Wall clock time and date at job start Tue Mar 31 2020 15:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86795 * 120.00494 * 2 1 4 4 H 1.48506 * 109.46860 * 270.00292 * 3 2 1 5 5 H 1.48494 * 109.47004 * 29.99994 * 3 2 1 6 6 H 1.48496 * 109.47295 * 150.00576 * 3 2 1 7 7 C 1.40036 * 119.99398 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99816 * 188.20902 * 7 2 1 9 9 C 1.41541 * 120.00106 * 8.20981 * 7 2 1 10 10 C 1.41185 * 120.99256 * 209.64871 * 9 7 2 11 11 C 1.37589 * 119.02105 * 179.97438 * 10 9 7 12 12 N 1.32081 * 121.11457 * 359.97438 * 11 10 9 13 13 C 1.32492 * 122.22504 * 0.02562 * 12 11 10 14 14 N 1.39334 * 119.58106 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99936 * 5.65361 * 14 13 12 16 16 O 1.21710 * 119.99966 * 355.18586 * 15 14 13 17 17 C 1.46341 * 120.00046 * 175.18419 * 15 14 13 18 18 C 1.35260 * 120.00297 * 173.58512 * 17 15 14 19 19 C 1.46337 * 119.99804 * 350.61099 * 18 17 15 20 20 C 1.38115 * 125.81367 * 133.06430 * 19 18 17 21 21 C 1.39768 * 106.84855 * 179.70697 * 20 19 18 22 22 C 1.37817 * 106.88584 * 0.40712 * 21 20 19 23 23 C 1.46833 * 125.77564 * 179.84684 * 22 21 20 24 24 O 1.21575 * 119.99806 * 359.72039 * 23 22 21 25 25 O 1.34868 * 119.99870 * 179.71731 * 23 22 21 26 26 O 1.34558 * 125.81480 * 313.02082 * 19 18 17 27 27 C 1.38637 * 120.83421 * 0.26893 * 13 12 11 28 28 H 0.97002 * 119.99476 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.49291 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.44241 * 180.02562 * 11 10 9 31 31 H 0.96991 * 119.99988 * 185.65464 * 14 13 12 32 32 H 1.08001 * 119.99812 * 353.58479 * 17 15 14 33 33 H 1.08005 * 120.00388 * 170.60159 * 18 17 15 34 34 H 1.08003 * 126.58119 * 359.96187 * 20 19 18 35 35 H 1.08000 * 126.55845 * 180.26040 * 21 20 19 36 36 H 0.96695 * 117.00432 * 179.97438 * 25 23 22 37 37 H 1.08001 * 120.60454 * 179.70035 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4002 5 1 1.4391 2.6525 0.7000 6 1 3.5391 1.4399 0.6999 7 6 2.0075 -1.2128 -0.0005 8 1 3.0792 -1.2178 0.1330 9 6 1.3105 -2.4322 -0.1761 10 6 1.7847 -3.6302 0.4011 11 6 1.0748 -4.7924 0.2049 12 7 -0.0356 -4.8014 -0.5102 13 6 -0.5226 -3.7051 -1.0727 14 7 -1.6992 -3.7776 -1.8155 15 6 -2.3953 -4.9306 -1.8643 16 8 -1.9523 -5.9319 -1.3328 17 6 -3.6839 -4.9787 -2.5564 18 6 -4.3209 -6.1608 -2.7184 19 6 -3.6366 -7.4118 -2.3897 20 6 -4.1632 -8.4500 -1.6465 21 6 -3.1806 -9.4420 -1.5831 22 6 -2.0896 -8.9700 -2.2805 23 6 -0.8200 -9.6821 -2.4728 24 8 -0.6639 -10.7872 -1.9907 25 8 0.1729 -9.1102 -3.1842 26 8 -2.3873 -7.7470 -2.7608 27 6 0.1264 -2.4877 -0.9357 28 1 -0.4849 0.8401 0.0004 29 1 2.6909 -3.6343 0.9888 30 1 1.4312 -5.7126 0.6437 31 1 -2.0173 -2.9983 -2.2975 32 1 -4.1262 -4.0702 -2.9378 33 1 -5.3348 -6.1815 -3.0901 34 1 -5.1472 -8.4898 -1.2031 35 1 -3.2601 -10.3951 -1.0814 36 1 0.9902 -9.6172 -3.2833 37 1 -0.2713 -1.5973 -1.3998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:24 Heat of formation + Delta-G solvation = -43.123864 kcal Electronic energy + Delta-G solvation = -26673.842413 eV Core-core repulsion = 22577.045940 eV Total energy + Delta-G solvation = -4096.796473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.44416 -39.89039 -39.59745 -37.87994 -36.15535 -34.51896 -33.81746 -33.68586 -32.88821 -30.56936 -29.66185 -28.52729 -26.01644 -25.19194 -23.15566 -21.99032 -21.76232 -21.09407 -20.36367 -19.33258 -18.39601 -17.76778 -17.70967 -17.05256 -16.41207 -15.91278 -15.35705 -15.09730 -14.83843 -14.54266 -14.23716 -14.15882 -13.79664 -13.68584 -13.36164 -13.10196 -12.95250 -12.73564 -12.62993 -12.43762 -12.24618 -11.62340 -11.44333 -11.25366 -10.97494 -10.93415 -10.32568 -10.16496 -10.15967 -9.88702 -9.73392 -9.55415 -9.40703 -8.24183 -7.96461 -7.75444 -7.05591 -6.77987 -4.64900 0.48204 1.28210 2.37509 2.50967 2.70457 2.77886 2.97227 3.00811 3.04235 3.21374 3.30022 3.60679 3.76325 3.85016 4.48257 4.68209 4.81551 4.89918 5.16981 5.18066 5.53727 5.58613 5.63500 5.72676 5.83015 5.94530 6.06698 6.31091 6.36483 6.54158 6.61250 6.76727 6.92379 6.96587 7.09197 7.33817 7.42240 7.74118 7.83278 7.90670 8.17240 8.39050 8.66560 8.73409 8.81488 9.63972 10.10306 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.003070 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.595524 B = 9119.372848 C =10183.218839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.144 3.856 10 C -0.278 4.278 11 C 0.116 3.884 12 N -0.546 5.546 13 C 0.334 3.666 14 N -0.649 5.649 15 C 0.514 3.486 16 O -0.461 6.461 17 C -0.159 4.159 18 C -0.036 4.036 19 C 0.078 3.922 20 C -0.210 4.210 21 C -0.108 4.108 22 C -0.059 4.059 23 C 0.576 3.424 24 O -0.506 6.506 25 O -0.499 6.499 26 O -0.112 6.112 27 C -0.233 4.233 28 H 0.280 0.720 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.409 0.591 32 H 0.144 0.856 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.416 0.584 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 -8.233 -7.534 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.099 0.901 9 C 0.136 3.864 10 C -0.302 4.302 11 C -0.038 4.038 12 N -0.265 5.265 13 C 0.109 3.891 14 N -0.294 5.294 15 C 0.299 3.701 16 O -0.333 6.333 17 C -0.181 4.181 18 C -0.055 4.055 19 C 0.023 3.977 20 C -0.229 4.229 21 C -0.128 4.128 22 C -0.110 4.110 23 C 0.422 3.578 24 O -0.396 6.396 25 O -0.309 6.309 26 O -0.005 6.005 27 C -0.258 4.258 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.140 0.860 31 H 0.244 0.756 32 H 0.162 0.838 33 H 0.180 0.820 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.274 0.726 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.905 -9.514 -7.273 15.541 hybrid contribution 1.062 1.851 0.101 2.136 sum -8.842 -7.663 -7.172 13.724 Atomic orbital electron populations 1.69741 1.07510 1.29162 1.36133 1.25921 0.94893 1.01342 0.92033 0.86196 0.80359 0.80201 0.79289 1.19272 1.20230 1.18568 1.19561 0.95503 0.89881 1.44113 0.90071 1.17578 0.90248 0.92229 0.86373 1.21979 1.04367 0.94842 1.08990 1.21759 0.90647 0.96412 0.94987 1.67231 1.15211 1.28307 1.15757 1.18175 0.86682 0.90912 0.93354 1.43268 1.23142 1.13752 1.49273 1.18457 0.84999 0.84124 0.82470 1.90937 1.67495 1.32364 1.42457 1.23607 0.96140 0.99105 0.99203 1.21503 0.98464 0.87565 0.97992 1.21096 0.82304 0.95471 0.98781 1.21975 1.01950 0.93464 1.05550 1.21931 0.91196 1.00780 0.98853 1.20800 0.94962 0.86820 1.08432 1.18954 0.81852 0.82338 0.74701 1.90952 1.80912 1.19561 1.48225 1.84724 1.26738 1.51743 1.67732 1.84259 1.28444 1.29276 1.58522 1.21605 1.01468 0.95234 1.07516 0.90856 0.87921 0.85986 0.75631 0.83803 0.82005 0.82308 0.82126 0.72576 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.56 10.86 55.55 0.60 -18.96 16 2 C 0.08 1.82 5.32 -17.34 -0.09 1.72 16 3 Si 0.92 17.90 29.57 -169.99 -5.03 12.87 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.74 9.12 -37.65 -0.34 -12.09 16 8 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 9 C 0.14 3.77 5.57 -106.55 -0.59 3.17 16 10 C -0.28 -6.83 9.90 -38.70 -0.38 -7.21 16 11 C 0.12 2.81 11.15 -17.68 -0.20 2.62 16 12 N -0.55 -13.88 7.84 -12.54 -0.10 -13.98 16 13 C 0.33 7.99 7.41 -154.80 -1.15 6.85 16 14 N -0.65 -12.37 5.38 -12.78 -0.07 -12.44 16 15 C 0.51 9.37 7.54 -13.00 -0.10 9.28 16 16 O -0.46 -10.22 11.19 -18.49 -0.21 -10.43 16 17 C -0.16 -1.91 10.08 -37.39 -0.38 -2.29 16 18 C -0.04 -0.38 10.15 -37.39 -0.38 -0.76 16 19 C 0.08 1.09 5.21 -36.37 -0.19 0.90 16 20 C -0.21 -2.62 10.88 -39.06 -0.42 -3.05 16 21 C -0.11 -1.48 10.64 -39.16 -0.42 -1.90 16 22 C -0.06 -0.95 7.21 -36.26 -0.26 -1.21 16 23 C 0.58 9.06 8.32 34.21 0.28 9.34 16 24 O -0.51 -8.38 17.65 -19.32 -0.34 -8.72 16 25 O -0.50 -6.92 13.44 -42.45 -0.57 -7.50 16 26 O -0.11 -1.94 8.55 -21.46 -0.18 -2.12 16 27 C -0.23 -5.83 8.58 -38.47 -0.33 -6.16 16 28 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 29 H 0.10 2.32 8.06 -52.48 -0.42 1.89 16 30 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 31 H 0.41 6.21 8.67 -40.82 -0.35 5.86 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16 34 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.42 3.39 9.11 45.56 0.42 3.80 16 37 H 0.13 3.18 6.33 -52.49 -0.33 2.85 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -35.52 341.50 -8.05 -43.57 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -2.36 Total: 13.34 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -4.95 Total: -0.79 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.44 Total: -45.37 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.30 Total: -28.77 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.52 -8.05 -43.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.446 kcal (2) G-P(sol) polarization free energy of solvation -35.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds