Wall clock time and date at job start Tue Mar 31 2020 15:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 119.99762 * 2 1 4 4 H 1.48498 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47467 * 299.99908 * 3 2 1 6 6 H 1.48507 * 109.47407 * 60.00058 * 3 2 1 7 7 C 1.38918 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00137 * 219.76035 * 7 2 1 9 9 N 1.37081 * 119.99766 * 39.76911 * 7 2 1 10 10 C 1.34776 * 120.00312 * 53.95629 * 9 7 2 11 11 O 1.21610 * 119.99578 * 6.02637 * 10 9 7 12 12 C 1.47366 * 120.00314 * 186.03889 * 10 9 7 13 13 C 1.37971 * 126.76804 * 22.14942 * 12 10 9 14 14 O 1.33605 * 108.39220 * 180.02562 * 13 12 10 15 15 C 1.34896 * 109.89154 * 0.02562 * 14 13 12 16 16 C 1.41682 * 125.67234 * 179.97438 * 15 14 13 17 17 C 1.35663 * 119.99854 * 359.96880 * 16 15 14 18 18 C 1.41376 * 119.99781 * 180.02562 * 17 16 15 19 19 O 1.21698 * 120.00161 * 359.97438 * 18 17 16 20 20 O 1.34994 * 119.99910 * 180.02562 * 18 17 16 21 21 C 1.36499 * 108.65349 * 359.71774 * 15 14 13 22 22 C 1.39338 * 119.99539 * 233.95048 * 9 7 2 23 23 C 1.39097 * 119.69660 * 224.97979 * 22 9 7 24 24 C 1.38372 * 119.09387 * 179.73068 * 23 22 9 25 25 C 1.38835 * 118.49345 * 0.48956 * 24 23 22 26 26 C 1.38141 * 119.31496 * 359.50907 * 25 24 23 27 27 N 1.31875 * 120.85701 * 0.25261 * 26 25 24 28 28 H 0.97008 * 120.00666 * 4.88325 * 1 2 3 29 29 H 1.08004 * 125.80733 * 359.97438 * 13 12 10 30 30 H 1.07999 * 120.00259 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.00594 * 0.02562 * 17 16 15 32 32 H 0.96696 * 113.99514 * 179.97438 * 20 18 17 33 33 H 1.08004 * 126.69959 * 180.29221 * 21 15 14 34 34 H 1.07999 * 120.45275 * 359.97438 * 23 22 9 35 35 H 1.07999 * 120.75126 * 180.27673 * 24 23 22 36 36 H 1.08001 * 120.33873 * 179.78143 * 25 24 23 37 37 H 1.07999 * 119.57082 * 180.26778 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0087 -1.2031 0.0005 8 1 2.9013 -1.3110 0.5987 9 7 1.5611 -2.2532 -0.7584 10 6 1.3379 -2.0849 -2.0769 11 8 1.6365 -1.0361 -2.6151 12 6 0.7318 -3.1718 -2.8663 13 6 -0.0345 -4.2135 -2.3855 14 8 -0.3929 -4.9840 -3.4164 15 6 0.1138 -4.4830 -4.5618 16 6 -0.0601 -5.0371 -5.8542 17 6 -0.7897 -6.1696 -6.0140 18 6 -0.9629 -6.7227 -7.3035 19 8 -0.4578 -6.1827 -8.2701 20 8 -1.6893 -7.8493 -7.4627 21 6 0.8173 -3.3504 -4.2694 22 6 1.3370 -3.4946 -0.1667 23 6 1.7905 -4.6496 -0.7954 24 6 1.5662 -5.8754 -0.1939 25 6 0.8842 -5.9050 1.0150 26 6 0.4621 -4.7185 1.5827 27 7 0.6945 -3.5642 0.9889 28 1 -0.4851 0.8370 -0.0715 29 1 -0.2990 -4.3785 -1.3514 30 1 0.3881 -4.5579 -6.7120 31 1 -1.2383 -6.6486 -5.1564 32 1 -1.7517 -8.1507 -8.3794 33 1 1.3389 -2.7155 -4.9703 34 1 2.3142 -4.5901 -1.7380 35 1 1.9106 -6.7886 -0.6563 36 1 0.6897 -6.8457 1.5087 37 1 -0.0649 -4.7364 2.5253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:21 Heat of formation + Delta-G solvation = -21.864454 kcal Electronic energy + Delta-G solvation = -27061.342334 eV Core-core repulsion = 22965.467739 eV Total energy + Delta-G solvation = -4095.874596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.73195 -40.40195 -40.08366 -38.21077 -36.38771 -34.76399 -34.46432 -33.26189 -32.15936 -31.90313 -29.64144 -29.14146 -25.75798 -24.98484 -23.52293 -22.86481 -22.15321 -21.31429 -20.57376 -19.10336 -18.50667 -17.79911 -17.28745 -16.80419 -16.33458 -16.21232 -15.91480 -15.74129 -15.50176 -14.82342 -14.70233 -14.27230 -14.06820 -13.95395 -13.54914 -13.21310 -12.89139 -12.75984 -12.62022 -12.51057 -12.14202 -11.82430 -11.79302 -11.61693 -11.18887 -10.91587 -10.85130 -10.83497 -10.34735 -9.71139 -9.49643 -9.21899 -9.06558 -8.74489 -8.55110 -8.03456 -7.41652 -6.52112 -4.20816 0.14956 1.36586 1.76240 1.92336 2.31973 2.82195 3.06262 3.14504 3.22716 3.35719 3.38971 3.87430 3.99713 4.34388 4.44062 4.68053 4.79582 4.86960 4.91928 5.05247 5.19024 5.19481 5.21282 5.42025 5.51994 5.56920 5.66195 5.80731 5.96384 5.99809 6.08680 6.14222 6.21116 6.33802 6.46083 6.59514 6.94635 7.06849 7.41372 7.68160 7.95488 8.29000 8.63474 8.86805 9.18130 9.63372 10.48015 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.003733 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.041933 B = 7499.788258 C = 9071.609101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.095 3.905 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.285 1.285 7 C -0.358 4.358 8 H 0.090 0.910 9 N -0.377 5.377 10 C 0.567 3.433 11 O -0.517 6.517 12 C -0.224 4.224 13 C 0.056 3.944 14 O -0.156 6.156 15 C -0.055 4.055 16 C 0.061 3.939 17 C -0.232 4.232 18 C 0.519 3.481 19 O -0.530 6.530 20 O -0.508 6.508 21 C -0.084 4.084 22 C 0.351 3.649 23 C -0.221 4.221 24 C -0.063 4.063 25 C -0.228 4.228 26 C 0.121 3.879 27 N -0.475 5.475 28 H 0.270 0.730 29 H 0.215 0.785 30 H 0.162 0.838 31 H 0.141 0.859 32 H 0.407 0.593 33 H 0.167 0.833 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -14.520 -6.143 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.120 4.120 3 Si 0.729 3.271 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.211 1.211 7 C -0.482 4.482 8 H 0.107 0.893 9 N -0.091 5.091 10 C 0.356 3.644 11 O -0.393 6.393 12 C -0.229 4.229 13 C -0.016 4.016 14 O -0.050 6.050 15 C -0.102 4.102 16 C 0.043 3.957 17 C -0.251 4.251 18 C 0.367 3.633 19 O -0.422 6.422 20 O -0.318 6.318 21 C -0.103 4.103 22 C 0.123 3.877 23 C -0.244 4.244 24 C -0.089 4.089 25 C -0.250 4.250 26 C -0.039 4.039 27 N -0.189 5.189 28 H 0.080 0.920 29 H 0.231 0.769 30 H 0.179 0.821 31 H 0.159 0.841 32 H 0.263 0.737 33 H 0.184 0.816 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.362 -12.967 -5.876 14.431 hybrid contribution 0.474 -0.159 -0.635 0.808 sum -1.888 -13.126 -6.511 14.773 Atomic orbital electron populations 1.70288 1.07426 1.29103 1.36321 1.25369 0.94134 1.00581 0.91964 0.86333 0.81301 0.81970 0.77544 1.18784 1.20006 1.21137 1.18872 1.08864 0.88845 1.31618 0.89275 1.41010 1.55550 1.07350 1.05157 1.17303 0.79915 0.85976 0.81164 1.90649 1.51384 1.27778 1.69497 1.21086 1.06999 1.00005 0.94808 1.25643 0.95171 0.89168 0.91656 1.83971 1.59290 1.47056 1.14728 1.19152 1.06732 0.98333 0.86010 1.20760 0.90557 0.91927 0.92467 1.21122 1.07910 1.00161 0.95928 1.19501 0.75227 0.78332 0.90233 1.90958 1.47616 1.61045 1.42625 1.85103 1.68005 1.41737 1.36950 1.22132 0.97939 0.95340 0.94939 1.19487 0.90232 0.87440 0.90528 1.21953 1.06327 0.92933 1.03226 1.21245 0.96034 0.97061 0.94513 1.21868 1.05380 0.99562 0.98194 1.22636 0.95741 0.87155 0.98386 1.67583 1.12618 1.28238 1.10457 0.91982 0.76867 0.82111 0.84085 0.73687 0.81581 0.85399 0.85576 0.85712 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.49 13.86 55.49 0.77 -21.72 16 2 C 0.10 2.59 4.17 -17.48 -0.07 2.52 16 3 Si 0.90 21.36 29.69 -169.99 -5.05 16.31 16 4 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.36 -9.70 8.46 -14.95 -0.13 -9.82 16 8 H 0.09 2.41 8.05 -52.49 -0.42 1.99 16 9 N -0.38 -9.31 2.68 -61.86 -0.17 -9.48 16 10 C 0.57 13.68 7.15 -12.55 -0.09 13.59 16 11 O -0.52 -13.98 16.23 5.27 0.09 -13.90 16 12 C -0.22 -4.29 4.65 -104.96 -0.49 -4.78 16 13 C 0.06 0.93 8.76 30.63 0.27 1.20 16 14 O -0.16 -2.28 10.10 5.88 0.06 -2.22 16 15 C -0.05 -0.75 6.77 -38.90 -0.26 -1.02 16 16 C 0.06 0.70 9.37 -39.19 -0.37 0.34 16 17 C -0.23 -2.57 9.54 -39.31 -0.38 -2.94 16 18 C 0.52 5.79 8.04 31.93 0.26 6.04 16 19 O -0.53 -7.21 16.84 -19.42 -0.33 -7.54 16 20 O -0.51 -4.40 13.54 -41.30 -0.56 -4.96 16 21 C -0.08 -1.32 10.71 -38.89 -0.42 -1.74 16 22 C 0.35 7.42 4.70 -154.70 -0.73 6.69 16 23 C -0.22 -3.75 5.89 -39.21 -0.23 -3.98 16 24 C -0.06 -0.86 9.97 -39.31 -0.39 -1.25 16 25 C -0.23 -3.02 10.11 -39.40 -0.40 -3.42 16 26 C 0.12 1.93 11.18 -17.57 -0.20 1.73 16 27 N -0.48 -10.02 10.05 -12.35 -0.12 -10.15 16 28 H 0.27 7.11 8.32 -40.82 -0.34 6.77 16 29 H 0.22 3.63 5.54 -52.48 -0.29 3.34 16 30 H 0.16 1.64 7.45 -52.49 -0.39 1.25 16 31 H 0.14 1.48 7.70 -52.49 -0.40 1.08 16 32 H 0.41 1.72 8.98 45.56 0.41 2.12 16 33 H 0.17 2.35 8.06 -52.48 -0.42 1.92 16 34 H 0.13 2.13 6.78 -52.49 -0.36 1.77 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -33.80 338.83 -6.10 -39.90 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -2.28 Total: 5.48 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -3.62 Total: 3.16 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.48 Total: -41.34 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.74 Total: -28.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.05 Total: 16.31 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.80 -6.10 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.039 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds