Wall clock time and date at job start Tue Mar 31 2020 15:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86799 * 120.00051 * 2 1 4 4 H 1.48496 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48513 * 109.46856 * 299.99481 * 3 2 1 6 6 H 1.48493 * 109.47517 * 59.99264 * 3 2 1 7 7 C 1.40027 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00235 * 196.97451 * 7 2 1 9 9 C 1.41545 * 120.00196 * 16.97814 * 7 2 1 10 10 C 1.41184 * 120.99452 * 203.58418 * 9 7 2 11 11 C 1.37589 * 119.01965 * 179.97438 * 10 9 7 12 12 N 1.32084 * 121.11502 * 359.97438 * 11 10 9 13 13 C 1.32488 * 122.22752 * 0.02562 * 12 11 10 14 14 N 1.39332 * 119.58594 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99678 * 5.25368 * 14 13 12 16 16 O 1.21710 * 120.00264 * 355.15163 * 15 14 13 17 17 C 1.46339 * 120.00033 * 175.14531 * 15 14 13 18 18 C 1.35262 * 120.00201 * 179.97438 * 17 15 14 19 19 C 1.46331 * 120.00484 * 180.02562 * 18 17 15 20 20 C 1.38109 * 125.82130 * 180.02562 * 19 18 17 21 21 C 1.39768 * 106.85154 * 179.76270 * 20 19 18 22 22 C 1.37813 * 106.88670 * 0.41040 * 21 20 19 23 23 C 1.46829 * 125.77446 * 179.84898 * 22 21 20 24 24 O 1.21576 * 120.00459 * 359.71251 * 23 22 21 25 25 O 1.34868 * 120.00132 * 179.71699 * 23 22 21 26 26 O 1.34560 * 125.81168 * 0.02562 * 19 18 17 27 27 C 1.38643 * 120.83432 * 0.25656 * 13 12 11 28 28 H 0.97002 * 120.00113 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.49002 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.44025 * 180.02562 * 11 10 9 31 31 H 0.96997 * 120.00135 * 185.24905 * 14 13 12 32 32 H 1.08004 * 120.00142 * 0.02562 * 17 15 14 33 33 H 1.07995 * 119.99947 * 0.02562 * 18 17 15 34 34 H 1.08005 * 126.57610 * 0.02562 * 20 19 18 35 35 H 1.08001 * 126.55200 * 180.25499 * 21 20 19 36 36 H 0.96699 * 117.00553 * 179.97438 * 25 23 22 37 37 H 1.07995 * 120.60517 * 179.73861 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3964 -1.2127 6 1 1.8827 2.3965 1.2123 7 6 2.0076 -1.2127 0.0005 8 1 3.0523 -1.2330 0.2736 9 6 1.3461 -2.4120 -0.3569 10 6 1.8236 -3.6650 0.0849 11 6 1.1487 -4.8051 -0.2864 12 7 0.0686 -4.7427 -1.0440 13 6 -0.4200 -3.5927 -1.4846 14 7 -1.5629 -3.5909 -2.2814 15 6 -2.2251 -4.7419 -2.5123 16 8 -1.7770 -5.7953 -2.0990 17 6 -3.4831 -4.7250 -3.2598 18 6 -4.1474 -5.8802 -3.4920 19 6 -5.4050 -5.8634 -4.2399 20 6 -6.1793 -6.9659 -4.5441 21 6 -7.2858 -6.4991 -5.2592 22 6 -7.1417 -5.1332 -5.3730 23 6 -8.0737 -4.2255 -6.0536 24 8 -9.0742 -4.6675 -6.5845 25 8 -7.8199 -2.9015 -6.0901 26 8 -6.0041 -4.7712 -4.7486 27 6 0.1951 -2.3913 -1.1675 28 1 -0.4850 0.8401 -0.0004 29 1 2.7055 -3.7277 0.7051 30 1 1.5077 -5.7672 0.0481 31 1 -1.8821 -2.7614 -2.6699 32 1 -3.8807 -3.7903 -3.6268 33 1 -3.7497 -6.8149 -3.1253 34 1 -5.9720 -7.9915 -4.2766 35 1 -8.0971 -7.0952 -5.6501 36 1 -8.4622 -2.3438 -6.5500 37 1 -0.2039 -1.4563 -1.5320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611601.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:20 Heat of formation + Delta-G solvation = -52.024824 kcal Electronic energy + Delta-G solvation = -25198.207860 eV Core-core repulsion = 21101.025412 eV Total energy + Delta-G solvation = -4097.182448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.00872 -40.32519 -39.69060 -37.89992 -36.62478 -34.55439 -34.00717 -33.79745 -33.47638 -30.62981 -29.99868 -28.62286 -26.06830 -25.60858 -23.31530 -22.12752 -22.00162 -21.42665 -20.45479 -19.42551 -18.84089 -18.05542 -17.72416 -17.21202 -16.96879 -16.25427 -15.60364 -15.35920 -15.24216 -14.59826 -14.38206 -14.25549 -14.16893 -13.82287 -13.58922 -13.52504 -13.09976 -12.69919 -12.66730 -12.39651 -12.38927 -12.09619 -11.51130 -11.42298 -11.25373 -10.95197 -10.85262 -10.38433 -10.33598 -10.20863 -9.83436 -9.60654 -9.40470 -8.51547 -8.06080 -7.80480 -7.09512 -6.87046 -4.66149 -0.04091 1.06481 1.91626 2.20699 2.44389 2.68710 2.74205 2.76171 2.98963 3.04244 3.19523 3.47110 3.71662 3.81007 4.26389 4.37096 4.62014 4.69305 4.90763 5.00552 5.08896 5.23174 5.46153 5.62811 5.65876 5.81784 5.89076 5.95921 6.06491 6.46811 6.51864 6.59352 6.75640 6.89009 7.04729 7.32267 7.35428 7.38925 7.69886 7.86113 8.13778 8.35233 8.62831 8.68925 8.76902 9.62170 10.00855 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015721 B = 0.002273 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.613984 B =12315.235012 C =14017.999609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.142 3.858 10 C -0.283 4.283 11 C 0.119 3.881 12 N -0.555 5.555 13 C 0.334 3.666 14 N -0.648 5.648 15 C 0.526 3.474 16 O -0.478 6.478 17 C -0.152 4.152 18 C -0.035 4.035 19 C 0.065 3.935 20 C -0.196 4.196 21 C -0.099 4.099 22 C -0.072 4.072 23 C 0.574 3.426 24 O -0.497 6.497 25 O -0.503 6.503 26 O -0.140 6.140 27 C -0.242 4.242 28 H 0.282 0.718 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.410 0.590 32 H 0.134 0.866 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.420 0.580 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.573 -4.423 -10.187 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.134 3.866 10 C -0.307 4.307 11 C -0.035 4.035 12 N -0.274 5.274 13 C 0.110 3.890 14 N -0.293 5.293 15 C 0.312 3.688 16 O -0.350 6.350 17 C -0.173 4.173 18 C -0.054 4.054 19 C 0.012 3.988 20 C -0.215 4.215 21 C -0.118 4.118 22 C -0.123 4.123 23 C 0.418 3.582 24 O -0.387 6.387 25 O -0.314 6.314 26 O -0.035 6.035 27 C -0.267 4.267 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.245 0.755 32 H 0.152 0.848 33 H 0.186 0.814 34 H 0.187 0.813 35 H 0.186 0.814 36 H 0.280 0.720 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.827 -5.876 -10.052 18.077 hybrid contribution 0.038 2.434 -0.205 2.442 sum -13.790 -3.443 -10.256 17.527 Atomic orbital electron populations 1.69784 1.07719 1.29409 1.34230 1.25973 0.94775 1.01569 0.91840 0.86209 0.81051 0.80540 0.78676 1.18243 1.19582 1.19853 1.19617 0.98000 0.90669 1.40202 0.89859 1.17576 0.89831 0.92339 0.86859 1.21903 1.05250 0.93856 1.09672 1.21767 0.90897 0.96873 0.93973 1.67219 1.15529 1.26417 1.18243 1.18141 0.87217 0.90944 0.92710 1.43278 1.26141 1.10534 1.49349 1.18215 0.84515 0.84650 0.81417 1.90913 1.66686 1.29520 1.47893 1.23453 0.95660 0.99367 0.98871 1.21556 0.88389 1.00576 0.94882 1.21517 0.95049 0.83956 0.98278 1.22251 0.95172 1.00069 1.04005 1.22133 0.99555 0.91797 0.98327 1.20963 0.90157 0.93092 1.08068 1.18884 0.82368 0.80692 0.76258 1.90999 1.26422 1.77636 1.43594 1.84675 1.54978 1.18705 1.73085 1.84159 1.30331 1.34671 1.54380 1.21552 1.02527 0.95506 1.07144 0.90695 0.87918 0.85796 0.75459 0.84830 0.81368 0.81293 0.81380 0.72025 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.97 10.93 55.55 0.61 -18.36 16 2 C 0.08 1.84 5.20 -17.34 -0.09 1.75 16 3 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.45 -11.44 9.12 -37.65 -0.34 -11.78 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.14 3.67 5.60 -106.55 -0.60 3.07 16 10 C -0.28 -6.82 9.90 -38.70 -0.38 -7.20 16 11 C 0.12 2.80 11.15 -17.68 -0.20 2.61 16 12 N -0.55 -13.85 7.84 -12.54 -0.10 -13.95 16 13 C 0.33 7.93 7.41 -154.81 -1.15 6.78 16 14 N -0.65 -12.31 5.38 -12.78 -0.07 -12.38 16 15 C 0.53 9.46 7.70 -13.00 -0.10 9.36 16 16 O -0.48 -10.38 14.49 5.18 0.08 -10.30 16 17 C -0.15 -1.97 9.67 -37.39 -0.36 -2.33 16 18 C -0.03 -0.39 9.64 -37.39 -0.36 -0.75 16 19 C 0.06 0.68 7.02 -36.38 -0.26 0.42 16 20 C -0.20 -1.67 10.88 -39.06 -0.42 -2.10 16 21 C -0.10 -0.86 10.64 -39.17 -0.42 -1.28 16 22 C -0.07 -0.75 7.21 -36.26 -0.26 -1.01 16 23 C 0.57 5.65 8.32 34.20 0.28 5.94 16 24 O -0.50 -5.72 17.65 -19.32 -0.34 -6.06 16 25 O -0.50 -3.84 13.44 -42.45 -0.57 -4.42 16 26 O -0.14 -1.60 10.29 3.56 0.04 -1.56 16 27 C -0.24 -6.00 8.62 -38.46 -0.33 -6.33 16 28 H 0.28 6.13 8.29 -40.82 -0.34 5.79 16 29 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 31 H 0.41 6.32 8.67 -40.82 -0.35 5.97 16 32 H 0.13 1.44 7.78 -52.48 -0.41 1.03 16 33 H 0.17 1.83 7.52 -52.49 -0.39 1.43 16 34 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.42 1.01 9.11 45.56 0.42 1.43 16 37 H 0.13 3.14 6.20 -52.49 -0.33 2.81 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -33.49 346.73 -7.46 -40.95 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -2.31 Total: 11.22 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -4.99 Total: -2.86 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.44 Total: -44.69 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.80 Total: -22.34 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.49 -7.46 -40.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611601.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.077 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds