Wall clock time and date at job start Tue Mar 31 2020 16:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 116.99778 * 2 1 4 4 O 1.20826 * 119.99862 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00145 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47071 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.47048 * 180.02562 * 6 5 3 8 8 C 1.36934 * 120.00173 * 89.99857 * 7 6 5 9 9 H 1.08003 * 119.99828 * 210.33540 * 8 7 6 10 10 C 1.38806 * 120.00247 * 30.05428 * 8 7 6 11 11 N 1.31617 * 120.00457 * 210.96590 * 10 8 7 12 12 Si 1.86803 * 119.99612 * 30.96626 * 10 8 7 13 13 H 1.48502 * 109.47302 * 358.69687 * 12 10 8 14 14 H 1.48499 * 109.46954 * 118.70054 * 12 10 8 15 15 H 1.48503 * 109.47104 * 238.69388 * 12 10 8 16 16 C 1.46504 * 119.99961 * 269.99821 * 7 6 5 17 17 H 1.09000 * 109.46993 * 5.12307 * 16 7 6 18 18 C 1.52997 * 109.47040 * 125.12260 * 16 7 6 19 19 C 1.50698 * 109.46905 * 245.12803 * 16 7 6 20 20 N 1.29395 * 124.70647 * 312.25899 * 19 16 7 21 21 C 1.30911 * 117.46674 * 179.97438 * 20 19 16 22 22 C 1.36754 * 113.93523 * 0.02562 * 21 20 19 23 23 C 1.46500 * 126.18280 * 179.97438 * 22 21 20 24 24 O 1.21608 * 120.00505 * 180.02562 * 23 22 21 25 25 O 1.34878 * 119.99898 * 0.02983 * 23 22 21 26 26 S 1.70928 * 124.70674 * 131.96557 * 19 16 7 27 27 H 1.09003 * 109.46922 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47916 * 299.99570 * 1 2 3 29 29 H 1.09003 * 109.47428 * 60.00234 * 1 2 3 30 30 H 1.08996 * 109.47012 * 59.99981 * 5 3 2 31 31 H 1.09003 * 109.47060 * 300.00587 * 5 3 2 32 32 H 1.08999 * 109.47626 * 60.00344 * 6 5 3 33 33 H 1.09004 * 109.47117 * 299.99386 * 6 5 3 34 34 H 0.97000 * 120.00261 * 179.97438 * 11 10 8 35 35 H 1.09007 * 109.46732 * 185.98616 * 18 16 7 36 36 H 1.08991 * 109.47549 * 305.99108 * 18 16 7 37 37 H 1.09005 * 109.47044 * 65.99292 * 18 16 7 38 38 H 1.08003 * 123.03306 * 179.97438 * 21 20 19 39 39 H 0.96696 * 117.00578 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7422 0.0011 7 7 5.4630 2.8190 0.0011 8 6 6.1467 2.8552 -1.1848 9 1 7.1392 2.4343 -1.2490 10 6 5.5618 3.4278 -2.3059 11 7 5.8584 2.9762 -3.5061 12 14 4.3539 4.8393 -2.1112 13 1 4.1682 5.1365 -0.6681 14 1 4.8841 6.0432 -2.8003 15 1 3.0490 4.4604 -2.7105 16 6 6.1945 2.8569 1.2698 17 1 5.4956 2.7281 2.0962 18 6 7.2287 1.7297 1.2961 19 6 6.8946 4.1844 1.4064 20 7 7.6105 4.7384 0.4818 21 6 8.1554 5.8973 0.7531 22 6 7.8779 6.3604 2.0096 23 6 8.3478 7.6206 2.5903 24 8 8.0314 7.9227 3.7249 25 8 9.1314 8.4459 1.8663 26 16 6.8473 5.1706 2.8017 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.9563 0.7807 -0.8891 31 1 3.9557 0.7810 0.8908 32 1 3.6099 3.2361 0.8911 33 1 3.6106 3.2365 -0.8890 34 1 5.4494 3.3761 -4.2895 35 1 7.6988 1.6908 2.2788 36 1 6.7358 0.7795 1.0912 37 1 7.9885 1.9160 0.5370 38 1 8.7695 6.4386 0.0485 39 1 9.4170 9.2658 2.2921 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598855011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:47 Heat of formation + Delta-G solvation = -97.859223 kcal Electronic energy + Delta-G solvation = -25882.751560 eV Core-core repulsion = 21919.025535 eV Total energy + Delta-G solvation = -3963.726025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -40.21252 -40.02751 -39.09436 -37.01700 -36.14764 -35.97071 -32.78044 -32.02513 -30.02667 -29.16863 -27.47246 -25.84929 -24.74785 -23.29417 -22.67660 -21.32073 -20.46725 -19.28799 -18.05971 -17.60021 -17.32994 -16.48017 -16.41666 -16.34165 -16.19582 -15.61824 -15.27533 -14.72611 -14.16412 -13.88120 -13.83104 -13.56360 -13.30110 -13.22698 -12.98716 -12.48302 -12.35345 -12.06779 -11.79441 -11.75126 -11.54206 -11.42162 -11.24181 -11.02680 -10.82748 -10.72063 -10.67274 -10.49908 -10.23821 -10.08682 -9.63745 -9.09173 -8.94376 -8.75981 -8.51281 -7.33868 -6.26755 -3.43971 0.45124 1.46545 2.07993 2.48466 2.55778 2.93452 3.27905 3.33400 3.39114 3.42983 3.46683 4.34342 4.50580 4.67625 5.09629 5.13544 5.16751 5.20329 5.28023 5.34343 5.48116 5.51990 5.61556 5.64329 5.67144 5.89981 5.97394 6.15269 6.34148 6.37502 6.44907 6.48332 6.51159 6.65114 6.83603 7.64790 7.91346 7.99550 8.08613 8.26928 8.70905 9.43501 9.71957 10.85691 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.003958 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.964971 B = 7073.330761 C = 7725.546517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.514 6.514 5 C -0.130 4.130 6 C 0.158 3.842 7 N -0.571 5.571 8 C -0.230 4.230 9 H 0.101 0.899 10 C 0.047 3.953 11 N -0.866 5.866 12 Si 0.853 3.147 13 H -0.268 1.268 14 H -0.295 1.295 15 H -0.287 1.287 16 C 0.230 3.770 17 H 0.077 0.923 18 C -0.146 4.146 19 C 0.077 3.923 20 N -0.448 5.448 21 C 0.145 3.855 22 C -0.338 4.338 23 C 0.571 3.429 24 O -0.528 6.528 25 O -0.509 6.509 26 S 0.143 5.857 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.267 0.733 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.180 0.820 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 -1.840 9.826 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.402 6.402 5 C -0.170 4.170 6 C 0.032 3.968 7 N -0.289 5.289 8 C -0.360 4.360 9 H 0.118 0.882 10 C -0.157 4.157 11 N -0.504 5.504 12 Si 0.681 3.319 13 H -0.193 1.193 14 H -0.222 1.222 15 H -0.214 1.214 16 C 0.119 3.881 17 H 0.095 0.905 18 C -0.206 4.206 19 C -0.199 4.199 20 N -0.160 5.160 21 C -0.018 4.018 22 C -0.461 4.461 23 C 0.415 3.585 24 O -0.419 6.419 25 O -0.320 6.320 26 S 0.403 5.597 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.137 0.863 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.197 0.803 39 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -1.818 -2.239 10.282 10.679 hybrid contribution -0.279 2.440 -0.547 2.516 sum -2.097 0.201 9.735 9.961 Atomic orbital electron populations 1.23187 0.77279 1.03184 1.02313 1.86553 1.22808 1.34232 1.84397 1.24306 0.92670 0.80933 0.71500 1.90647 1.67511 1.36417 1.45634 1.22196 0.85148 1.03275 1.06363 1.20911 0.83378 0.91467 1.01017 1.44854 1.00842 1.81242 1.01935 1.18863 1.02793 1.31350 0.82995 0.88164 1.25308 0.97769 0.97525 0.95085 1.69923 1.43541 1.38839 0.98143 0.87220 0.80753 0.85326 0.78552 1.19330 1.22232 1.21428 1.19628 0.92180 0.86328 0.89940 0.90450 1.22101 0.99637 0.97832 1.01043 1.29609 0.96333 1.03077 0.90879 1.66136 1.10541 1.09128 1.30199 1.22857 0.95637 0.90568 0.92739 1.24507 1.17127 1.02233 1.02243 1.19167 0.74615 0.82195 0.82502 1.90909 1.56585 1.75225 1.19221 1.84598 1.63654 1.34693 1.49091 1.83869 1.44780 1.11850 1.19167 0.88486 0.92215 0.92129 0.86348 0.88062 0.92777 0.92148 0.92249 0.93448 0.91444 0.91027 0.80277 0.72978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.55 101.05 1.07 1.45 16 2 O -0.36 -5.23 10.57 -39.26 -0.41 -5.65 16 3 C 0.46 7.72 7.96 36.01 0.29 8.01 16 4 O -0.51 -10.02 15.73 -18.75 -0.29 -10.32 16 5 C -0.13 -2.11 6.13 -27.88 -0.17 -2.28 16 6 C 0.16 3.11 3.47 -4.04 -0.01 3.10 16 7 N -0.57 -11.60 2.12 -166.98 -0.35 -11.95 16 8 C -0.23 -5.54 8.14 -15.06 -0.12 -5.66 16 9 H 0.10 2.61 6.88 -52.48 -0.36 2.25 16 10 C 0.05 1.24 5.19 -17.43 -0.09 1.15 16 11 N -0.87 -24.12 13.97 55.49 0.78 -23.34 16 12 Si 0.85 21.52 25.26 -169.99 -4.29 17.23 16 13 H -0.27 -6.73 6.45 56.52 0.36 -6.36 16 14 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 16 C 0.23 3.91 3.24 -69.08 -0.22 3.69 16 17 H 0.08 1.12 7.83 -51.93 -0.41 0.71 16 18 C -0.15 -2.19 8.92 37.16 0.33 -1.86 16 19 C 0.08 1.39 6.19 -13.31 -0.08 1.31 16 20 N -0.45 -8.90 9.27 -11.26 -0.10 -9.00 16 21 C 0.15 2.54 11.20 -18.48 -0.21 2.34 16 22 C -0.34 -5.72 6.51 -36.79 -0.24 -5.96 16 23 C 0.57 8.93 8.30 34.06 0.28 9.22 16 24 O -0.53 -9.36 17.75 -19.35 -0.34 -9.71 16 25 O -0.51 -6.06 13.23 -40.98 -0.54 -6.61 16 26 S 0.14 2.34 23.00 -107.50 -2.47 -0.14 16 27 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 30 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 31 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.05 1.01 7.92 -51.93 -0.41 0.59 16 33 H 0.06 1.38 3.29 -51.93 -0.17 1.21 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.24 7.07 -51.93 -0.37 0.87 16 38 H 0.18 2.74 8.06 -52.48 -0.42 2.31 16 39 H 0.41 2.76 9.11 45.56 0.42 3.18 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -32.56 352.83 -5.77 -38.33 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.86 Total: 1.35 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 0.82 Total: 14.49 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.32 Total: -44.30 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.60 Total: -32.28 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.29 Total: 17.23 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.47 Total: -0.14 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.56 -5.77 -38.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598855011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.534 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds