Wall clock time and date at job start Tue Mar 31 2020 15:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86803 * 120.00150 * 2 1 4 4 H 1.48503 * 109.46972 * 240.00226 * 3 2 1 5 5 H 1.48504 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47184 * 120.00102 * 3 2 1 7 7 C 1.38925 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00042 * 208.45060 * 7 2 1 9 9 N 1.37079 * 119.99714 * 28.44897 * 7 2 1 10 10 C 1.34771 * 119.99976 * 48.03948 * 9 7 2 11 11 O 1.21612 * 120.00295 * 5.55654 * 10 9 7 12 12 C 1.47376 * 120.00066 * 185.55608 * 10 9 7 13 13 C 1.37981 * 126.76138 * 20.92907 * 12 10 9 14 14 O 1.33606 * 108.38073 * 179.97438 * 13 12 10 15 15 C 1.34897 * 109.90345 * 0.02562 * 14 13 12 16 16 C 1.41673 * 125.67813 * 180.02562 * 15 14 13 17 17 C 1.35662 * 120.00096 * 38.69286 * 16 15 14 18 18 C 1.41368 * 120.00160 * 10.46119 * 17 16 15 19 19 O 1.21695 * 119.99897 * 6.56184 * 18 17 16 20 20 O 1.34987 * 120.00122 * 186.55130 * 18 17 16 21 21 C 1.36504 * 108.64666 * 359.71952 * 15 14 13 22 22 C 1.39338 * 119.99766 * 228.03414 * 9 7 2 23 23 C 1.39081 * 119.70002 * 225.94454 * 22 9 7 24 24 C 1.38377 * 119.09817 * 179.74695 * 23 22 9 25 25 C 1.38833 * 118.48940 * 0.50061 * 24 23 22 26 26 C 1.38145 * 119.31747 * 359.47784 * 25 24 23 27 27 N 1.31872 * 120.85500 * 0.27997 * 26 25 24 28 28 H 0.97006 * 119.99968 * 4.96650 * 1 2 3 29 29 H 1.07994 * 125.81047 * 359.96437 * 13 12 10 30 30 H 1.07997 * 120.00054 * 218.69958 * 16 15 14 31 31 H 1.08003 * 119.99697 * 190.46396 * 17 16 15 32 32 H 0.96701 * 113.99719 * 180.02562 * 20 18 17 33 33 H 1.08001 * 126.70247 * 180.27435 * 21 15 14 34 34 H 1.08005 * 120.45611 * 0.02562 * 23 22 9 35 35 H 1.08001 * 120.75728 * 180.27644 * 24 23 22 36 36 H 1.08003 * 120.34065 * 179.75156 * 25 24 23 37 37 H 1.08009 * 119.57115 * 180.29662 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0087 -1.2031 -0.0005 8 1 2.9908 -1.2598 0.4450 9 7 1.4474 -2.3183 -0.5666 10 6 0.8945 -2.2456 -1.7935 11 8 0.9822 -1.2194 -2.4402 12 6 0.1836 -3.4097 -2.3516 13 6 -0.3504 -4.4677 -1.6451 14 8 -0.9108 -5.3143 -2.5136 15 6 -0.7624 -4.8477 -3.7706 16 6 -1.2312 -5.4812 -4.9479 17 6 -2.4343 -6.1081 -4.9478 18 6 -3.3162 -5.9451 -3.8550 19 8 -3.0504 -5.1512 -2.9718 20 8 -4.4532 -6.6698 -3.7914 21 6 -0.0915 -3.6600 -3.7189 22 6 1.4486 -3.5270 0.1266 23 6 1.8164 -4.6971 -0.5292 24 6 1.8182 -5.8897 0.1725 25 6 1.4406 -5.8727 1.5084 26 6 1.0874 -4.6735 2.0962 27 7 1.0998 -3.5513 1.4037 28 1 -0.4850 0.8369 -0.0727 29 1 -0.3204 -4.5908 -0.5726 30 1 -0.6307 -5.4652 -5.8454 31 1 -2.7183 -6.7317 -5.7826 32 1 -4.9914 -6.4892 -3.0086 33 1 0.1791 -3.0345 -4.5567 34 1 2.1011 -4.6745 -1.5708 35 1 2.1035 -6.8134 -0.3090 36 1 1.4274 -6.7869 2.0833 37 1 0.7975 -4.6547 3.1365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:15 Heat of formation + Delta-G solvation = -37.818408 kcal Electronic energy + Delta-G solvation = -27949.916604 eV Core-core repulsion = 23853.350193 eV Total energy + Delta-G solvation = -4096.566411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.80004 -41.62309 -41.12601 -39.79538 -37.19493 -36.42074 -35.31359 -34.65924 -33.70820 -33.19180 -30.96731 -30.19164 -27.40531 -26.02751 -24.97895 -24.19052 -23.51565 -22.56857 -21.70567 -20.49731 -19.45629 -19.36167 -18.73511 -17.65524 -17.54858 -17.46067 -16.97099 -16.75180 -16.53872 -16.46996 -16.00993 -15.69699 -15.25035 -15.17130 -14.90086 -14.49013 -14.42199 -14.01289 -13.91346 -13.65424 -13.51421 -13.34578 -13.13219 -12.75469 -12.70363 -12.55120 -12.24697 -11.67183 -11.28171 -11.12973 -10.97017 -10.80339 -10.63447 -10.38897 -10.13077 -9.29450 -8.92390 -8.42904 -6.22566 -0.62413 0.05479 0.49372 0.70284 1.21616 1.32113 1.41667 1.46984 1.85932 2.13844 2.21538 2.47479 2.50515 2.67750 2.89582 3.17679 3.50796 3.70671 3.83140 3.88903 4.08486 4.19850 4.31866 4.33742 4.38775 4.45126 4.62335 4.76150 4.79050 4.88446 4.98364 5.14176 5.22719 5.32646 5.34455 5.38167 5.57694 5.81338 5.92219 6.05089 6.60542 6.82236 6.96730 7.14958 7.53372 7.86080 8.62356 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.004682 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.861618 B = 5979.530412 C = 7220.214879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.038 3.962 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.365 4.365 8 H 0.078 0.922 9 N -0.403 5.403 10 C 0.559 3.441 11 O -0.569 6.569 12 C -0.249 4.249 13 C 0.048 3.952 14 O -0.131 6.131 15 C -0.012 4.012 16 C 0.038 3.962 17 C -0.196 4.196 18 C 0.493 3.507 19 O -0.547 6.547 20 O -0.504 6.504 21 C -0.134 4.134 22 C 0.323 3.677 23 C -0.206 4.206 24 C -0.054 4.054 25 C -0.191 4.191 26 C 0.101 3.899 27 N -0.531 5.531 28 H 0.267 0.733 29 H 0.199 0.801 30 H 0.215 0.785 31 H 0.194 0.806 32 H 0.421 0.579 33 H 0.167 0.833 34 H 0.127 0.873 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -20.146 -7.386 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.170 4.170 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.491 4.491 8 H 0.096 0.904 9 N -0.118 5.118 10 C 0.350 3.650 11 O -0.450 6.450 12 C -0.253 4.253 13 C -0.025 4.025 14 O -0.024 6.024 15 C -0.061 4.061 16 C 0.021 3.979 17 C -0.214 4.214 18 C 0.341 3.659 19 O -0.440 6.440 20 O -0.315 6.315 21 C -0.153 4.153 22 C 0.096 3.904 23 C -0.229 4.229 24 C -0.079 4.079 25 C -0.212 4.212 26 C -0.057 4.057 27 N -0.245 5.245 28 H 0.076 0.924 29 H 0.215 0.785 30 H 0.232 0.768 31 H 0.211 0.789 32 H 0.280 0.720 33 H 0.185 0.815 34 H 0.145 0.855 35 H 0.191 0.809 36 H 0.194 0.806 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.439 -18.805 -7.351 20.482 hybrid contribution 0.024 1.167 0.650 1.336 sum -3.415 -17.638 -6.701 19.175 Atomic orbital electron populations 1.70127 1.08493 1.29195 1.42442 1.26198 0.95213 1.03351 0.92208 0.85351 0.78607 0.77266 0.79201 1.19972 1.20401 1.17787 1.19050 0.99927 0.87224 1.42869 0.90413 1.41040 1.51149 1.07597 1.11975 1.17814 0.79978 0.86735 0.80424 1.90538 1.61148 1.33241 1.60067 1.20720 1.10214 0.98158 0.96233 1.25020 0.94097 0.88366 0.94988 1.84066 1.58838 1.43902 1.15612 1.19797 1.04617 0.97014 0.84667 1.21423 0.94789 0.88140 0.93569 1.21831 0.93847 1.05679 1.00078 1.20360 0.81575 0.77752 0.86220 1.91097 1.75121 1.36732 1.41046 1.85026 1.33631 1.62061 1.50808 1.22009 1.00286 0.97262 0.95761 1.19317 0.94249 0.87199 0.89661 1.21951 1.05839 0.93216 1.01930 1.21779 0.94619 0.97377 0.94172 1.22402 1.02832 1.00052 0.95885 1.23201 0.94867 0.87188 1.00441 1.67391 1.15804 1.32787 1.08562 0.92395 0.78461 0.76825 0.78932 0.72026 0.81500 0.85504 0.80904 0.80553 0.80770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -55.85 13.03 21.66 0.28 -55.57 16 2 C 0.04 2.32 4.12 84.92 0.35 2.67 16 3 Si 0.97 47.97 29.64 68.60 2.03 50.00 16 4 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.25 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.36 -22.19 8.72 84.04 0.73 -21.46 16 8 H 0.08 4.66 7.97 -2.91 -0.02 4.63 16 9 N -0.40 -22.76 2.65 -467.87 -1.24 -24.00 16 10 C 0.56 31.60 6.76 86.65 0.59 32.19 16 11 O -0.57 -36.07 15.77 -4.07 -0.06 -36.14 16 12 C -0.25 -11.33 4.74 -20.08 -0.10 -11.42 16 13 C 0.05 1.94 8.75 67.76 0.59 2.54 16 14 O -0.13 -4.52 7.76 21.82 0.17 -4.35 16 15 C -0.01 -0.36 5.26 22.71 0.12 -0.24 16 16 C 0.04 0.67 9.92 22.52 0.22 0.90 16 17 C -0.20 -3.15 9.99 22.44 0.22 -2.93 16 18 C 0.49 11.58 7.81 68.59 0.54 12.11 16 19 O -0.55 -18.62 13.21 27.09 0.36 -18.26 16 20 O -0.50 -8.74 13.54 -59.05 -0.80 -9.54 16 21 C -0.13 -4.91 10.70 22.72 0.24 -4.67 16 22 C 0.32 15.19 4.66 132.93 0.62 15.81 16 23 C -0.21 -7.51 5.87 22.51 0.13 -7.37 16 24 C -0.05 -1.40 9.90 22.45 0.22 -1.18 16 25 C -0.19 -4.64 10.11 22.39 0.23 -4.41 16 26 C 0.10 3.29 11.18 84.66 0.95 4.24 16 27 N -0.53 -24.39 10.07 -193.00 -1.94 -26.34 16 28 H 0.27 16.31 8.32 -92.70 -0.77 15.54 16 29 H 0.20 8.16 5.33 -2.91 -0.02 8.15 16 30 H 0.22 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.42 4.76 8.98 -74.06 -0.67 4.10 16 33 H 0.17 5.59 8.06 -2.91 -0.02 5.57 16 34 H 0.13 4.62 6.84 -2.91 -0.02 4.60 16 35 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 37 H 0.18 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -93.27 331.27 4.94 -88.33 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.49 Total: 19.10 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 5.66 Total: 16.77 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -2.90 Total: -105.90 kcal Atomic # 8 Polarization: -67.96 SS G_CDS: -0.34 Total: -68.30 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -93.27 4.94 -88.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.513 kcal (2) G-P(sol) polarization free energy of solvation -93.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds