Wall clock time and date at job start Tue Mar 31 2020 16:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 116.99778 * 2 1 4 4 O 1.20826 * 119.99862 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00145 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47071 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.47048 * 180.02562 * 6 5 3 8 8 C 1.36934 * 120.00173 * 89.99857 * 7 6 5 9 9 H 1.08003 * 119.99828 * 210.33540 * 8 7 6 10 10 C 1.38806 * 120.00247 * 30.05428 * 8 7 6 11 11 N 1.31617 * 120.00457 * 210.96590 * 10 8 7 12 12 Si 1.86803 * 119.99612 * 30.96626 * 10 8 7 13 13 H 1.48502 * 109.47302 * 358.69687 * 12 10 8 14 14 H 1.48499 * 109.46954 * 118.70054 * 12 10 8 15 15 H 1.48503 * 109.47104 * 238.69388 * 12 10 8 16 16 C 1.46504 * 119.99961 * 269.99821 * 7 6 5 17 17 H 1.09000 * 109.46993 * 5.12307 * 16 7 6 18 18 C 1.52997 * 109.47040 * 125.12260 * 16 7 6 19 19 C 1.50698 * 109.46905 * 245.12803 * 16 7 6 20 20 N 1.29395 * 124.70647 * 312.25899 * 19 16 7 21 21 C 1.30911 * 117.46674 * 179.97438 * 20 19 16 22 22 C 1.36754 * 113.93523 * 0.02562 * 21 20 19 23 23 C 1.46500 * 126.18280 * 179.97438 * 22 21 20 24 24 O 1.21608 * 120.00505 * 180.02562 * 23 22 21 25 25 O 1.34878 * 119.99898 * 0.02983 * 23 22 21 26 26 S 1.70928 * 124.70674 * 131.96557 * 19 16 7 27 27 H 1.09003 * 109.46922 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47916 * 299.99570 * 1 2 3 29 29 H 1.09003 * 109.47428 * 60.00234 * 1 2 3 30 30 H 1.08996 * 109.47012 * 59.99981 * 5 3 2 31 31 H 1.09003 * 109.47060 * 300.00587 * 5 3 2 32 32 H 1.08999 * 109.47626 * 60.00344 * 6 5 3 33 33 H 1.09004 * 109.47117 * 299.99386 * 6 5 3 34 34 H 0.97000 * 120.00261 * 179.97438 * 11 10 8 35 35 H 1.09007 * 109.46732 * 185.98616 * 18 16 7 36 36 H 1.08991 * 109.47549 * 305.99108 * 18 16 7 37 37 H 1.09005 * 109.47044 * 65.99292 * 18 16 7 38 38 H 1.08003 * 123.03306 * 179.97438 * 21 20 19 39 39 H 0.96696 * 117.00578 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7422 0.0011 7 7 5.4630 2.8190 0.0011 8 6 6.1467 2.8552 -1.1848 9 1 7.1392 2.4343 -1.2490 10 6 5.5618 3.4278 -2.3059 11 7 5.8584 2.9762 -3.5061 12 14 4.3539 4.8393 -2.1112 13 1 4.1682 5.1365 -0.6681 14 1 4.8841 6.0432 -2.8003 15 1 3.0490 4.4604 -2.7105 16 6 6.1945 2.8569 1.2698 17 1 5.4956 2.7281 2.0962 18 6 7.2287 1.7297 1.2961 19 6 6.8946 4.1844 1.4064 20 7 7.6105 4.7384 0.4818 21 6 8.1554 5.8973 0.7531 22 6 7.8779 6.3604 2.0096 23 6 8.3478 7.6206 2.5903 24 8 8.0314 7.9227 3.7249 25 8 9.1314 8.4459 1.8663 26 16 6.8473 5.1706 2.8017 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.9563 0.7807 -0.8891 31 1 3.9557 0.7810 0.8908 32 1 3.6099 3.2361 0.8911 33 1 3.6106 3.2365 -0.8890 34 1 5.4494 3.3761 -4.2895 35 1 7.6988 1.6908 2.2788 36 1 6.7358 0.7795 1.0912 37 1 7.9885 1.9160 0.5370 38 1 8.7695 6.4386 0.0485 39 1 9.4170 9.2658 2.2921 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598855011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:41 Heat of formation + Delta-G solvation = -121.056773 kcal Electronic energy + Delta-G solvation = -25883.757481 eV Core-core repulsion = 21919.025535 eV Total energy + Delta-G solvation = -3964.731946 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -41.48130 -41.30417 -40.49503 -38.46919 -37.43945 -37.12839 -34.32148 -33.64076 -31.45006 -30.56389 -28.55469 -27.22234 -26.32680 -24.67118 -24.03579 -22.76853 -21.74787 -20.66659 -19.42899 -18.98340 -18.62092 -17.97311 -17.78042 -17.62657 -17.52085 -16.88372 -16.81632 -16.18522 -15.65109 -15.32505 -15.17653 -14.92182 -14.57820 -14.48381 -14.42376 -14.13388 -13.83712 -13.43945 -13.07038 -12.96233 -12.86067 -12.69534 -12.65484 -12.58356 -12.38764 -12.11131 -12.04941 -11.81522 -11.75240 -11.57384 -11.41529 -10.62221 -10.51796 -10.38836 -9.89401 -9.02885 -8.18772 -5.37329 -0.88341 0.09936 0.64184 1.19659 1.24492 1.26658 1.37502 1.40853 1.79061 2.02873 2.18083 2.41626 2.97811 3.28778 3.34915 3.91848 3.94561 4.02741 4.09746 4.27409 4.33622 4.34276 4.35513 4.38804 4.56951 4.60882 4.71542 4.91296 5.00088 5.06456 5.12829 5.19473 5.40962 5.42449 5.59356 5.90662 6.26849 6.74234 6.79301 6.88665 6.97044 7.64011 7.96153 9.00167 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.003958 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.964971 B = 7073.330761 C = 7725.546517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.548 6.548 5 C -0.120 4.120 6 C 0.156 3.844 7 N -0.585 5.585 8 C -0.194 4.194 9 H 0.077 0.923 10 C 0.003 3.997 11 N -0.925 5.925 12 Si 0.888 3.112 13 H -0.265 1.265 14 H -0.318 1.318 15 H -0.307 1.307 16 C 0.224 3.776 17 H 0.115 0.885 18 C -0.137 4.137 19 C 0.067 3.933 20 N -0.482 5.482 21 C 0.134 3.866 22 C -0.340 4.340 23 C 0.579 3.421 24 O -0.547 6.547 25 O -0.496 6.496 26 S 0.212 5.788 27 H 0.135 0.865 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.140 0.860 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.258 0.742 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.196 0.804 39 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -1.919 13.733 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.312 3.688 4 O -0.439 6.439 5 C -0.160 4.160 6 C 0.031 3.969 7 N -0.305 5.305 8 C -0.324 4.324 9 H 0.094 0.906 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.721 3.279 13 H -0.190 1.190 14 H -0.247 1.247 15 H -0.235 1.235 16 C 0.114 3.886 17 H 0.133 0.867 18 C -0.197 4.197 19 C -0.209 4.209 20 N -0.195 5.195 21 C -0.028 4.028 22 C -0.463 4.463 23 C 0.424 3.576 24 O -0.440 6.440 25 O -0.311 6.311 26 S 0.472 5.528 27 H 0.153 0.847 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.124 0.876 31 H 0.157 0.843 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.213 0.787 39 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -1.379 -2.302 14.228 14.479 hybrid contribution -0.202 2.610 -1.254 2.902 sum -1.582 0.308 12.974 13.074 Atomic orbital electron populations 1.23537 0.75192 1.05692 1.02260 1.86528 1.24803 1.32740 1.83720 1.24304 0.92803 0.81054 0.70642 1.90637 1.68228 1.37622 1.47394 1.22023 0.85184 1.01230 1.07566 1.20875 0.82998 0.93326 0.99720 1.44590 1.00937 1.83051 1.01969 1.18507 1.01003 1.28647 0.84291 0.90560 1.25481 0.99059 0.99497 0.95343 1.70000 1.47152 1.41273 0.98492 0.86674 0.79184 0.84367 0.77712 1.18989 1.24750 1.23519 1.19916 0.93175 0.86239 0.89294 0.86710 1.22015 0.98415 0.97418 1.01876 1.29670 0.96480 1.03151 0.91563 1.66181 1.11267 1.10383 1.31668 1.23104 0.95802 0.90450 0.93446 1.24955 1.16567 1.02843 1.01916 1.18928 0.74577 0.82080 0.82062 1.90918 1.57435 1.75636 1.20050 1.84550 1.62297 1.35623 1.48594 1.83640 1.42444 1.09709 1.16970 0.84716 0.91647 0.92897 0.87553 0.84258 0.91549 0.95838 0.93274 0.90318 0.90202 0.93915 0.78710 0.69982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.55 113.37 1.20 1.73 16 2 O -0.36 -9.81 10.57 -51.43 -0.54 -10.35 16 3 C 0.47 15.14 7.96 71.24 0.57 15.71 16 4 O -0.55 -21.25 15.73 21.96 0.35 -20.91 16 5 C -0.12 -3.75 6.13 29.85 0.18 -3.57 16 6 C 0.16 6.04 3.47 86.38 0.30 6.34 16 7 N -0.59 -23.27 2.12 -682.20 -1.45 -24.72 16 8 C -0.19 -9.57 8.14 84.03 0.68 -8.88 16 9 H 0.08 4.11 6.88 -2.91 -0.02 4.09 16 10 C 0.00 0.17 5.19 84.86 0.44 0.61 16 11 N -0.92 -54.88 13.97 21.65 0.30 -54.58 16 12 Si 0.89 46.73 25.26 68.60 1.73 48.47 16 13 H -0.27 -13.41 6.45 99.48 0.64 -12.77 16 14 H -0.32 -17.42 7.11 99.48 0.71 -16.72 16 15 H -0.31 -16.68 7.11 99.48 0.71 -15.97 16 16 C 0.22 6.97 3.24 44.24 0.14 7.11 16 17 H 0.12 2.75 7.83 -2.39 -0.02 2.73 16 18 C -0.14 -3.72 8.92 71.98 0.64 -3.08 16 19 C 0.07 2.26 6.19 88.47 0.55 2.80 16 20 N -0.48 -18.46 9.27 -189.53 -1.76 -20.21 16 21 C 0.13 4.41 11.20 84.48 0.95 5.35 16 22 C -0.34 -10.40 6.51 24.08 0.16 -10.24 16 23 C 0.58 16.04 8.30 69.98 0.58 16.63 16 24 O -0.55 -17.42 17.75 19.48 0.35 -17.08 16 25 O -0.50 -9.95 13.23 -57.92 -0.77 -10.72 16 26 S 0.21 6.08 23.00 -56.49 -1.30 4.78 16 27 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 29 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 30 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 31 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.07 2.35 7.92 -2.39 -0.02 2.33 16 33 H 0.02 1.10 3.29 -2.38 -0.01 1.09 16 34 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 1.42 7.07 -2.38 -0.02 1.40 16 38 H 0.20 5.60 8.06 -2.91 -0.02 5.57 16 39 H 0.44 4.05 9.11 -74.06 -0.67 3.38 16 Total: -1.00 -74.76 352.83 3.67 -71.09 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 0.37 Total: 3.72 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: 6.39 Total: 30.51 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -2.90 Total: -99.51 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -0.62 Total: -59.06 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.73 Total: 48.47 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.30 Total: 4.78 kcal Total: -74.76 3.67 -71.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598855011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.968 kcal (2) G-P(sol) polarization free energy of solvation -74.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds