Wall clock time and date at job start Tue Mar 31 2020 16:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34878 * 117.00150 * 2 1 4 4 O 1.21608 * 119.99596 * 0.02562 * 3 2 1 5 5 C 1.46500 * 119.99898 * 180.02562 * 3 2 1 6 6 C 1.36754 * 126.18280 * 0.02983 * 5 3 2 7 7 N 1.30911 * 113.93523 * 179.97438 * 6 5 3 8 8 C 1.29395 * 117.46674 * 0.02562 * 7 6 5 9 9 C 1.50698 * 124.70647 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46890 * 192.26331 * 9 8 7 11 11 C 1.52997 * 109.47715 * 72.26028 * 9 8 7 12 12 N 1.46504 * 109.46905 * 312.25899 * 9 8 7 13 13 C 1.36934 * 119.99867 * 65.12767 * 12 9 8 14 14 H 1.08003 * 119.99828 * 30.33576 * 13 12 9 15 15 C 1.38806 * 120.00247 * 210.05464 * 13 12 9 16 16 N 1.31617 * 120.00457 * 210.96590 * 15 13 12 17 17 Si 1.86803 * 119.99612 * 30.96626 * 15 13 12 18 18 H 1.48502 * 109.47302 * 358.69687 * 17 15 13 19 19 H 1.48499 * 109.46954 * 118.70054 * 17 15 13 20 20 H 1.48503 * 109.47104 * 238.69388 * 17 15 13 21 21 C 1.46504 * 119.99961 * 245.12803 * 12 9 8 22 22 C 1.52994 * 109.47048 * 269.99821 * 21 12 9 23 23 C 1.50702 * 109.47071 * 180.02562 * 22 21 12 24 24 O 1.20826 * 119.99993 * 0.02562 * 23 22 21 25 25 O 1.34231 * 120.00145 * 180.02562 * 23 22 21 26 26 S 1.70928 * 110.58625 * 0.23950 * 8 7 6 27 27 H 1.09001 * 109.47036 * 299.99778 * 1 2 3 28 28 H 1.08995 * 109.47465 * 59.99708 * 1 2 3 29 29 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.08003 * 123.03170 * 0.03677 * 6 5 3 31 31 H 1.09007 * 109.46732 * 65.98569 * 11 9 8 32 32 H 1.08991 * 109.47549 * 185.99061 * 11 9 8 33 33 H 1.09005 * 109.47044 * 305.99245 * 11 9 8 34 34 H 0.97000 * 120.00261 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.46778 * 30.00182 * 21 12 9 36 36 H 1.09004 * 109.46509 * 150.00248 * 21 12 9 37 37 H 1.08996 * 109.47686 * 300.00365 * 22 21 12 38 38 H 1.09003 * 109.47190 * 60.00252 * 22 21 12 39 39 H 0.96697 * 116.99636 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4020 2.2216 0.0005 5 6 3.5274 1.2784 -0.0006 6 6 4.3913 0.2183 -0.0017 7 7 5.6544 0.5625 -0.0025 8 6 5.9283 1.8272 -0.0017 9 6 7.3207 2.4035 -0.0018 10 1 7.2724 3.4701 0.2173 11 6 7.9595 2.1936 -1.3761 12 7 8.1276 1.7312 1.0196 13 6 8.4171 0.3985 0.8956 14 1 8.5093 -0.0452 -0.0847 15 6 8.5980 -0.3808 2.0299 16 7 9.4219 -1.4068 1.9990 17 14 7.6721 0.0265 3.6004 18 1 6.8396 1.2371 3.3843 19 1 6.7983 -1.1157 3.9702 20 1 8.6426 0.2820 4.6950 21 6 8.6246 2.4846 2.1735 22 6 9.9969 3.0754 1.8441 23 6 10.5085 3.8499 3.0314 24 8 9.8439 3.9216 4.0379 25 8 11.7025 4.4602 2.9707 26 16 4.4917 2.7533 0.0071 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0614 -0.8101 -0.0029 31 1 7.4210 2.7802 -2.1205 32 1 9.0010 2.5134 -1.3454 33 1 7.9115 1.1374 -1.6416 34 1 9.5485 -1.9512 2.7918 35 1 7.9290 3.2902 2.4083 36 1 8.7124 1.8184 3.0318 37 1 10.6925 2.2698 1.6092 38 1 9.9092 3.7415 0.9857 39 1 11.9880 4.9452 3.7570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599007582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:20 Heat of formation + Delta-G solvation = -121.009560 kcal Electronic energy + Delta-G solvation = -25855.408489 eV Core-core repulsion = 21890.678590 eV Total energy + Delta-G solvation = -3964.729899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52893 -41.21201 -40.58776 -38.39087 -37.55550 -37.03696 -34.33005 -33.60663 -31.59962 -30.52504 -28.42751 -27.11042 -26.54401 -24.97542 -23.66654 -22.61009 -21.98306 -20.62001 -19.46061 -19.06314 -18.62920 -18.02519 -17.67458 -17.51689 -17.51028 -17.16828 -16.64560 -16.11854 -15.74309 -15.48389 -15.00396 -14.89159 -14.66753 -14.43135 -14.28939 -14.23787 -13.78547 -13.40701 -13.18615 -13.06491 -12.90111 -12.67778 -12.53913 -12.49543 -12.40172 -12.09110 -12.01915 -11.89591 -11.77778 -11.61239 -11.42702 -10.62045 -10.51995 -10.39590 -9.89968 -9.02808 -8.18556 -5.37120 -0.90044 0.06021 0.63070 1.19883 1.25917 1.27499 1.37863 1.41460 1.80440 1.99062 2.18070 2.42062 3.01362 3.31752 3.33203 3.75739 3.94939 4.06379 4.12405 4.17911 4.25968 4.30204 4.35003 4.49406 4.60953 4.66630 4.70231 4.93477 4.99357 5.05864 5.12891 5.15732 5.19453 5.59066 5.66359 5.91023 6.26983 6.49242 6.81024 6.95542 7.06963 7.64201 7.96266 9.00394 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003906 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.346737 B = 7166.062976 C = 7739.996958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.557 3.443 4 O -0.535 6.535 5 C -0.339 4.339 6 C 0.135 3.865 7 N -0.481 5.481 8 C 0.068 3.932 9 C 0.224 3.776 10 H 0.115 0.885 11 C -0.137 4.137 12 N -0.586 5.586 13 C -0.194 4.194 14 H 0.077 0.923 15 C 0.003 3.997 16 N -0.924 5.924 17 Si 0.888 3.112 18 H -0.266 1.266 19 H -0.318 1.318 20 H -0.305 1.305 21 C 0.155 3.845 22 C -0.123 4.123 23 C 0.489 3.511 24 O -0.561 6.561 25 O -0.509 6.509 26 S 0.213 5.787 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.137 0.863 30 H 0.196 0.804 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.258 0.742 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 10.375 -6.347 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.270 6.270 3 C 0.402 3.598 4 O -0.428 6.428 5 C -0.461 4.461 6 C -0.027 4.027 7 N -0.194 5.194 8 C -0.208 4.208 9 C 0.114 3.886 10 H 0.133 0.867 11 C -0.197 4.197 12 N -0.306 5.306 13 C -0.325 4.325 14 H 0.094 0.906 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.720 3.280 18 H -0.191 1.191 19 H -0.248 1.248 20 H -0.234 1.234 21 C 0.029 3.971 22 C -0.163 4.163 23 C 0.333 3.667 24 O -0.453 6.453 25 O -0.322 6.322 26 S 0.473 5.527 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.155 0.845 30 H 0.213 0.787 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.124 0.876 38 H 0.156 0.844 39 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -7.789 11.135 -6.339 14.995 hybrid contribution -0.977 -1.256 2.117 2.649 sum -8.766 9.878 -4.222 13.865 Atomic orbital electron populations 1.23662 0.73577 1.06131 1.02919 1.86585 1.25714 1.30757 1.83910 1.19393 0.86564 0.81959 0.71893 1.90852 1.66968 1.36492 1.48453 1.24974 0.95610 0.98924 1.26634 1.23096 0.85840 1.01082 0.92721 1.66189 1.19171 1.17395 1.16599 1.29700 1.02346 0.92113 0.96635 1.19923 0.80703 0.95763 0.92216 0.86678 1.22016 1.01639 1.02083 0.93989 1.44609 1.54785 1.06797 1.24436 1.18505 1.37285 0.83922 0.92744 0.90592 1.25480 0.99153 0.96284 0.98442 1.69999 1.35091 1.21942 1.29862 0.86681 0.80882 0.76531 0.83878 1.19052 1.24784 1.23378 1.20887 0.93231 0.94224 0.88740 1.21966 0.99100 1.00123 0.95062 1.23837 0.78274 0.75520 0.89063 1.90699 1.59022 1.60618 1.34925 1.84529 1.35617 1.63975 1.48094 1.83613 0.96678 1.07481 1.64933 0.91780 0.91262 0.84545 0.78725 0.90333 0.90177 0.93916 0.93251 0.91562 0.95804 0.87644 0.84365 0.71445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.57 113.37 1.20 1.71 16 2 O -0.35 -9.09 10.37 -57.92 -0.60 -9.69 16 3 C 0.56 17.03 7.92 69.98 0.55 17.59 16 4 O -0.54 -18.01 16.76 19.48 0.33 -17.68 16 5 C -0.34 -10.80 6.51 24.08 0.16 -10.65 16 6 C 0.13 4.54 11.20 84.48 0.95 5.49 16 7 N -0.48 -18.59 9.27 -189.53 -1.76 -20.34 16 8 C 0.07 2.30 6.19 88.47 0.55 2.85 16 9 C 0.22 6.99 3.24 44.24 0.14 7.13 16 10 H 0.12 2.75 7.83 -2.39 -0.02 2.74 16 11 C -0.14 -3.73 8.92 71.98 0.64 -3.09 16 12 N -0.59 -23.26 2.12 -682.20 -1.45 -24.70 16 13 C -0.19 -9.56 8.14 84.03 0.68 -8.88 16 14 H 0.08 4.09 6.88 -2.91 -0.02 4.07 16 15 C 0.00 0.18 5.19 84.86 0.44 0.62 16 16 N -0.92 -54.73 13.97 21.65 0.30 -54.42 16 17 Si 0.89 46.63 25.26 68.60 1.73 48.36 16 18 H -0.27 -13.45 6.45 99.48 0.64 -12.81 16 19 H -0.32 -17.45 7.11 99.48 0.71 -16.74 16 20 H -0.31 -16.51 7.11 99.48 0.71 -15.81 16 21 C 0.15 5.91 3.47 86.38 0.30 6.21 16 22 C -0.12 -3.71 6.13 29.85 0.18 -3.53 16 23 C 0.49 14.62 8.33 71.24 0.59 15.22 16 24 O -0.56 -20.91 16.74 21.96 0.37 -20.54 16 25 O -0.51 -11.22 13.42 -51.43 -0.69 -11.91 16 26 S 0.21 6.21 23.00 -56.49 -1.30 4.91 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.20 5.76 8.06 -2.91 -0.02 5.73 16 31 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.04 1.42 7.07 -2.38 -0.02 1.41 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.07 2.32 7.92 -2.39 -0.02 2.30 16 36 H 0.02 1.10 3.29 -2.38 -0.01 1.10 16 37 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 38 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.42 5.48 9.10 -74.06 -0.67 4.80 16 Total: -1.00 -74.38 352.84 3.70 -70.68 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 0.37 Total: 4.65 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 6.39 Total: 30.68 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -2.90 Total: -99.47 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.60 Total: -59.82 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.73 Total: 48.36 kcal Atomic # 16 Polarization: 6.21 SS G_CDS: -1.30 Total: 4.91 kcal Total: -74.38 3.70 -70.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599007582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.325 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds