65 13.21 -27.67 -0.37 -9.02 16 20 O -0.51 -5.33 13.54 -41.28 -0.56 -5.89 16 21 C -0.10 -1.84 10.70 -38.89 -0.42 -2.25 16 22 C 0.36 8.04 4.66 -154.70 -0.72 7.32 16 23 C -0.22 -3.96 5.87 -39.22 -0.23 -4.19 16 24 C -0.06 -0.95 9.90 -39.31 -0.39 -1.34 16 25 C -0.23 -3.32 10.11 -39.40 -0.40 -3.72 16 26 C 0.12 2.06 11.18 -17.57 -0.20 1.86 16 27 N -0.48 -10.80 10.07 -12.35 -0.12 -10.93 16 28 H 0.27 7.69 8.32 -40.82 -0.34 7.35 16 29 H 0.21 4.13 5.33 -52.49 -0.28 3.85 16 30 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.41 2.80 8.98 45.56 0.41 3.21 16 33 H 0.16 2.54 8.06 -52.49 -0.42 2.12 16 34 H 0.13 2.31 6.84 -52.48 -0.36 1.95 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.15 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -37.39 331.27 -6.53 -43.92 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -2.32 Total: 7.03 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -3.60 Total: 4.36 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.43 Total: -45.00 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.99 Total: -32.30 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.04 Total: 16.99 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -37.39 -6.53 -43.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.438 kcal (2) G-P(sol) polarization free energy of solvation -37.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds