Wall clock time and date at job start Tue Mar 31 2020 15:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 119.99762 * 2 1 4 4 H 1.48498 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47467 * 299.99908 * 3 2 1 6 6 H 1.48507 * 109.47407 * 60.00058 * 3 2 1 7 7 C 1.38918 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00137 * 219.76035 * 7 2 1 9 9 N 1.37081 * 119.99766 * 39.76911 * 7 2 1 10 10 C 1.34776 * 120.00312 * 53.95629 * 9 7 2 11 11 O 1.21610 * 119.99578 * 6.02637 * 10 9 7 12 12 C 1.47366 * 120.00314 * 186.03889 * 10 9 7 13 13 C 1.37971 * 126.76804 * 22.14942 * 12 10 9 14 14 O 1.33605 * 108.39220 * 180.02562 * 13 12 10 15 15 C 1.34896 * 109.89154 * 0.02562 * 14 13 12 16 16 C 1.41682 * 125.67234 * 179.97438 * 15 14 13 17 17 C 1.35663 * 119.99854 * 359.96880 * 16 15 14 18 18 C 1.41376 * 119.99781 * 180.02562 * 17 16 15 19 19 O 1.21698 * 120.00161 * 359.97438 * 18 17 16 20 20 O 1.34994 * 119.99910 * 180.02562 * 18 17 16 21 21 C 1.36499 * 108.65349 * 359.71774 * 15 14 13 22 22 C 1.39338 * 119.99539 * 233.95048 * 9 7 2 23 23 C 1.39097 * 119.69660 * 224.97979 * 22 9 7 24 24 C 1.38372 * 119.09387 * 179.73068 * 23 22 9 25 25 C 1.38835 * 118.49345 * 0.48956 * 24 23 22 26 26 C 1.38141 * 119.31496 * 359.50907 * 25 24 23 27 27 N 1.31875 * 120.85701 * 0.25261 * 26 25 24 28 28 H 0.97008 * 120.00666 * 4.88325 * 1 2 3 29 29 H 1.08004 * 125.80733 * 359.97438 * 13 12 10 30 30 H 1.07999 * 120.00259 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.00594 * 0.02562 * 17 16 15 32 32 H 0.96696 * 113.99514 * 179.97438 * 20 18 17 33 33 H 1.08004 * 126.69959 * 180.29221 * 21 15 14 34 34 H 1.07999 * 120.45275 * 359.97438 * 23 22 9 35 35 H 1.07999 * 120.75126 * 180.27673 * 24 23 22 36 36 H 1.08001 * 120.33873 * 179.78143 * 25 24 23 37 37 H 1.07999 * 119.57082 * 180.26778 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0087 -1.2031 0.0005 8 1 2.9013 -1.3110 0.5987 9 7 1.5611 -2.2532 -0.7584 10 6 1.3379 -2.0849 -2.0769 11 8 1.6365 -1.0361 -2.6151 12 6 0.7318 -3.1718 -2.8663 13 6 -0.0345 -4.2135 -2.3855 14 8 -0.3929 -4.9840 -3.4164 15 6 0.1138 -4.4830 -4.5618 16 6 -0.0601 -5.0371 -5.8542 17 6 -0.7897 -6.1696 -6.0140 18 6 -0.9629 -6.7227 -7.3035 19 8 -0.4578 -6.1827 -8.2701 20 8 -1.6893 -7.8493 -7.4627 21 6 0.8173 -3.3504 -4.2694 22 6 1.3370 -3.4946 -0.1667 23 6 1.7905 -4.6496 -0.7954 24 6 1.5662 -5.8754 -0.1939 25 6 0.8842 -5.9050 1.0150 26 6 0.4621 -4.7185 1.5827 27 7 0.6945 -3.5642 0.9889 28 1 -0.4851 0.8370 -0.0715 29 1 -0.2990 -4.3785 -1.3514 30 1 0.3881 -4.5579 -6.7120 31 1 -1.2383 -6.6486 -5.1564 32 1 -1.7517 -8.1507 -8.3794 33 1 1.3389 -2.7155 -4.9703 34 1 2.3142 -4.5901 -1.7380 35 1 1.9106 -6.7886 -0.6563 36 1 0.6897 -6.8457 1.5087 37 1 -0.0649 -4.7364 2.5253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:20 Heat of formation + Delta-G solvation = -45.332814 kcal Electronic energy + Delta-G solvation = -27062.359999 eV Core-core repulsion = 22965.467739 eV Total energy + Delta-G solvation = -4096.892260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.98719 -41.57894 -41.24166 -39.82977 -37.19498 -36.48423 -35.49360 -34.77354 -33.85760 -33.20866 -31.02385 -30.39300 -27.47149 -26.11134 -25.04047 -24.14714 -23.58563 -22.41431 -21.85235 -20.48057 -19.48052 -19.40102 -18.41430 -17.86529 -17.60279 -17.53520 -17.44487 -16.78004 -16.58751 -16.54274 -16.07552 -15.97907 -15.38541 -15.26113 -14.86452 -14.56659 -14.47083 -13.96009 -13.89645 -13.76743 -13.54831 -13.28679 -13.18198 -12.75408 -12.68035 -12.61674 -12.21958 -11.93906 -11.77845 -11.08744 -11.04443 -10.86353 -10.65326 -10.40182 -10.07123 -9.34380 -8.98672 -8.47280 -6.23107 -0.85326 0.01675 0.52965 0.61566 1.18298 1.31789 1.41225 1.49965 1.59080 2.09878 2.15560 2.34530 2.39354 2.65028 2.84124 3.11941 3.41337 3.60509 3.72039 3.91153 4.03815 4.10462 4.19591 4.28753 4.34771 4.36708 4.50617 4.61640 4.76617 4.89711 4.91940 5.05864 5.17974 5.25771 5.36011 5.37993 5.54060 5.72101 5.83677 6.07014 6.59328 6.76968 6.93756 7.14631 7.55089 7.81499 8.49990 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.003733 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.041933 B = 7499.788258 C = 9071.609101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.058 3.942 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.378 4.378 8 H 0.072 0.928 9 N -0.397 5.397 10 C 0.556 3.444 11 O -0.571 6.571 12 C -0.249 4.249 13 C 0.066 3.934 14 O -0.143 6.143 15 C -0.023 4.023 16 C 0.051 3.949 17 C -0.209 4.209 18 C 0.524 3.476 19 O -0.555 6.555 20 O -0.501 6.501 21 C -0.103 4.103 22 C 0.321 3.679 23 C -0.211 4.211 24 C -0.052 4.052 25 C -0.189 4.189 26 C 0.103 3.897 27 N -0.523 5.523 28 H 0.269 0.731 29 H 0.213 0.787 30 H 0.175 0.825 31 H 0.153 0.847 32 H 0.427 0.573 33 H 0.174 0.826 34 H 0.127 0.873 35 H 0.172 0.828 36 H 0.175 0.825 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -18.955 -6.651 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.154 4.154 3 Si 0.776 3.224 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.503 4.503 8 H 0.090 0.910 9 N -0.111 5.111 10 C 0.347 3.653 11 O -0.452 6.452 12 C -0.254 4.254 13 C -0.007 4.007 14 O -0.037 6.037 15 C -0.071 4.071 16 C 0.033 3.967 17 C -0.228 4.228 18 C 0.373 3.627 19 O -0.450 6.450 20 O -0.313 6.313 21 C -0.122 4.122 22 C 0.094 3.906 23 C -0.234 4.234 24 C -0.078 4.078 25 C -0.210 4.210 26 C -0.056 4.056 27 N -0.237 5.237 28 H 0.079 0.921 29 H 0.229 0.771 30 H 0.192 0.808 31 H 0.171 0.829 32 H 0.287 0.713 33 H 0.192 0.808 34 H 0.145 0.855 35 H 0.190 0.810 36 H 0.193 0.807 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.026 -17.485 -6.339 18.843 hybrid contribution 0.580 0.742 -0.523 1.078 sum -2.446 -16.743 -6.862 18.259 Atomic orbital electron populations 1.70332 1.08440 1.29428 1.39062 1.26011 0.94658 1.02906 0.91818 0.85594 0.80296 0.79062 0.77486 1.18559 1.21029 1.19463 1.18776 1.08863 0.90944 1.31687 0.90984 1.41026 1.56524 1.08241 1.05351 1.17902 0.79457 0.86611 0.81321 1.90576 1.54089 1.30008 1.70560 1.20770 1.08808 0.99875 0.95934 1.25314 0.94754 0.88753 0.91856 1.83983 1.58841 1.46325 1.14544 1.19335 1.04447 0.96960 0.86349 1.20805 0.91828 0.92646 0.91460 1.21306 1.05921 0.99173 0.96433 1.19452 0.74891 0.78603 0.89735 1.90968 1.48642 1.61898 1.43445 1.85060 1.66875 1.40414 1.38960 1.22202 0.99576 0.96737 0.93719 1.19430 0.92744 0.87120 0.91294 1.21985 1.05395 0.92958 1.03103 1.21770 0.94651 0.97047 0.94304 1.22401 1.01307 1.00322 0.96963 1.23193 0.96113 0.86865 0.99380 1.67413 1.13860 1.31468 1.11006 0.92104 0.77076 0.80827 0.82914 0.71259 0.80848 0.85479 0.81040 0.80722 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -50.05 13.86 21.66 0.30 -49.75 16 2 C 0.06 3.32 4.17 84.92 0.35 3.67 16 3 Si 0.95 46.31 29.69 68.60 2.04 48.35 16 4 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.38 -21.85 8.46 84.04 0.71 -21.14 16 8 H 0.07 4.22 8.05 -2.91 -0.02 4.19 16 9 N -0.40 -20.75 2.68 -467.88 -1.25 -22.00 16 10 C 0.56 28.53 7.15 86.65 0.62 29.15 16 11 O -0.57 -33.30 16.23 -4.06 -0.07 -33.36 16 12 C -0.25 -9.83 4.65 -20.08 -0.09 -9.92 16 13 C 0.07 2.16 8.76 67.76 0.59 2.76 16 14 O -0.14 -3.85 10.10 -1.86 -0.02 -3.87 16 15 C -0.02 -0.59 6.77 22.71 0.15 -0.44 16 16 C 0.05 1.03 9.37 22.52 0.21 1.24 16 17 C -0.21 -3.86 9.54 22.45 0.21 -3.65 16 18 C 0.52 9.89 8.04 68.59 0.55 10.44 16 19 O -0.55 -13.61 16.84 19.19 0.32 -13.29 16 20 O -0.50 -6.71 13.54 -59.12 -0.80 -7.51 16 21 C -0.10 -3.27 10.71 22.72 0.24 -3.02 16 22 C 0.32 13.84 4.70 132.94 0.63 14.47 16 23 C -0.21 -6.90 5.89 22.51 0.13 -6.77 16 24 C -0.05 -1.19 9.97 22.44 0.22 -0.96 16 25 C -0.19 -4.05 10.11 22.39 0.23 -3.83 16 26 C 0.10 3.05 11.18 84.66 0.95 3.99 16 27 N -0.52 -22.31 10.05 -193.00 -1.94 -24.25 16 28 H 0.27 15.08 8.32 -92.70 -0.77 14.31 16 29 H 0.21 7.07 5.54 -2.91 -0.02 7.06 16 30 H 0.17 3.14 7.45 -2.91 -0.02 3.12 16 31 H 0.15 2.51 7.70 -2.91 -0.02 2.49 16 32 H 0.43 2.00 8.98 -74.06 -0.67 1.33 16 33 H 0.17 5.07 8.06 -2.91 -0.02 5.05 16 34 H 0.13 4.15 6.78 -2.91 -0.02 4.13 16 35 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.17 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -80.76 338.83 4.78 -75.98 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.49 Total: 13.71 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 5.71 Total: 15.99 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -2.89 Total: -96.00 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: -0.56 Total: -58.04 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.04 Total: 48.35 kcal Total: -80.76 4.78 -75.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.647 kcal (2) G-P(sol) polarization free energy of solvation -80.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds