Wall clock time and date at job start Tue Mar 31 2020 15:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31252 * 1 3 3 Si 1.86799 * 119.99938 * 2 1 4 4 H 1.48503 * 109.46991 * 240.00187 * 3 2 1 5 5 H 1.48500 * 109.47434 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46974 * 120.00744 * 3 2 1 7 7 C 1.39178 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99756 * 191.67127 * 7 2 1 9 9 N 1.36664 * 120.00243 * 11.67815 * 7 2 1 10 10 C 1.34779 * 120.00242 * 190.36688 * 9 7 2 11 11 O 1.21770 * 119.99790 * 5.02646 * 10 9 7 12 12 C 1.41770 * 119.99966 * 185.02893 * 10 9 7 13 13 C 1.35515 * 119.99827 * 185.97051 * 12 10 9 14 14 C 1.46169 * 120.00068 * 9.44245 * 13 12 10 15 15 C 1.38245 * 125.82383 * 218.14725 * 14 13 12 16 16 C 1.39673 * 106.85956 * 179.84611 * 15 14 13 17 17 C 1.37892 * 106.90725 * 0.41224 * 16 15 14 18 18 C 1.46745 * 125.77740 * 179.76510 * 17 16 15 19 19 O 1.21586 * 119.99706 * 359.97438 * 18 17 16 20 20 O 1.34881 * 119.99759 * 180.02562 * 18 17 16 21 21 O 1.34589 * 125.82082 * 38.45466 * 14 13 12 22 22 C 1.39319 * 119.99681 * 10.35833 * 9 7 2 23 23 C 1.39091 * 119.70390 * 264.02821 * 22 9 7 24 24 C 1.38381 * 119.10069 * 179.77436 * 23 22 9 25 25 C 1.38831 * 118.48964 * 0.49002 * 24 23 22 26 26 C 1.38161 * 119.31234 * 359.51137 * 25 24 23 27 27 N 1.31862 * 120.85840 * 0.24979 * 26 25 24 28 28 H 0.97003 * 119.99916 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00170 * 5.96465 * 12 10 9 30 30 H 1.07997 * 120.00239 * 189.43997 * 13 12 10 31 31 H 1.08001 * 126.57042 * 359.97438 * 15 14 13 32 32 H 1.07996 * 126.54871 * 180.15464 * 16 15 14 33 33 H 0.96702 * 116.99820 * 180.02562 * 20 18 17 34 34 H 1.08003 * 120.44784 * 0.02562 * 23 22 9 35 35 H 1.08003 * 120.75416 * 180.25693 * 24 23 22 36 36 H 1.07993 * 120.33988 * 179.78201 * 25 24 23 37 37 H 1.08002 * 119.56835 * 180.22805 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 3.1002 1.6964 -1.2126 5 1 1.2816 2.7465 0.0006 6 1 3.1004 1.6963 1.2125 7 6 2.0084 -1.2053 -0.0005 8 1 3.0716 -1.2151 0.1887 9 7 1.3463 -2.3765 -0.2406 10 6 1.9670 -3.5555 -0.0374 11 8 3.0842 -3.5799 0.4463 12 6 1.3191 -4.7671 -0.3868 13 6 1.8896 -5.9555 -0.0726 14 6 3.0603 -5.9958 0.8017 15 6 4.1435 -6.8439 0.6649 16 6 5.0269 -6.5435 1.7043 17 6 4.4489 -5.5320 2.4421 18 6 5.0258 -4.9038 3.6363 19 8 6.1068 -5.2712 4.0543 20 8 4.3563 -3.9197 4.2707 21 8 3.2649 -5.2176 1.8805 22 6 0.0296 -2.3517 -0.6953 23 6 -1.0159 -2.4761 0.2136 24 6 -2.3190 -2.4451 -0.2511 25 6 -2.5323 -2.3006 -1.6153 26 6 -1.4461 -2.1826 -2.4610 27 7 -0.2152 -2.2106 -1.9889 28 1 -0.4850 0.8401 0.0004 29 1 0.3710 -4.7431 -0.9033 30 1 1.4793 -6.8729 -0.4682 31 1 4.2813 -7.5935 -0.1003 32 1 5.9787 -7.0162 1.8962 33 1 4.7765 -3.5362 5.0526 34 1 -0.8135 -2.5912 1.2683 35 1 -3.1511 -2.5352 0.4315 36 1 -3.5369 -2.2762 -2.0108 37 1 -1.6074 -2.0662 -3.5225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:25 Heat of formation + Delta-G solvation = -18.161634 kcal Electronic energy + Delta-G solvation = -27606.927483 eV Core-core repulsion = 23511.213454 eV Total energy + Delta-G solvation = -4095.714030 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.02915 -39.99595 -39.60847 -38.19445 -35.93174 -35.14548 -33.21449 -32.48482 -32.12793 -31.56904 -29.31814 -29.11890 -26.01941 -24.35958 -22.89585 -22.70527 -21.95812 -21.25067 -20.28617 -18.70178 -18.27442 -18.01436 -17.39922 -16.76257 -16.03640 -15.84828 -15.45061 -15.18472 -14.81798 -14.60815 -14.25414 -13.69949 -13.63607 -13.34850 -13.27172 -12.83142 -12.79415 -12.70309 -12.45246 -12.40377 -11.76799 -11.74589 -11.41509 -11.31480 -11.21757 -10.74491 -10.63552 -10.50191 -9.91130 -9.58812 -9.46503 -9.11629 -8.89039 -8.70709 -8.25239 -8.03970 -7.71901 -6.48643 -4.05175 0.79397 1.66182 1.93216 2.13309 2.83284 2.89362 3.11976 3.13006 3.16877 3.24623 3.64612 3.89740 4.14317 4.36936 4.61700 4.92846 4.99052 5.17495 5.29390 5.43700 5.46399 5.51578 5.71802 5.76042 5.88417 5.93328 6.02081 6.14262 6.22032 6.39362 6.46246 6.52272 6.55120 6.74378 6.85041 6.89648 7.24543 7.38979 7.40776 7.78753 8.07547 8.21870 8.80445 8.89945 9.12885 9.66663 10.38024 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.004646 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.797339 B = 6025.870796 C = 7481.703160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.032 3.968 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.288 4.288 8 H 0.116 0.884 9 N -0.381 5.381 10 C 0.458 3.542 11 O -0.562 6.562 12 C -0.132 4.132 13 C -0.082 4.082 14 C 0.109 3.891 15 C -0.232 4.232 16 C -0.109 4.109 17 C -0.078 4.078 18 C 0.577 3.423 19 O -0.514 6.514 20 O -0.497 6.497 21 O -0.096 6.096 22 C 0.423 3.577 23 C -0.114 4.114 24 C -0.078 4.078 25 C -0.198 4.198 26 C 0.103 3.897 27 N -0.495 5.495 28 H 0.276 0.724 29 H 0.123 0.877 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.412 0.588 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -8.576 0.675 9.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.173 4.173 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.415 4.415 8 H 0.134 0.866 9 N -0.097 5.097 10 C 0.252 3.748 11 O -0.447 6.447 12 C -0.153 4.153 13 C -0.104 4.104 14 C 0.054 3.946 15 C -0.251 4.251 16 C -0.129 4.129 17 C -0.130 4.130 18 C 0.423 3.577 19 O -0.406 6.406 20 O -0.308 6.308 21 O 0.012 5.988 22 C 0.196 3.804 23 C -0.136 4.136 24 C -0.105 4.105 25 C -0.218 4.218 26 C -0.054 4.054 27 N -0.207 5.207 28 H 0.088 0.912 29 H 0.141 0.859 30 H 0.171 0.829 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.270 0.730 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.484 -8.279 0.249 8.647 hybrid contribution -0.292 1.355 0.787 1.594 sum -2.776 -6.923 1.036 7.531 Atomic orbital electron populations 1.69647 1.06026 1.28343 1.45289 1.25440 0.95704 1.00385 0.95812 0.85791 0.78952 0.79464 0.79469 1.19493 1.20683 1.19390 1.19889 0.94807 0.81609 1.45201 0.86630 1.41190 1.08877 1.06604 1.52986 1.16597 0.88109 0.83228 0.86857 1.90732 1.19794 1.85615 1.48566 1.22553 0.99165 0.93782 0.99823 1.21230 0.93406 0.98147 0.97629 1.21104 0.96288 0.88795 0.88408 1.21928 0.95069 1.05274 1.02802 1.21833 1.00418 0.96260 0.94361 1.20763 0.89918 1.03478 0.98885 1.19012 0.81542 0.76485 0.80700 1.90924 1.21014 1.63273 1.65387 1.84777 1.52137 1.49411 1.44425 1.84458 1.32366 1.48079 1.33882 1.17827 0.85483 0.89534 0.87542 1.21684 0.92444 0.99542 0.99913 1.21157 0.96187 0.97875 0.95256 1.21784 0.99559 1.05914 0.94557 1.22209 0.87291 0.96732 0.99208 1.67300 1.23912 1.13222 1.16306 0.91212 0.85885 0.82911 0.82712 0.82629 0.73021 0.86175 0.86142 0.86287 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.59 9.91 55.51 0.55 -21.03 16 2 C 0.03 0.83 5.33 -17.45 -0.09 0.73 16 3 Si 0.94 20.39 29.57 -169.99 -5.03 15.36 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.29 -7.80 9.46 -15.05 -0.14 -7.94 16 8 H 0.12 3.26 7.26 -52.49 -0.38 2.88 16 9 N -0.38 -9.64 2.72 -63.68 -0.17 -9.81 16 10 C 0.46 11.05 7.19 -14.91 -0.11 10.94 16 11 O -0.56 -14.90 11.98 -19.72 -0.24 -15.14 16 12 C -0.13 -2.51 9.22 -39.21 -0.36 -2.87 16 13 C -0.08 -1.32 10.15 -37.37 -0.38 -1.70 16 14 C 0.11 1.99 5.54 -36.40 -0.20 1.79 16 15 C -0.23 -3.60 10.88 -39.04 -0.42 -4.02 16 16 C -0.11 -1.77 10.63 -39.17 -0.42 -2.19 16 17 C -0.08 -1.49 7.21 -36.27 -0.26 -1.75 16 18 C 0.58 10.29 8.31 34.17 0.28 10.57 16 19 O -0.51 -9.42 17.65 -19.33 -0.34 -9.76 16 20 O -0.50 -7.96 13.44 -42.51 -0.57 -8.53 16 21 O -0.10 -2.03 7.82 -22.69 -0.18 -2.21 16 22 C 0.42 9.61 2.07 -154.72 -0.32 9.29 16 23 C -0.11 -2.31 8.55 -39.21 -0.34 -2.65 16 24 C -0.08 -1.32 10.17 -39.31 -0.40 -1.71 16 25 C -0.20 -3.11 10.11 -39.39 -0.40 -3.51 16 26 C 0.10 1.83 11.18 -17.57 -0.20 1.64 16 27 N -0.49 -10.89 10.39 -12.36 -0.13 -11.02 16 28 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.12 2.15 7.00 -52.49 -0.37 1.78 16 30 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.16 1.85 8.06 -52.49 -0.42 1.42 16 32 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.41 4.07 9.11 45.56 0.42 4.48 16 34 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 35 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -33.88 338.90 -7.18 -41.06 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -2.43 Total: 9.37 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -3.75 Total: 6.60 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.25 Total: -41.86 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -1.33 Total: -35.64 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.88 -7.18 -41.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.896 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds