Wall clock time and date at job start Tue Mar 31 2020 15:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31242 * 1 3 3 Si 1.86794 * 120.00292 * 2 1 4 4 H 1.48500 * 109.47341 * 271.73551 * 3 2 1 5 5 H 1.48501 * 109.47183 * 31.73776 * 3 2 1 6 6 H 1.48503 * 109.47425 * 151.73582 * 3 2 1 7 7 C 1.39184 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99497 * 343.42599 * 7 2 1 9 9 N 1.36662 * 120.00378 * 163.42553 * 7 2 1 10 10 C 1.34771 * 119.99920 * 146.47563 * 9 7 2 11 11 O 1.21773 * 120.00222 * 184.79475 * 10 9 7 12 12 C 1.41772 * 120.00327 * 4.79199 * 10 9 7 13 13 C 1.35509 * 120.00378 * 174.14906 * 12 10 9 14 14 C 1.46172 * 120.00269 * 180.02562 * 13 12 10 15 15 C 1.38248 * 125.82454 * 179.71552 * 14 13 12 16 16 C 1.39673 * 106.86053 * 179.84469 * 15 14 13 17 17 C 1.37901 * 106.90440 * 0.41235 * 16 15 14 18 18 C 1.46735 * 125.77471 * 179.74668 * 17 16 15 19 19 O 1.21596 * 119.99916 * 0.02562 * 18 17 16 20 20 O 1.34884 * 119.99943 * 180.02562 * 18 17 16 21 21 O 1.34590 * 125.82094 * 0.02562 * 14 13 12 22 22 C 1.39311 * 119.99853 * 326.47621 * 9 7 2 23 23 C 1.39089 * 119.70193 * 314.07116 * 22 9 7 24 24 C 1.38384 * 119.09653 * 179.76685 * 23 22 9 25 25 C 1.38821 * 118.49479 * 0.52456 * 24 23 22 26 26 C 1.38163 * 119.31546 * 359.45299 * 25 24 23 27 27 N 1.31871 * 120.85079 * 0.30192 * 26 25 24 28 28 H 0.97009 * 119.99792 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99656 * 354.14306 * 12 10 9 30 30 H 1.07998 * 119.99966 * 359.97438 * 13 12 10 31 31 H 1.08001 * 126.56999 * 359.97438 * 15 14 13 32 32 H 1.07990 * 126.54809 * 180.15112 * 16 15 14 33 33 H 0.96697 * 116.99964 * 179.97438 * 20 18 17 34 34 H 1.07999 * 120.45203 * 0.02562 * 23 22 9 35 35 H 1.08005 * 120.75305 * 180.25300 * 24 23 22 36 36 H 1.08000 * 120.34361 * 179.73311 * 25 24 23 37 37 H 1.08000 * 119.57701 * 180.27712 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2465 1.6176 0.0000 4 1 2.4573 2.0676 -1.3994 5 1 1.4628 2.6417 0.7365 6 1 3.5619 1.4298 0.6630 7 6 2.0084 -1.2054 -0.0005 8 1 1.5019 -2.1214 0.2659 9 7 3.3324 -1.2299 -0.3382 10 6 4.1619 -2.1132 0.2516 11 8 5.3562 -2.0778 0.0163 12 6 3.6443 -3.0838 1.1460 13 6 4.4570 -4.0455 1.6469 14 6 3.9231 -5.0465 2.5687 15 6 4.6390 -6.0793 3.1449 16 6 3.7478 -6.7879 3.9540 17 6 2.5207 -6.1698 3.8359 18 6 1.2843 -6.5819 4.5101 19 8 1.2877 -7.5471 5.2495 20 8 0.1440 -5.8899 4.3095 21 8 2.6494 -5.1234 2.9966 22 6 3.8246 -0.3417 -1.2919 23 6 3.1292 -0.1530 -2.4816 24 6 3.6268 0.7359 -3.4183 25 6 4.8130 1.3997 -3.1365 26 6 5.4510 1.1640 -1.9339 27 7 4.9504 0.3148 -1.0579 28 1 -0.4850 0.8401 0.0004 29 1 2.6022 -3.0566 1.4283 30 1 5.4990 -4.0729 1.3644 31 1 5.6871 -6.2955 2.9992 32 1 3.9752 -7.6566 4.5538 33 1 -0.6450 -6.1995 4.7750 34 1 2.2111 -0.6897 -2.6701 35 1 3.1065 0.9060 -4.3493 36 1 5.2305 2.0967 -3.8481 37 1 6.3717 1.6815 -1.7084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:29 Heat of formation + Delta-G solvation = -20.406260 kcal Electronic energy + Delta-G solvation = -26529.135042 eV Core-core repulsion = 22433.323678 eV Total energy + Delta-G solvation = -4095.811364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.61791 -40.38125 -40.00254 -38.51472 -36.30873 -35.39724 -33.65970 -33.11593 -32.41232 -31.76730 -30.16247 -29.14923 -25.75164 -25.17998 -23.49035 -22.79445 -21.99578 -21.49236 -20.41727 -19.01303 -18.60672 -18.14413 -17.63649 -16.93921 -16.60088 -16.03749 -15.84360 -15.42171 -15.25848 -15.04966 -14.50883 -14.05986 -13.87948 -13.71458 -13.39588 -13.26440 -13.17443 -13.04988 -12.64748 -12.57157 -12.36908 -11.78498 -11.74860 -11.45559 -11.19681 -11.11481 -10.87241 -10.41775 -10.18827 -10.01105 -9.82701 -9.28757 -9.23052 -8.86273 -8.62125 -8.09284 -7.78244 -6.75717 -4.36477 0.31874 1.33625 1.70726 1.88812 2.29979 2.63755 2.77711 3.02167 3.12378 3.15147 3.31871 3.83240 3.97376 4.02351 4.36682 4.60292 4.71969 4.85334 5.02214 5.15883 5.29669 5.40290 5.48910 5.54919 5.58444 5.66956 5.76013 5.82494 6.02645 6.09073 6.20043 6.31383 6.34228 6.51942 6.63255 6.69622 6.88054 6.92465 7.33295 7.67463 7.69646 7.94768 8.44746 8.66605 8.95962 9.32507 10.30683 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.003292 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.184807 B = 8503.885935 C = 9654.494353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.083 3.917 3 Si 0.844 3.156 4 H -0.259 1.259 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.358 4.358 8 H 0.123 0.877 9 N -0.391 5.391 10 C 0.508 3.492 11 O -0.552 6.552 12 C -0.113 4.113 13 C -0.067 4.067 14 C 0.083 3.917 15 C -0.212 4.212 16 C -0.097 4.097 17 C -0.082 4.082 18 C 0.574 3.426 19 O -0.504 6.504 20 O -0.499 6.499 21 O -0.136 6.136 22 C 0.350 3.650 23 C -0.168 4.168 24 C -0.069 4.069 25 C -0.211 4.211 26 C 0.110 3.890 27 N -0.480 5.480 28 H 0.282 0.718 29 H 0.145 0.855 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.418 0.582 34 H 0.143 0.857 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.642 -6.171 1.445 7.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.129 4.129 3 Si 0.668 3.332 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.164 1.164 7 C -0.483 4.483 8 H 0.141 0.859 9 N -0.105 5.105 10 C 0.302 3.698 11 O -0.434 6.434 12 C -0.133 4.133 13 C -0.088 4.088 14 C 0.030 3.970 15 C -0.231 4.231 16 C -0.117 4.117 17 C -0.133 4.133 18 C 0.420 3.580 19 O -0.395 6.395 20 O -0.311 6.311 21 O -0.031 6.031 22 C 0.123 3.877 23 C -0.191 4.191 24 C -0.095 4.095 25 C -0.233 4.233 26 C -0.050 4.050 27 N -0.194 5.194 28 H 0.092 0.908 29 H 0.163 0.837 30 H 0.180 0.820 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.277 0.723 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.509 -6.162 2.077 7.913 hybrid contribution -0.893 0.914 -0.395 1.338 sum 3.616 -5.247 1.682 6.591 Atomic orbital electron populations 1.69611 1.06266 1.29009 1.42293 1.25298 0.95197 0.98529 0.93873 0.87273 0.82056 0.83198 0.80649 1.18355 1.21011 1.16365 1.19238 0.82281 0.97234 1.49589 0.85935 1.41365 1.09282 1.28526 1.31367 1.17145 0.85735 0.84745 0.82223 1.90769 1.14674 1.74640 1.63269 1.22606 1.01740 0.93327 0.95666 1.21523 1.00269 0.92164 0.94833 1.21611 0.80893 0.97282 0.97209 1.22151 1.01576 0.97184 1.02202 1.22045 0.90080 1.00333 0.99240 1.20905 0.94303 0.94755 1.03332 1.18902 0.81899 0.79533 0.77714 1.90974 1.85408 1.27013 1.36055 1.84728 1.20034 1.57469 1.68842 1.84237 1.29137 1.41486 1.48215 1.18489 0.89745 0.91387 0.88064 1.21825 1.03032 1.01427 0.92773 1.21312 0.95044 0.94465 0.98687 1.21891 0.97858 1.03884 0.99626 1.22443 0.98668 0.94101 0.89743 1.67455 1.12463 1.06577 1.32878 0.90763 0.83721 0.81975 0.81676 0.81727 0.72303 0.83924 0.85279 0.85571 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.88 13.95 55.51 0.77 -21.11 16 2 C 0.08 2.10 5.04 -17.45 -0.09 2.01 16 3 Si 0.84 20.15 24.16 -169.99 -4.11 16.04 16 4 H -0.26 -5.97 5.95 56.52 0.34 -5.63 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.24 -6.12 6.48 56.52 0.37 -5.76 16 7 C -0.36 -8.87 8.57 -15.05 -0.13 -8.99 16 8 H 0.12 3.06 6.62 -52.48 -0.35 2.72 16 9 N -0.39 -9.42 2.51 -63.68 -0.16 -9.58 16 10 C 0.51 11.65 7.32 -14.91 -0.11 11.54 16 11 O -0.55 -13.52 15.27 5.12 0.08 -13.44 16 12 C -0.11 -2.17 8.77 -39.21 -0.34 -2.52 16 13 C -0.07 -1.08 9.60 -37.37 -0.36 -1.44 16 14 C 0.08 1.22 7.02 -36.39 -0.26 0.97 16 15 C -0.21 -2.52 10.88 -39.04 -0.42 -2.94 16 16 C -0.10 -1.16 10.63 -39.17 -0.42 -1.58 16 17 C -0.08 -1.16 7.21 -36.27 -0.26 -1.42 16 18 C 0.57 7.60 8.31 34.16 0.28 7.88 16 19 O -0.50 -7.23 17.65 -19.34 -0.34 -7.57 16 20 O -0.50 -5.69 13.44 -42.52 -0.57 -6.26 16 21 O -0.14 -2.17 10.29 3.34 0.03 -2.13 16 22 C 0.35 8.17 3.26 -154.72 -0.50 7.66 16 23 C -0.17 -3.48 7.24 -39.21 -0.28 -3.77 16 24 C -0.07 -1.19 9.57 -39.31 -0.38 -1.57 16 25 C -0.21 -3.44 10.11 -39.39 -0.40 -3.83 16 26 C 0.11 2.03 11.16 -17.56 -0.20 1.84 16 27 N -0.48 -11.02 7.82 -12.36 -0.10 -11.12 16 28 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.15 2.82 6.02 -52.49 -0.32 2.51 16 30 H 0.16 2.42 7.47 -52.49 -0.39 2.03 16 31 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.17 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.42 2.42 9.11 45.56 0.42 2.83 16 34 H 0.14 2.94 7.82 -52.49 -0.41 2.53 16 35 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -32.77 334.96 -5.60 -38.37 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -2.40 Total: 7.92 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -3.86 Total: 3.84 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.52 Total: -41.81 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.80 Total: -29.41 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.11 Total: 16.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.77 -5.60 -38.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.964 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds