Wall clock time and date at job start Tue Mar 31 2020 15:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86795 * 120.00494 * 2 1 4 4 H 1.48506 * 109.46860 * 270.00292 * 3 2 1 5 5 H 1.48494 * 109.47004 * 29.99994 * 3 2 1 6 6 H 1.48496 * 109.47295 * 150.00576 * 3 2 1 7 7 C 1.40036 * 119.99398 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99816 * 188.20902 * 7 2 1 9 9 C 1.41541 * 120.00106 * 8.20981 * 7 2 1 10 10 C 1.41185 * 120.99256 * 209.64871 * 9 7 2 11 11 C 1.37589 * 119.02105 * 179.97438 * 10 9 7 12 12 N 1.32081 * 121.11457 * 359.97438 * 11 10 9 13 13 C 1.32492 * 122.22504 * 0.02562 * 12 11 10 14 14 N 1.39334 * 119.58106 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99936 * 5.65361 * 14 13 12 16 16 O 1.21710 * 119.99966 * 355.18586 * 15 14 13 17 17 C 1.46341 * 120.00046 * 175.18419 * 15 14 13 18 18 C 1.35260 * 120.00297 * 173.58512 * 17 15 14 19 19 C 1.46337 * 119.99804 * 350.61099 * 18 17 15 20 20 C 1.38115 * 125.81367 * 133.06430 * 19 18 17 21 21 C 1.39768 * 106.84855 * 179.70697 * 20 19 18 22 22 C 1.37817 * 106.88584 * 0.40712 * 21 20 19 23 23 C 1.46833 * 125.77564 * 179.84684 * 22 21 20 24 24 O 1.21575 * 119.99806 * 359.72039 * 23 22 21 25 25 O 1.34868 * 119.99870 * 179.71731 * 23 22 21 26 26 O 1.34558 * 125.81480 * 313.02082 * 19 18 17 27 27 C 1.38637 * 120.83421 * 0.26893 * 13 12 11 28 28 H 0.97002 * 119.99476 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.49291 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.44241 * 180.02562 * 11 10 9 31 31 H 0.96991 * 119.99988 * 185.65464 * 14 13 12 32 32 H 1.08001 * 119.99812 * 353.58479 * 17 15 14 33 33 H 1.08005 * 120.00388 * 170.60159 * 18 17 15 34 34 H 1.08003 * 126.58119 * 359.96187 * 20 19 18 35 35 H 1.08000 * 126.55845 * 180.26040 * 21 20 19 36 36 H 0.96695 * 117.00432 * 179.97438 * 25 23 22 37 37 H 1.08001 * 120.60454 * 179.70035 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4002 5 1 1.4391 2.6525 0.7000 6 1 3.5391 1.4399 0.6999 7 6 2.0075 -1.2128 -0.0005 8 1 3.0792 -1.2178 0.1330 9 6 1.3105 -2.4322 -0.1761 10 6 1.7847 -3.6302 0.4011 11 6 1.0748 -4.7924 0.2049 12 7 -0.0356 -4.8014 -0.5102 13 6 -0.5226 -3.7051 -1.0727 14 7 -1.6992 -3.7776 -1.8155 15 6 -2.3953 -4.9306 -1.8643 16 8 -1.9523 -5.9319 -1.3328 17 6 -3.6839 -4.9787 -2.5564 18 6 -4.3209 -6.1608 -2.7184 19 6 -3.6366 -7.4118 -2.3897 20 6 -4.1632 -8.4500 -1.6465 21 6 -3.1806 -9.4420 -1.5831 22 6 -2.0896 -8.9700 -2.2805 23 6 -0.8200 -9.6821 -2.4728 24 8 -0.6639 -10.7872 -1.9907 25 8 0.1729 -9.1102 -3.1842 26 8 -2.3873 -7.7470 -2.7608 27 6 0.1264 -2.4877 -0.9357 28 1 -0.4849 0.8401 0.0004 29 1 2.6909 -3.6343 0.9888 30 1 1.4312 -5.7126 0.6437 31 1 -2.0173 -2.9983 -2.2975 32 1 -4.1262 -4.0702 -2.9378 33 1 -5.3348 -6.1815 -3.0901 34 1 -5.1472 -8.4898 -1.2031 35 1 -3.2601 -10.3951 -1.0814 36 1 0.9902 -9.6172 -3.2833 37 1 -0.2713 -1.5973 -1.3998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594611604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:23 Heat of formation + Delta-G solvation = -66.448038 kcal Electronic energy + Delta-G solvation = -26674.853825 eV Core-core repulsion = 22577.045940 eV Total energy + Delta-G solvation = -4097.807885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.52161 -41.23787 -40.98765 -39.56916 -37.31223 -36.17645 -35.49126 -34.83084 -33.95612 -32.46017 -30.99284 -30.03446 -27.91189 -26.36717 -24.44986 -23.84382 -22.87356 -22.47750 -21.72359 -20.60521 -19.53503 -19.47732 -18.96948 -18.25182 -17.75938 -17.41252 -17.02019 -16.32729 -16.17275 -16.07493 -15.99330 -15.65197 -15.01089 -14.91199 -14.73167 -14.36594 -14.20928 -14.16982 -14.08876 -13.95386 -13.30406 -13.17963 -12.88773 -12.78795 -12.70442 -12.18018 -12.13013 -11.88801 -11.49719 -11.18464 -11.11168 -11.03790 -10.86568 -9.90377 -9.65712 -9.25073 -8.84598 -8.59480 -6.58741 -0.56985 0.20710 0.83721 0.99316 1.40069 1.41439 1.49416 1.53688 1.58003 1.84730 2.18711 2.21118 2.31124 2.43916 2.84864 3.51105 3.71592 3.74486 3.87760 4.15353 4.20825 4.42751 4.53677 4.66922 4.70533 4.80507 4.84950 4.88770 4.97455 5.07284 5.16092 5.23109 5.28689 5.43857 5.45456 5.63055 5.91569 5.93825 6.15195 6.48480 6.60072 6.77921 6.79751 6.83993 7.31547 7.82022 8.31179 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.003070 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.595524 B = 9119.372848 C =10183.218839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.038 3.962 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.490 4.490 8 H 0.081 0.919 9 C 0.116 3.884 10 C -0.293 4.293 11 C 0.109 3.891 12 N -0.569 5.569 13 C 0.333 3.667 14 N -0.646 5.646 15 C 0.502 3.498 16 O -0.507 6.507 17 C -0.172 4.172 18 C -0.008 4.008 19 C 0.056 3.944 20 C -0.203 4.203 21 C -0.104 4.104 22 C -0.102 4.102 23 C 0.575 3.425 24 O -0.525 6.525 25 O -0.506 6.506 26 O -0.142 6.142 27 C -0.250 4.250 28 H 0.291 0.709 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.424 0.576 32 H 0.193 0.807 33 H 0.223 0.777 34 H 0.198 0.802 35 H 0.178 0.822 36 H 0.435 0.565 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.669 -7.082 -8.167 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.521 4.521 8 H 0.099 0.901 9 C 0.107 3.893 10 C -0.317 4.317 11 C -0.045 4.045 12 N -0.289 5.289 13 C 0.107 3.893 14 N -0.293 5.293 15 C 0.291 3.709 16 O -0.381 6.381 17 C -0.192 4.192 18 C -0.027 4.027 19 C 0.002 3.998 20 C -0.222 4.222 21 C -0.124 4.124 22 C -0.152 4.152 23 C 0.421 3.579 24 O -0.418 6.418 25 O -0.320 6.320 26 O -0.036 6.036 27 C -0.276 4.276 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.160 0.840 31 H 0.263 0.737 32 H 0.210 0.790 33 H 0.240 0.760 34 H 0.215 0.785 35 H 0.196 0.804 36 H 0.298 0.702 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.166 -8.365 -7.937 16.763 hybrid contribution 1.692 1.412 0.297 2.224 sum -10.475 -6.953 -7.640 14.712 Atomic orbital electron populations 1.69779 1.08806 1.30751 1.35390 1.26776 0.95730 1.04374 0.90920 0.85077 0.78810 0.75461 0.79605 1.18401 1.19166 1.18516 1.19837 0.95779 0.90852 1.45601 0.90064 1.18002 0.91167 0.93123 0.86976 1.22137 1.05105 0.94793 1.09688 1.22142 0.90471 0.97167 0.94672 1.67370 1.15841 1.29018 1.16683 1.18448 0.87823 0.90196 0.92877 1.43339 1.21833 1.15263 1.48832 1.19564 0.86542 0.82796 0.81961 1.90919 1.69109 1.33627 1.44460 1.23629 0.93093 1.01916 1.00563 1.22310 1.00030 0.85268 0.95067 1.22051 0.81601 0.97246 0.98868 1.22465 1.03024 0.92160 1.04511 1.22344 0.90765 1.01656 0.97597 1.21143 0.96033 0.87438 1.10629 1.19060 0.82187 0.82145 0.74458 1.90920 1.81410 1.20218 1.49233 1.84690 1.27688 1.52337 1.67295 1.84221 1.30125 1.29798 1.59476 1.21589 1.01958 0.95617 1.08395 0.89819 0.86781 0.83966 0.73737 0.79019 0.76022 0.78505 0.80446 0.70236 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.14 10.86 21.84 0.24 -39.90 16 2 C 0.04 1.81 5.32 85.29 0.45 2.26 16 3 Si 0.99 36.06 29.57 68.60 2.03 38.08 16 4 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 5 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 6 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 7 C -0.49 -25.54 9.12 23.52 0.21 -25.33 16 8 H 0.08 4.08 7.86 -2.91 -0.02 4.05 16 9 C 0.12 6.23 5.57 -21.12 -0.12 6.11 16 10 C -0.29 -14.88 9.90 22.84 0.23 -14.66 16 11 C 0.11 5.44 11.15 84.50 0.94 6.39 16 12 N -0.57 -29.73 7.84 -193.60 -1.52 -31.25 16 13 C 0.33 16.31 7.41 132.80 0.98 17.29 16 14 N -0.65 -24.54 5.38 -312.57 -1.68 -26.22 16 15 C 0.50 17.95 7.54 86.35 0.65 18.60 16 16 O -0.51 -22.66 11.19 18.25 0.20 -22.46 16 17 C -0.17 -3.54 10.08 23.69 0.24 -3.30 16 18 C -0.01 -0.14 10.15 23.69 0.24 0.10 16 19 C 0.06 1.46 5.21 24.35 0.13 1.58 16 20 C -0.20 -4.55 10.88 22.61 0.25 -4.30 16 21 C -0.10 -2.78 10.64 22.54 0.24 -2.54 16 22 C -0.10 -3.36 7.21 24.42 0.18 -3.18 16 23 C 0.58 18.76 8.32 70.07 0.58 19.34 16 24 O -0.52 -17.93 17.65 19.59 0.35 -17.59 16 25 O -0.51 -14.68 13.44 -56.38 -0.76 -15.43 16 26 O -0.14 -4.92 8.55 15.07 0.13 -4.79 16 27 C -0.25 -12.87 8.58 22.99 0.20 -12.68 16 28 H 0.29 12.70 8.29 -92.71 -0.77 11.93 16 29 H 0.11 5.31 8.06 -2.91 -0.02 5.29 16 30 H 0.14 6.24 8.06 -2.91 -0.02 6.22 16 31 H 0.42 12.62 8.67 -92.71 -0.80 11.81 16 32 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.22 1.02 8.06 -2.91 -0.02 0.99 16 34 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.18 3.92 8.06 -2.91 -0.02 3.89 16 36 H 0.44 7.48 9.11 -74.06 -0.67 6.81 16 37 H 0.13 6.39 6.33 -2.91 -0.02 6.37 16 Total: -1.00 -81.51 341.50 4.08 -77.43 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -0.31 Total: 36.43 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.40 Total: 5.70 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -2.96 Total: -97.37 kcal Atomic # 8 Polarization: -60.19 SS G_CDS: -0.08 Total: -60.27 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.08 kcal Total: -81.51 4.08 -77.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.978 kcal (2) G-P(sol) polarization free energy of solvation -81.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds