Wall clock time and date at job start Tue Mar 31 2020 16:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34878 * 117.00150 * 2 1 4 4 O 1.21608 * 119.99596 * 0.02562 * 3 2 1 5 5 C 1.46500 * 119.99898 * 180.02562 * 3 2 1 6 6 C 1.36754 * 126.18280 * 0.02983 * 5 3 2 7 7 N 1.30911 * 113.93523 * 179.97438 * 6 5 3 8 8 C 1.29395 * 117.46674 * 0.02562 * 7 6 5 9 9 C 1.50698 * 124.70647 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46890 * 192.26331 * 9 8 7 11 11 C 1.52997 * 109.47715 * 72.26028 * 9 8 7 12 12 N 1.46504 * 109.46905 * 312.25899 * 9 8 7 13 13 C 1.36934 * 119.99867 * 65.12767 * 12 9 8 14 14 H 1.08003 * 119.99828 * 30.33576 * 13 12 9 15 15 C 1.38806 * 120.00247 * 210.05464 * 13 12 9 16 16 N 1.31617 * 120.00457 * 210.96590 * 15 13 12 17 17 Si 1.86803 * 119.99612 * 30.96626 * 15 13 12 18 18 H 1.48502 * 109.47302 * 358.69687 * 17 15 13 19 19 H 1.48499 * 109.46954 * 118.70054 * 17 15 13 20 20 H 1.48503 * 109.47104 * 238.69388 * 17 15 13 21 21 C 1.46504 * 119.99961 * 245.12803 * 12 9 8 22 22 C 1.52994 * 109.47048 * 269.99821 * 21 12 9 23 23 C 1.50702 * 109.47071 * 180.02562 * 22 21 12 24 24 O 1.20826 * 119.99993 * 0.02562 * 23 22 21 25 25 O 1.34231 * 120.00145 * 180.02562 * 23 22 21 26 26 S 1.70928 * 110.58625 * 0.23950 * 8 7 6 27 27 H 1.09001 * 109.47036 * 299.99778 * 1 2 3 28 28 H 1.08995 * 109.47465 * 59.99708 * 1 2 3 29 29 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.08003 * 123.03170 * 0.03677 * 6 5 3 31 31 H 1.09007 * 109.46732 * 65.98569 * 11 9 8 32 32 H 1.08991 * 109.47549 * 185.99061 * 11 9 8 33 33 H 1.09005 * 109.47044 * 305.99245 * 11 9 8 34 34 H 0.97000 * 120.00261 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.46778 * 30.00182 * 21 12 9 36 36 H 1.09004 * 109.46509 * 150.00248 * 21 12 9 37 37 H 1.08996 * 109.47686 * 300.00365 * 22 21 12 38 38 H 1.09003 * 109.47190 * 60.00252 * 22 21 12 39 39 H 0.96697 * 116.99636 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4020 2.2216 0.0005 5 6 3.5274 1.2784 -0.0006 6 6 4.3913 0.2183 -0.0017 7 7 5.6544 0.5625 -0.0025 8 6 5.9283 1.8272 -0.0017 9 6 7.3207 2.4035 -0.0018 10 1 7.2724 3.4701 0.2173 11 6 7.9595 2.1936 -1.3761 12 7 8.1276 1.7312 1.0196 13 6 8.4171 0.3985 0.8956 14 1 8.5093 -0.0452 -0.0847 15 6 8.5980 -0.3808 2.0299 16 7 9.4219 -1.4068 1.9990 17 14 7.6721 0.0265 3.6004 18 1 6.8396 1.2371 3.3843 19 1 6.7983 -1.1157 3.9702 20 1 8.6426 0.2820 4.6950 21 6 8.6246 2.4846 2.1735 22 6 9.9969 3.0754 1.8441 23 6 10.5085 3.8499 3.0314 24 8 9.8439 3.9216 4.0379 25 8 11.7025 4.4602 2.9707 26 16 4.4917 2.7533 0.0071 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0614 -0.8101 -0.0029 31 1 7.4210 2.7802 -2.1205 32 1 9.0010 2.5134 -1.3454 33 1 7.9115 1.1374 -1.6416 34 1 9.5485 -1.9512 2.7918 35 1 7.9290 3.2902 2.4083 36 1 8.7124 1.8184 3.0318 37 1 10.6925 2.2698 1.6092 38 1 9.9092 3.7415 0.9857 39 1 11.9880 4.9452 3.7570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599007582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:21 Heat of formation + Delta-G solvation = -97.941408 kcal Electronic energy + Delta-G solvation = -25854.408179 eV Core-core repulsion = 21890.678590 eV Total energy + Delta-G solvation = -3963.729589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 3.94 seconds Orbital eigenvalues (eV) -40.24087 -39.97967 -39.14940 -36.91273 -36.31258 -35.85669 -32.78366 -31.99023 -30.22165 -29.07891 -27.43280 -25.70434 -24.98806 -23.54752 -22.26207 -21.21442 -20.70455 -19.22941 -18.05089 -17.82087 -17.20651 -16.57598 -16.34085 -16.27603 -16.09549 -15.87461 -15.12812 -14.66289 -14.29248 -14.08669 -13.59402 -13.53799 -13.31119 -13.14734 -13.00337 -12.56695 -12.25932 -12.24257 -11.94190 -11.74462 -11.45705 -11.30279 -11.19803 -11.02416 -10.84111 -10.80008 -10.67127 -10.50047 -10.31040 -10.09841 -9.63512 -9.07694 -8.93444 -8.75468 -8.50108 -7.33587 -6.25986 -3.43795 0.46442 1.43861 2.08459 2.48945 2.55752 2.97639 3.25816 3.31436 3.39646 3.44528 3.47422 4.35542 4.51888 4.71197 5.00157 5.01507 5.08491 5.10538 5.30999 5.39105 5.41567 5.49058 5.56473 5.64446 5.74772 5.91011 5.99854 6.15969 6.28943 6.34549 6.38182 6.49373 6.53381 6.72880 6.83696 7.65490 7.76642 8.08546 8.13581 8.27455 8.71581 9.44270 9.72591 10.86548 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003906 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.346737 B = 7166.062976 C = 7739.996958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.352 6.352 3 C 0.553 3.447 4 O -0.519 6.519 5 C -0.335 4.335 6 C 0.144 3.856 7 N -0.447 5.447 8 C 0.076 3.924 9 C 0.230 3.770 10 H 0.077 0.923 11 C -0.146 4.146 12 N -0.571 5.571 13 C -0.231 4.231 14 H 0.101 0.899 15 C 0.047 3.953 16 N -0.867 5.867 17 Si 0.853 3.147 18 H -0.269 1.269 19 H -0.294 1.294 20 H -0.287 1.287 21 C 0.158 3.842 22 C -0.130 4.130 23 C 0.480 3.520 24 O -0.523 6.523 25 O -0.522 6.522 26 S 0.143 5.857 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.181 0.819 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.267 0.733 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.740 7.567 -4.640 10.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.268 6.268 3 C 0.398 3.602 4 O -0.410 6.410 5 C -0.458 4.458 6 C -0.019 4.019 7 N -0.159 5.159 8 C -0.199 4.199 9 C 0.119 3.881 10 H 0.095 0.905 11 C -0.206 4.206 12 N -0.289 5.289 13 C -0.361 4.361 14 H 0.118 0.882 15 C -0.157 4.157 16 N -0.505 5.505 17 Si 0.681 3.319 18 H -0.193 1.193 19 H -0.222 1.222 20 H -0.214 1.214 21 C 0.032 3.968 22 C -0.171 4.171 23 C 0.322 3.678 24 O -0.412 6.412 25 O -0.333 6.333 26 S 0.403 5.597 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.197 0.803 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -5.943 8.290 -4.624 11.200 hybrid contribution -1.145 -0.652 1.872 2.289 sum -7.088 7.638 -2.752 10.777 Atomic orbital electron populations 1.23251 0.76130 1.03610 1.02486 1.86589 1.23281 1.32241 1.84729 1.19490 0.86894 0.81452 0.72334 1.90854 1.66696 1.35780 1.47658 1.24572 0.94653 0.98317 1.28275 1.22855 0.86434 0.99997 0.92641 1.66136 1.17749 1.16012 1.16009 1.29600 1.00524 0.92027 0.97775 1.19621 0.81533 0.94381 0.92517 0.90470 1.22100 1.00454 1.03360 0.94695 1.44846 1.51913 1.08192 1.23997 1.18854 1.39676 0.82927 0.94612 0.88183 1.25305 0.97225 0.95526 0.97622 1.69923 1.31455 1.19177 1.29972 0.87229 0.81923 0.78055 0.84691 1.19340 1.22215 1.21439 1.20913 0.91016 0.94778 0.90123 1.22159 1.01433 0.99806 0.93653 1.24013 0.77866 0.75962 0.89928 1.90700 1.57686 1.59070 1.33715 1.84601 1.37516 1.64405 1.46780 1.83859 0.98907 1.09493 1.67404 0.91957 0.91930 0.87994 0.80254 0.93448 0.91468 0.91015 0.92263 0.92784 0.92131 0.86366 0.88080 0.74041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.57 101.05 1.07 1.47 16 2 O -0.35 -5.00 10.37 -40.98 -0.42 -5.43 16 3 C 0.55 9.23 7.92 34.06 0.27 9.50 16 4 O -0.52 -9.49 16.76 -19.35 -0.32 -9.81 16 5 C -0.34 -5.80 6.51 -36.79 -0.24 -6.04 16 6 C 0.14 2.55 11.20 -18.48 -0.21 2.34 16 7 N -0.45 -8.92 9.27 -11.26 -0.10 -9.03 16 8 C 0.08 1.39 6.19 -13.31 -0.08 1.31 16 9 C 0.23 3.93 3.24 -69.08 -0.22 3.70 16 10 H 0.08 1.11 7.83 -51.93 -0.41 0.71 16 11 C -0.15 -2.20 8.92 37.16 0.33 -1.86 16 12 N -0.57 -11.62 2.12 -166.98 -0.35 -11.98 16 13 C -0.23 -5.56 8.14 -15.06 -0.12 -5.68 16 14 H 0.10 2.61 6.88 -52.48 -0.36 2.25 16 15 C 0.05 1.24 5.19 -17.43 -0.09 1.15 16 16 N -0.87 -24.15 13.97 55.49 0.78 -23.38 16 17 Si 0.85 21.53 25.26 -169.99 -4.29 17.23 16 18 H -0.27 -6.74 6.45 56.52 0.36 -6.38 16 19 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 21 C 0.16 3.09 3.47 -4.04 -0.01 3.08 16 22 C -0.13 -2.08 6.13 -27.88 -0.17 -2.25 16 23 C 0.48 7.56 8.33 36.01 0.30 7.86 16 24 O -0.52 -9.95 16.74 -18.75 -0.31 -10.26 16 25 O -0.52 -6.41 13.42 -39.26 -0.53 -6.94 16 26 S 0.14 2.36 23.00 -107.50 -2.47 -0.12 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.18 2.77 8.06 -52.48 -0.42 2.35 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.25 7.07 -51.93 -0.37 0.88 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.05 1.00 7.92 -51.93 -0.41 0.59 16 36 H 0.06 1.38 3.29 -51.93 -0.17 1.21 16 37 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.40 3.13 9.10 45.56 0.41 3.55 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -32.51 352.84 -5.76 -38.27 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -3.86 Total: 1.56 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 0.82 Total: 14.56 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.32 Total: -44.38 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.59 Total: -32.44 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.29 Total: 17.23 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.47 Total: -0.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.51 -5.76 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599007582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.669 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds