Wall clock time and date at job start Tue Mar 31 2020 15:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31242 * 1 3 3 Si 1.86794 * 120.00292 * 2 1 4 4 H 1.48500 * 109.47341 * 271.73551 * 3 2 1 5 5 H 1.48501 * 109.47183 * 31.73776 * 3 2 1 6 6 H 1.48503 * 109.47425 * 151.73582 * 3 2 1 7 7 C 1.39184 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99497 * 343.42599 * 7 2 1 9 9 N 1.36662 * 120.00378 * 163.42553 * 7 2 1 10 10 C 1.34771 * 119.99920 * 146.47563 * 9 7 2 11 11 O 1.21773 * 120.00222 * 184.79475 * 10 9 7 12 12 C 1.41772 * 120.00327 * 4.79199 * 10 9 7 13 13 C 1.35509 * 120.00378 * 174.14906 * 12 10 9 14 14 C 1.46172 * 120.00269 * 180.02562 * 13 12 10 15 15 C 1.38248 * 125.82454 * 179.71552 * 14 13 12 16 16 C 1.39673 * 106.86053 * 179.84469 * 15 14 13 17 17 C 1.37901 * 106.90440 * 0.41235 * 16 15 14 18 18 C 1.46735 * 125.77471 * 179.74668 * 17 16 15 19 19 O 1.21596 * 119.99916 * 0.02562 * 18 17 16 20 20 O 1.34884 * 119.99943 * 180.02562 * 18 17 16 21 21 O 1.34590 * 125.82094 * 0.02562 * 14 13 12 22 22 C 1.39311 * 119.99853 * 326.47621 * 9 7 2 23 23 C 1.39089 * 119.70193 * 314.07116 * 22 9 7 24 24 C 1.38384 * 119.09653 * 179.76685 * 23 22 9 25 25 C 1.38821 * 118.49479 * 0.52456 * 24 23 22 26 26 C 1.38163 * 119.31546 * 359.45299 * 25 24 23 27 27 N 1.31871 * 120.85079 * 0.30192 * 26 25 24 28 28 H 0.97009 * 119.99792 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99656 * 354.14306 * 12 10 9 30 30 H 1.07998 * 119.99966 * 359.97438 * 13 12 10 31 31 H 1.08001 * 126.56999 * 359.97438 * 15 14 13 32 32 H 1.07990 * 126.54809 * 180.15112 * 16 15 14 33 33 H 0.96697 * 116.99964 * 179.97438 * 20 18 17 34 34 H 1.07999 * 120.45203 * 0.02562 * 23 22 9 35 35 H 1.08005 * 120.75305 * 180.25300 * 24 23 22 36 36 H 1.08000 * 120.34361 * 179.73311 * 25 24 23 37 37 H 1.08000 * 119.57701 * 180.27712 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2465 1.6176 0.0000 4 1 2.4573 2.0676 -1.3994 5 1 1.4628 2.6417 0.7365 6 1 3.5619 1.4298 0.6630 7 6 2.0084 -1.2054 -0.0005 8 1 1.5019 -2.1214 0.2659 9 7 3.3324 -1.2299 -0.3382 10 6 4.1619 -2.1132 0.2516 11 8 5.3562 -2.0778 0.0163 12 6 3.6443 -3.0838 1.1460 13 6 4.4570 -4.0455 1.6469 14 6 3.9231 -5.0465 2.5687 15 6 4.6390 -6.0793 3.1449 16 6 3.7478 -6.7879 3.9540 17 6 2.5207 -6.1698 3.8359 18 6 1.2843 -6.5819 4.5101 19 8 1.2877 -7.5471 5.2495 20 8 0.1440 -5.8899 4.3095 21 8 2.6494 -5.1234 2.9966 22 6 3.8246 -0.3417 -1.2919 23 6 3.1292 -0.1530 -2.4816 24 6 3.6268 0.7359 -3.4183 25 6 4.8130 1.3997 -3.1365 26 6 5.4510 1.1640 -1.9339 27 7 4.9504 0.3148 -1.0579 28 1 -0.4850 0.8401 0.0004 29 1 2.6022 -3.0566 1.4283 30 1 5.4990 -4.0729 1.3644 31 1 5.6871 -6.2955 2.9992 32 1 3.9752 -7.6566 4.5538 33 1 -0.6450 -6.1995 4.7750 34 1 2.2111 -0.6897 -2.6701 35 1 3.1065 0.9060 -4.3493 36 1 5.2305 2.0967 -3.8481 37 1 6.3717 1.6815 -1.7084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:28 Heat of formation + Delta-G solvation = -43.023336 kcal Electronic energy + Delta-G solvation = -26530.115792 eV Core-core repulsion = 22433.323678 eV Total energy + Delta-G solvation = -4096.792114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.72513 -41.98622 -41.03191 -40.09941 -37.30725 -37.11530 -35.03381 -34.25412 -34.19600 -33.28844 -31.57126 -30.42124 -27.37232 -26.68233 -24.79634 -24.24928 -23.21295 -22.67146 -21.64115 -20.72872 -19.84458 -19.41566 -18.81437 -18.43623 -17.75991 -17.70430 -17.39725 -16.81481 -16.45294 -16.31766 -16.08752 -15.79050 -15.32159 -15.07438 -14.82390 -14.69642 -14.40753 -14.24010 -14.13306 -13.97224 -13.60339 -13.34676 -13.08531 -12.79716 -12.77184 -12.64662 -12.17519 -12.06200 -11.69544 -11.59310 -11.08016 -10.99210 -10.84851 -10.53410 -10.20482 -9.49608 -9.24429 -8.67470 -6.28554 -0.91391 0.05548 0.35089 0.46281 1.11437 1.21166 1.27192 1.38717 1.44195 1.73931 2.09167 2.13112 2.26057 2.38438 2.74554 3.09749 3.39227 3.72006 3.75309 4.03876 4.04730 4.15717 4.21080 4.27334 4.32497 4.41905 4.45343 4.58237 4.76924 4.87679 4.92463 5.08442 5.14752 5.27511 5.29562 5.32551 5.37362 5.76843 5.78532 5.84602 6.17234 6.67756 6.80316 7.00346 7.20467 7.60104 8.43169 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.003292 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.184807 B = 8503.885935 C = 9654.494353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.244 1.244 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.352 4.352 8 H 0.106 0.894 9 N -0.412 5.412 10 C 0.510 3.490 11 O -0.578 6.578 12 C -0.167 4.167 13 C -0.009 4.009 14 C 0.039 3.961 15 C -0.170 4.170 16 C -0.090 4.090 17 C -0.095 4.095 18 C 0.578 3.422 19 O -0.515 6.515 20 O -0.505 6.505 21 O -0.161 6.161 22 C 0.318 3.682 23 C -0.187 4.187 24 C -0.065 4.065 25 C -0.188 4.188 26 C 0.093 3.907 27 N -0.519 5.519 28 H 0.284 0.716 29 H 0.131 0.869 30 H 0.178 0.822 31 H 0.204 0.796 32 H 0.195 0.805 33 H 0.440 0.560 34 H 0.131 0.869 35 H 0.171 0.829 36 H 0.179 0.821 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -6.557 0.861 8.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.152 4.152 3 Si 0.717 3.283 4 H -0.168 1.168 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.478 4.478 8 H 0.124 0.876 9 N -0.127 5.127 10 C 0.305 3.695 11 O -0.462 6.462 12 C -0.187 4.187 13 C -0.029 4.029 14 C -0.013 4.013 15 C -0.189 4.189 16 C -0.109 4.109 17 C -0.145 4.145 18 C 0.424 3.576 19 O -0.408 6.408 20 O -0.319 6.319 21 O -0.057 6.057 22 C 0.092 3.908 23 C -0.210 4.210 24 C -0.091 4.091 25 C -0.208 4.208 26 C -0.066 4.066 27 N -0.233 5.233 28 H 0.095 0.905 29 H 0.149 0.851 30 H 0.196 0.804 31 H 0.221 0.779 32 H 0.212 0.788 33 H 0.303 0.697 34 H 0.149 0.851 35 H 0.188 0.812 36 H 0.196 0.804 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.429 -6.537 1.478 9.287 hybrid contribution -1.329 0.811 -0.137 1.563 sum 5.100 -5.725 1.341 7.784 Atomic orbital electron populations 1.69650 1.06906 1.29465 1.45004 1.25609 0.95471 0.99998 0.94148 0.86545 0.79620 0.81296 0.80796 1.16841 1.21363 1.19299 1.19062 0.82810 0.96594 1.49356 0.87631 1.41412 1.08922 1.29607 1.32728 1.17581 0.85475 0.84528 0.81940 1.90709 1.15401 1.75434 1.64693 1.22247 1.01862 0.95763 0.98852 1.21745 1.00118 0.89674 0.91350 1.21621 0.81359 0.98933 0.99402 1.22659 1.02880 0.94367 0.98989 1.22488 0.88900 1.00685 0.98855 1.21459 0.95663 0.94487 1.02920 1.18839 0.82169 0.79292 0.77337 1.90967 1.85699 1.27493 1.36592 1.84700 1.20728 1.57380 1.69128 1.84216 1.30037 1.42480 1.48982 1.18712 0.90950 0.92243 0.88904 1.21925 1.02928 1.02925 0.93204 1.21867 0.95366 0.92720 0.99145 1.22456 0.96442 1.02773 0.99143 1.23186 0.99855 0.93338 0.90189 1.67388 1.12860 1.07977 1.35102 0.90521 0.85136 0.80444 0.77881 0.78758 0.69690 0.85102 0.81156 0.80352 0.80148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.60 13.95 21.70 0.30 -47.30 16 2 C 0.06 2.95 5.04 85.01 0.43 3.37 16 3 Si 0.89 43.15 24.16 68.60 1.66 44.81 16 4 H -0.24 -10.97 5.95 99.48 0.59 -10.38 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -14.08 6.48 99.48 0.64 -13.44 16 7 C -0.35 -18.59 8.57 84.17 0.72 -17.87 16 8 H 0.11 5.76 6.62 -2.91 -0.02 5.75 16 9 N -0.41 -20.89 2.51 -473.56 -1.19 -22.07 16 10 C 0.51 24.65 7.32 85.12 0.62 25.28 16 11 O -0.58 -29.33 15.27 -4.58 -0.07 -29.40 16 12 C -0.17 -6.82 8.77 22.51 0.20 -6.62 16 13 C -0.01 -0.28 9.60 23.70 0.23 -0.05 16 14 C 0.04 1.10 7.02 24.33 0.17 1.27 16 15 C -0.17 -3.46 10.88 22.62 0.25 -3.21 16 16 C -0.09 -1.86 10.63 22.54 0.24 -1.62 16 17 C -0.09 -2.55 7.21 24.41 0.18 -2.37 16 18 C 0.58 14.71 8.31 70.04 0.58 15.29 16 19 O -0.52 -13.99 17.65 19.52 0.34 -13.65 16 20 O -0.50 -11.26 13.44 -56.53 -0.76 -12.02 16 21 O -0.16 -5.15 10.29 -9.55 -0.10 -5.25 16 22 C 0.32 15.14 3.26 132.94 0.43 15.58 16 23 C -0.19 -7.78 7.24 22.51 0.16 -7.62 16 24 C -0.07 -2.06 9.57 22.44 0.21 -1.85 16 25 C -0.19 -5.35 10.11 22.39 0.23 -5.12 16 26 C 0.09 3.24 11.16 84.67 0.95 4.19 16 27 N -0.52 -23.92 7.82 -193.01 -1.51 -25.42 16 28 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 29 H 0.13 5.62 6.02 -2.91 -0.02 5.60 16 30 H 0.18 5.10 7.47 -2.91 -0.02 5.08 16 31 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.20 2.85 8.06 -2.92 -0.02 2.83 16 33 H 0.44 4.70 9.11 -74.06 -0.67 4.03 16 34 H 0.13 5.61 7.82 -2.91 -0.02 5.59 16 35 H 0.17 3.90 8.06 -2.91 -0.02 3.88 16 36 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.18 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -76.01 334.96 4.58 -71.44 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.30 Total: 20.22 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 5.59 Total: 18.65 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -2.39 Total: -94.79 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: -0.58 Total: -60.32 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.66 Total: 44.81 kcal Total: -76.01 4.58 -71.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.415 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds