Wall clock time and date at job start Tue Mar 31 2020 15:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86799 * 120.00051 * 2 1 4 4 H 1.48496 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48513 * 109.46856 * 299.99481 * 3 2 1 6 6 H 1.48493 * 109.47517 * 59.99264 * 3 2 1 7 7 C 1.40027 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00235 * 196.97451 * 7 2 1 9 9 C 1.41545 * 120.00196 * 16.97814 * 7 2 1 10 10 C 1.41184 * 120.99452 * 203.58418 * 9 7 2 11 11 C 1.37589 * 119.01965 * 179.97438 * 10 9 7 12 12 N 1.32084 * 121.11502 * 359.97438 * 11 10 9 13 13 C 1.32488 * 122.22752 * 0.02562 * 12 11 10 14 14 N 1.39332 * 119.58594 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99678 * 5.25368 * 14 13 12 16 16 O 1.21710 * 120.00264 * 355.15163 * 15 14 13 17 17 C 1.46339 * 120.00033 * 175.14531 * 15 14 13 18 18 C 1.35262 * 120.00201 * 179.97438 * 17 15 14 19 19 C 1.46331 * 120.00484 * 180.02562 * 18 17 15 20 20 C 1.38109 * 125.82130 * 180.02562 * 19 18 17 21 21 C 1.39768 * 106.85154 * 179.76270 * 20 19 18 22 22 C 1.37813 * 106.88670 * 0.41040 * 21 20 19 23 23 C 1.46829 * 125.77446 * 179.84898 * 22 21 20 24 24 O 1.21576 * 120.00459 * 359.71251 * 23 22 21 25 25 O 1.34868 * 120.00132 * 179.71699 * 23 22 21 26 26 O 1.34560 * 125.81168 * 0.02562 * 19 18 17 27 27 C 1.38643 * 120.83432 * 0.25656 * 13 12 11 28 28 H 0.97002 * 120.00113 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.49002 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.44025 * 180.02562 * 11 10 9 31 31 H 0.96997 * 120.00135 * 185.24905 * 14 13 12 32 32 H 1.08004 * 120.00142 * 0.02562 * 17 15 14 33 33 H 1.07995 * 119.99947 * 0.02562 * 18 17 15 34 34 H 1.08005 * 126.57610 * 0.02562 * 20 19 18 35 35 H 1.08001 * 126.55200 * 180.25499 * 21 20 19 36 36 H 0.96699 * 117.00553 * 179.97438 * 25 23 22 37 37 H 1.07995 * 120.60517 * 179.73861 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3964 -1.2127 6 1 1.8827 2.3965 1.2123 7 6 2.0076 -1.2127 0.0005 8 1 3.0523 -1.2330 0.2736 9 6 1.3461 -2.4120 -0.3569 10 6 1.8236 -3.6650 0.0849 11 6 1.1487 -4.8051 -0.2864 12 7 0.0686 -4.7427 -1.0440 13 6 -0.4200 -3.5927 -1.4846 14 7 -1.5629 -3.5909 -2.2814 15 6 -2.2251 -4.7419 -2.5123 16 8 -1.7770 -5.7953 -2.0990 17 6 -3.4831 -4.7250 -3.2598 18 6 -4.1474 -5.8802 -3.4920 19 6 -5.4050 -5.8634 -4.2399 20 6 -6.1793 -6.9659 -4.5441 21 6 -7.2858 -6.4991 -5.2592 22 6 -7.1417 -5.1332 -5.3730 23 6 -8.0737 -4.2255 -6.0536 24 8 -9.0742 -4.6675 -6.5845 25 8 -7.8199 -2.9015 -6.0901 26 8 -6.0041 -4.7712 -4.7486 27 6 0.1951 -2.3913 -1.1675 28 1 -0.4850 0.8401 -0.0004 29 1 2.7055 -3.7277 0.7051 30 1 1.5077 -5.7672 0.0481 31 1 -1.8821 -2.7614 -2.6699 32 1 -3.8807 -3.7903 -3.6268 33 1 -3.7497 -6.8149 -3.1253 34 1 -5.9720 -7.9915 -4.2766 35 1 -8.0971 -7.0952 -5.6501 36 1 -8.4622 -2.3438 -6.5500 37 1 -0.2039 -1.4563 -1.5320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594611601.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:20 Heat of formation + Delta-G solvation = -73.708515 kcal Electronic energy + Delta-G solvation = -25199.148135 eV Core-core repulsion = 21101.025412 eV Total energy + Delta-G solvation = -4098.122723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.77309 -41.27652 -41.04139 -39.59427 -37.31718 -36.20774 -35.52132 -35.04145 -34.24373 -32.47763 -31.10081 -30.11358 -27.92615 -26.60828 -24.39525 -23.83989 -22.98099 -22.56374 -21.67911 -20.67034 -19.60278 -19.46708 -18.78237 -18.50324 -17.74224 -17.72273 -16.99355 -16.48041 -16.35902 -16.11731 -16.05965 -15.85027 -15.45444 -14.84992 -14.68238 -14.36964 -14.29995 -14.18034 -14.17335 -13.69883 -13.38980 -13.19917 -12.92520 -12.78395 -12.66903 -12.19647 -12.08949 -11.90935 -11.77464 -11.50735 -11.17650 -11.14574 -11.11853 -9.96114 -9.63401 -9.38036 -8.86609 -8.65515 -6.56724 -0.91615 0.20826 0.82706 0.98871 1.19205 1.41467 1.42633 1.55666 1.58470 1.72087 2.03170 2.16112 2.20013 2.33989 2.81213 3.30682 3.68077 3.74730 3.86470 3.98532 4.08354 4.22041 4.37896 4.50620 4.67290 4.74274 4.82981 4.88780 4.92784 5.04752 5.11823 5.21956 5.23372 5.30807 5.47648 5.62226 5.72055 5.90305 6.12942 6.45086 6.57511 6.78119 6.78688 6.82330 7.22469 7.81539 8.25178 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015721 B = 0.002273 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.613984 B =12315.235012 C =14017.999609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.040 3.960 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.266 1.266 7 C -0.483 4.483 8 H 0.084 0.916 9 C 0.113 3.887 10 C -0.298 4.298 11 C 0.114 3.886 12 N -0.577 5.577 13 C 0.332 3.668 14 N -0.645 5.645 15 C 0.528 3.472 16 O -0.522 6.522 17 C -0.175 4.175 18 C 0.002 3.998 19 C 0.037 3.963 20 C -0.171 4.171 21 C -0.096 4.096 22 C -0.086 4.086 23 C 0.578 3.422 24 O -0.517 6.517 25 O -0.503 6.503 26 O -0.154 6.154 27 C -0.261 4.261 28 H 0.293 0.707 29 H 0.116 0.884 30 H 0.152 0.848 31 H 0.424 0.576 32 H 0.154 0.846 33 H 0.174 0.826 34 H 0.199 0.801 35 H 0.190 0.810 36 H 0.441 0.559 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.807 -4.269 -11.027 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.191 1.191 7 C -0.513 4.513 8 H 0.102 0.898 9 C 0.104 3.896 10 C -0.322 4.322 11 C -0.040 4.040 12 N -0.297 5.297 13 C 0.107 3.893 14 N -0.292 5.292 15 C 0.317 3.683 16 O -0.397 6.397 17 C -0.196 4.196 18 C -0.017 4.017 19 C -0.014 4.014 20 C -0.190 4.190 21 C -0.115 4.115 22 C -0.136 4.136 23 C 0.423 3.577 24 O -0.409 6.409 25 O -0.317 6.317 26 O -0.050 6.050 27 C -0.286 4.286 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.169 0.831 31 H 0.262 0.738 32 H 0.172 0.828 33 H 0.191 0.809 34 H 0.217 0.783 35 H 0.207 0.793 36 H 0.304 0.696 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.096 -5.696 -10.914 19.479 hybrid contribution 0.251 2.303 -0.006 2.316 sum -14.845 -3.394 -10.920 18.739 Atomic orbital electron populations 1.69814 1.09061 1.31023 1.33652 1.26828 0.95558 1.04619 0.90775 0.85081 0.79403 0.75736 0.79053 1.18160 1.18618 1.19062 1.19892 0.98310 0.91660 1.41473 0.89773 1.18018 0.90657 0.93410 0.87486 1.22087 1.06034 0.93690 1.10363 1.22241 0.90455 0.97973 0.93295 1.67359 1.16283 1.26936 1.19160 1.18393 0.88078 0.90384 0.92473 1.43312 1.25049 1.11977 1.48833 1.18894 0.85351 0.83448 0.80575 1.90876 1.68140 1.30745 1.49935 1.23097 0.94227 1.01133 1.01102 1.21668 0.87798 1.00110 0.92167 1.21476 0.95405 0.84623 0.99946 1.22678 0.93816 1.00833 1.01635 1.22500 1.00021 0.91324 0.97673 1.21350 0.90066 0.94125 1.08099 1.18838 0.81875 0.81201 0.75745 1.90990 1.27201 1.78119 1.44588 1.84641 1.55852 1.18090 1.73151 1.84132 1.30788 1.35273 1.54829 1.21538 1.03166 0.95775 1.08167 0.89624 0.86590 0.83066 0.73789 0.82813 0.80858 0.78349 0.79260 0.69557 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.34 10.93 21.84 0.24 -39.10 16 2 C 0.04 1.87 5.20 85.29 0.44 2.32 16 3 Si 0.99 35.49 29.59 68.60 2.03 37.52 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 6 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.48 -24.81 9.12 23.52 0.21 -24.59 16 8 H 0.08 4.15 7.90 -2.91 -0.02 4.12 16 9 C 0.11 5.98 5.60 -21.11 -0.12 5.86 16 10 C -0.30 -14.69 9.90 22.84 0.23 -14.46 16 11 C 0.11 5.45 11.15 84.50 0.94 6.39 16 12 N -0.58 -29.42 7.84 -193.60 -1.52 -30.94 16 13 C 0.33 16.19 7.41 132.81 0.98 17.17 16 14 N -0.65 -25.00 5.38 -312.57 -1.68 -26.69 16 15 C 0.53 19.18 7.70 86.35 0.66 19.85 16 16 O -0.52 -23.01 14.49 -4.38 -0.06 -23.07 16 17 C -0.17 -4.40 9.67 23.69 0.23 -4.17 16 18 C 0.00 0.04 9.64 23.69 0.23 0.27 16 19 C 0.04 0.70 7.02 24.35 0.17 0.88 16 20 C -0.17 -2.37 10.88 22.61 0.25 -2.12 16 21 C -0.10 -1.41 10.64 22.54 0.24 -1.17 16 22 C -0.09 -1.63 7.21 24.42 0.18 -1.45 16 23 C 0.58 10.50 8.32 70.07 0.58 11.08 16 24 O -0.52 -11.14 17.65 19.59 0.35 -10.79 16 25 O -0.50 -6.87 13.44 -56.38 -0.76 -7.63 16 26 O -0.15 -3.26 10.29 -8.87 -0.09 -3.35 16 27 C -0.26 -13.36 8.62 22.99 0.20 -13.16 16 28 H 0.29 12.63 8.29 -92.71 -0.77 11.86 16 29 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 30 H 0.15 6.16 8.06 -2.91 -0.02 6.13 16 31 H 0.42 13.34 8.67 -92.71 -0.80 12.54 16 32 H 0.15 3.18 7.78 -2.91 -0.02 3.15 16 33 H 0.17 3.50 7.52 -2.91 -0.02 3.47 16 34 H 0.20 1.49 8.06 -2.91 -0.02 1.46 16 35 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.44 1.35 9.11 -74.06 -0.67 0.67 16 37 H 0.12 6.29 6.20 -2.91 -0.02 6.27 16 Total: -1.00 -73.46 346.73 3.62 -69.84 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: -0.31 Total: 31.54 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 5.43 Total: 2.67 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -2.96 Total: -96.72 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -0.57 Total: -44.84 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.52 kcal Total: -73.46 3.62 -69.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611601.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.872 kcal (2) G-P(sol) polarization free energy of solvation -73.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds