Wall clock time and date at job start Tue Mar 31 2020 15:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31252 * 1 3 3 Si 1.86799 * 119.99938 * 2 1 4 4 H 1.48503 * 109.46991 * 240.00187 * 3 2 1 5 5 H 1.48500 * 109.47434 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46974 * 120.00744 * 3 2 1 7 7 C 1.39178 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99756 * 191.67127 * 7 2 1 9 9 N 1.36664 * 120.00243 * 11.67815 * 7 2 1 10 10 C 1.34779 * 120.00242 * 190.36688 * 9 7 2 11 11 O 1.21770 * 119.99790 * 5.02646 * 10 9 7 12 12 C 1.41770 * 119.99966 * 185.02893 * 10 9 7 13 13 C 1.35515 * 119.99827 * 185.97051 * 12 10 9 14 14 C 1.46169 * 120.00068 * 9.44245 * 13 12 10 15 15 C 1.38245 * 125.82383 * 218.14725 * 14 13 12 16 16 C 1.39673 * 106.85956 * 179.84611 * 15 14 13 17 17 C 1.37892 * 106.90725 * 0.41224 * 16 15 14 18 18 C 1.46745 * 125.77740 * 179.76510 * 17 16 15 19 19 O 1.21586 * 119.99706 * 359.97438 * 18 17 16 20 20 O 1.34881 * 119.99759 * 180.02562 * 18 17 16 21 21 O 1.34589 * 125.82082 * 38.45466 * 14 13 12 22 22 C 1.39319 * 119.99681 * 10.35833 * 9 7 2 23 23 C 1.39091 * 119.70390 * 264.02821 * 22 9 7 24 24 C 1.38381 * 119.10069 * 179.77436 * 23 22 9 25 25 C 1.38831 * 118.48964 * 0.49002 * 24 23 22 26 26 C 1.38161 * 119.31234 * 359.51137 * 25 24 23 27 27 N 1.31862 * 120.85840 * 0.24979 * 26 25 24 28 28 H 0.97003 * 119.99916 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00170 * 5.96465 * 12 10 9 30 30 H 1.07997 * 120.00239 * 189.43997 * 13 12 10 31 31 H 1.08001 * 126.57042 * 359.97438 * 15 14 13 32 32 H 1.07996 * 126.54871 * 180.15464 * 16 15 14 33 33 H 0.96702 * 116.99820 * 180.02562 * 20 18 17 34 34 H 1.08003 * 120.44784 * 0.02562 * 23 22 9 35 35 H 1.08003 * 120.75416 * 180.25693 * 24 23 22 36 36 H 1.07993 * 120.33988 * 179.78201 * 25 24 23 37 37 H 1.08002 * 119.56835 * 180.22805 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 3.1002 1.6964 -1.2126 5 1 1.2816 2.7465 0.0006 6 1 3.1004 1.6963 1.2125 7 6 2.0084 -1.2053 -0.0005 8 1 3.0716 -1.2151 0.1887 9 7 1.3463 -2.3765 -0.2406 10 6 1.9670 -3.5555 -0.0374 11 8 3.0842 -3.5799 0.4463 12 6 1.3191 -4.7671 -0.3868 13 6 1.8896 -5.9555 -0.0726 14 6 3.0603 -5.9958 0.8017 15 6 4.1435 -6.8439 0.6649 16 6 5.0269 -6.5435 1.7043 17 6 4.4489 -5.5320 2.4421 18 6 5.0258 -4.9038 3.6363 19 8 6.1068 -5.2712 4.0543 20 8 4.3563 -3.9197 4.2707 21 8 3.2649 -5.2176 1.8805 22 6 0.0296 -2.3517 -0.6953 23 6 -1.0159 -2.4761 0.2136 24 6 -2.3190 -2.4451 -0.2511 25 6 -2.5323 -2.3006 -1.6153 26 6 -1.4461 -2.1826 -2.4610 27 7 -0.2152 -2.2106 -1.9889 28 1 -0.4850 0.8401 0.0004 29 1 0.3710 -4.7431 -0.9033 30 1 1.4793 -6.8729 -0.4682 31 1 4.2813 -7.5935 -0.1003 32 1 5.9787 -7.0162 1.8962 33 1 4.7765 -3.5362 5.0526 34 1 -0.8135 -2.5912 1.2683 35 1 -3.1511 -2.5352 0.4315 36 1 -3.5369 -2.2762 -2.0108 37 1 -1.6074 -2.0662 -3.5225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:24 Heat of formation + Delta-G solvation = -40.599435 kcal Electronic energy + Delta-G solvation = -27607.900459 eV Core-core repulsion = 23511.213454 eV Total energy + Delta-G solvation = -4096.687006 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.42775 -41.57101 -40.98729 -39.80096 -37.28846 -36.83696 -34.73012 -33.96745 -33.81944 -33.01182 -30.80343 -30.53782 -27.71474 -25.88673 -24.38774 -24.10091 -23.43436 -22.64101 -21.72576 -20.21395 -19.89358 -19.42746 -18.89455 -18.27755 -17.47727 -17.36028 -16.98356 -16.76038 -16.29633 -16.19427 -15.79894 -15.25678 -15.15765 -14.79284 -14.72546 -14.32958 -14.15674 -14.03669 -13.82375 -13.78663 -13.48344 -13.17779 -12.99506 -12.84826 -12.76626 -12.37142 -12.22472 -12.14179 -11.62212 -11.01285 -10.93168 -10.65741 -10.46892 -10.38380 -9.81669 -9.67403 -9.14878 -8.26422 -6.01710 -0.61607 0.29763 0.52198 0.74244 1.32224 1.34015 1.42472 1.53145 1.57330 1.88269 2.16317 2.34533 2.45094 2.76022 3.10261 3.21069 3.56955 3.89481 3.95666 4.12025 4.19281 4.25731 4.36645 4.52613 4.57764 4.61635 4.67181 4.79803 4.87853 5.02285 5.07157 5.16142 5.29652 5.31891 5.47743 5.49802 5.53308 5.88011 6.02861 6.06968 6.42774 6.83733 7.00974 7.24633 7.49075 7.88645 8.52291 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.004646 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.797339 B = 6025.870796 C = 7481.703160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.004 3.996 3 Si 0.989 3.011 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.082 0.918 9 N -0.404 5.404 10 C 0.456 3.544 11 O -0.599 6.599 12 C -0.171 4.171 13 C -0.027 4.027 14 C 0.065 3.935 15 C -0.204 4.204 16 C -0.102 4.102 17 C -0.112 4.112 18 C 0.576 3.424 19 O -0.524 6.524 20 O -0.506 6.506 21 O -0.132 6.132 22 C 0.403 3.597 23 C -0.133 4.133 24 C -0.069 4.069 25 C -0.179 4.179 26 C 0.093 3.907 27 N -0.532 5.532 28 H 0.275 0.725 29 H 0.139 0.861 30 H 0.215 0.785 31 H 0.201 0.799 32 H 0.183 0.817 33 H 0.434 0.566 34 H 0.100 0.900 35 H 0.157 0.843 36 H 0.167 0.833 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 -10.668 -0.570 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.200 4.200 3 Si 0.812 3.188 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.099 0.901 9 N -0.119 5.119 10 C 0.251 3.749 11 O -0.487 6.487 12 C -0.192 4.192 13 C -0.047 4.047 14 C 0.011 3.989 15 C -0.222 4.222 16 C -0.122 4.122 17 C -0.164 4.164 18 C 0.423 3.577 19 O -0.417 6.417 20 O -0.320 6.320 21 O -0.025 6.025 22 C 0.178 3.822 23 C -0.156 4.156 24 C -0.096 4.096 25 C -0.199 4.199 26 C -0.064 4.064 27 N -0.245 5.245 28 H 0.086 0.914 29 H 0.157 0.843 30 H 0.232 0.768 31 H 0.218 0.782 32 H 0.201 0.799 33 H 0.296 0.704 34 H 0.118 0.882 35 H 0.174 0.826 36 H 0.184 0.816 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.225 -10.380 -0.983 11.249 hybrid contribution 0.314 1.708 1.206 2.115 sum -3.911 -8.671 0.224 9.515 Atomic orbital electron populations 1.69797 1.06289 1.28418 1.45763 1.26011 0.96618 1.02117 0.95273 0.85056 0.78060 0.76832 0.78809 1.20067 1.19042 1.19705 1.19623 0.93888 0.83704 1.48979 0.90052 1.41234 1.10297 1.06134 1.54283 1.17494 0.87788 0.84660 0.84992 1.90686 1.21524 1.86715 1.49740 1.22408 1.00805 0.92597 1.03419 1.22097 0.90231 0.99245 0.93143 1.21851 0.98389 0.89709 0.88948 1.22478 0.93029 1.04256 1.02454 1.22309 1.01240 0.94981 0.93662 1.21330 0.90111 1.04936 0.99988 1.19022 0.81424 0.76586 0.80679 1.90902 1.21260 1.63779 1.65769 1.84743 1.52553 1.49079 1.45639 1.84413 1.33436 1.49372 1.35270 1.17788 0.84561 0.91600 0.88222 1.21621 0.93805 1.01471 0.98678 1.21586 0.95456 0.95866 0.96649 1.22242 1.01134 1.02869 0.93620 1.22860 0.86634 0.95848 1.01101 1.67224 1.26387 1.14599 1.16320 0.91445 0.84336 0.76835 0.78221 0.79939 0.70361 0.88197 0.82588 0.81556 0.81190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.07 9.91 21.70 0.22 -44.86 16 2 C 0.00 0.21 5.33 85.01 0.45 0.66 16 3 Si 0.99 43.70 29.57 68.60 2.03 45.73 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.33 -19.53 9.46 84.17 0.80 -18.73 16 8 H 0.08 5.08 7.26 -2.91 -0.02 5.06 16 9 N -0.40 -21.68 2.72 -473.56 -1.29 -22.97 16 10 C 0.46 23.15 7.19 85.11 0.61 23.77 16 11 O -0.60 -33.72 11.98 19.18 0.23 -33.49 16 12 C -0.17 -6.54 9.22 22.51 0.21 -6.33 16 13 C -0.03 -0.79 10.15 23.70 0.24 -0.55 16 14 C 0.06 2.28 5.54 24.33 0.13 2.41 16 15 C -0.20 -5.67 10.88 22.62 0.25 -5.43 16 16 C -0.10 -3.15 10.63 22.53 0.24 -2.91 16 17 C -0.11 -4.30 7.21 24.41 0.18 -4.13 16 18 C 0.58 21.02 8.31 70.05 0.58 21.60 16 19 O -0.52 -19.23 17.65 19.55 0.35 -18.89 16 20 O -0.51 -16.88 13.44 -56.50 -0.76 -17.64 16 21 O -0.13 -5.67 7.82 15.28 0.12 -5.55 16 22 C 0.40 18.90 2.07 132.94 0.28 19.17 16 23 C -0.13 -5.53 8.55 22.51 0.19 -5.34 16 24 C -0.07 -2.18 10.17 22.45 0.23 -1.95 16 25 C -0.18 -5.00 10.11 22.39 0.23 -4.77 16 26 C 0.09 3.12 11.18 84.67 0.95 4.06 16 27 N -0.53 -23.61 10.39 -193.00 -2.01 -25.61 16 28 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 29 H 0.14 4.79 7.00 -2.91 -0.02 4.77 16 30 H 0.22 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.20 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.18 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.43 8.90 9.11 -74.06 -0.67 8.23 16 34 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 36 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -81.62 338.90 4.91 -76.71 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.47 Total: 25.01 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 5.56 Total: 21.55 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -3.08 Total: -93.44 kcal Atomic # 8 Polarization: -75.50 SS G_CDS: -0.07 Total: -75.57 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -81.62 4.91 -76.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.112 kcal (2) G-P(sol) polarization free energy of solvation -81.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds