Wall clock time and date at job start Tue Mar 31 2020 14:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99936 * 2 1 4 4 H 1.48493 * 109.47499 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47129 * 300.00419 * 3 2 1 6 6 H 1.48508 * 109.47004 * 59.99951 * 3 2 1 7 7 C 1.37870 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00318 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47170 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47170 * 179.97438 * 10 9 7 12 12 O 1.20829 * 119.99862 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99834 * 180.02562 * 11 10 9 14 14 C 1.45206 * 116.99967 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.46857 * 29.99599 * 14 13 11 16 16 C 1.50701 * 109.47193 * 149.99559 * 14 13 11 17 17 C 1.38370 * 119.84819 * 220.00136 * 16 14 13 18 18 C 1.37942 * 120.14817 * 179.97438 * 17 16 14 19 19 C 1.39631 * 119.84854 * 0.02562 * 18 17 16 20 20 C 1.47725 * 120.14695 * 180.02562 * 19 18 17 21 21 O 1.21473 * 120.00289 * 0.02562 * 20 19 18 22 22 O 1.34710 * 119.99570 * 179.72537 * 20 19 18 23 23 C 1.39625 * 119.69957 * 0.28161 * 19 18 17 24 24 C 1.37944 * 119.84833 * 359.42001 * 23 19 18 25 25 C 1.52995 * 109.46956 * 269.99679 * 14 13 11 26 26 F 1.39906 * 109.47061 * 179.97438 * 25 14 13 27 27 F 1.39895 * 109.47462 * 299.99668 * 25 14 13 28 28 H 0.96997 * 120.00272 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47539 * 59.99869 * 9 7 2 30 30 H 1.08997 * 109.47391 * 299.99799 * 9 7 2 31 31 H 1.09000 * 109.46940 * 60.00103 * 10 9 7 32 32 H 1.08997 * 109.46961 * 300.00260 * 10 9 7 33 33 H 1.07999 * 119.92087 * 359.97438 * 17 16 14 34 34 H 1.07997 * 120.07485 * 180.02562 * 18 17 16 35 35 H 0.96708 * 116.99875 * 180.27167 * 22 20 19 36 36 H 1.08000 * 120.07665 * 179.70051 * 23 19 18 37 37 H 1.07998 * 119.92405 * 180.29614 * 24 23 19 38 38 H 1.09002 * 109.47472 * 60.00164 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4920 -4.9671 0.0012 12 8 0.2837 -4.9672 0.0020 13 8 2.1632 -6.1295 0.0018 14 6 1.3724 -7.3474 0.0030 15 1 0.4279 -7.1677 -0.5106 16 6 2.1305 -8.4393 -0.7070 17 6 1.4586 -9.3110 -1.5456 18 6 2.1465 -10.3124 -2.1990 19 6 3.5238 -10.4455 -2.0120 20 6 4.2671 -11.5152 -2.7089 21 8 3.6803 -12.2811 -3.4468 22 8 5.5968 -11.6374 -2.5306 23 6 4.1944 -9.5664 -1.1593 24 6 3.4953 -8.5657 -0.5170 25 6 1.0952 -7.7740 1.4458 26 9 0.3328 -8.9471 1.4470 27 9 2.3074 -8.0046 2.1050 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.8721 -3.6042 0.8905 32 1 2.8721 -3.6042 -0.8894 33 1 0.3932 -9.2071 -1.6889 34 1 1.6210 -10.9918 -2.8536 35 1 6.0404 -12.3500 -3.0108 36 1 5.2588 -9.6669 -1.0065 37 1 4.0135 -7.8821 0.1390 38 1 0.5469 -6.9843 1.9594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:08 Heat of formation + Delta-G solvation = -262.535772 kcal Electronic energy + Delta-G solvation = -27096.414316 eV Core-core repulsion = 22539.414242 eV Total energy + Delta-G solvation = -4557.000074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.19420 -47.17856 -40.86824 -40.43655 -39.09116 -36.65033 -36.44122 -33.73709 -33.08790 -31.43295 -31.24682 -29.37779 -26.20976 -25.36293 -23.51572 -22.94316 -22.12531 -21.01196 -20.05303 -18.55658 -18.17814 -17.92820 -17.71768 -17.47663 -17.01407 -16.39837 -15.99636 -15.96384 -15.55506 -15.29863 -14.97354 -14.55666 -14.30144 -14.09429 -13.80753 -13.60366 -13.52056 -13.42151 -13.07354 -12.69830 -12.64234 -12.36072 -12.15676 -11.94602 -11.79599 -11.47369 -11.33784 -11.04853 -11.03578 -10.69818 -10.64182 -10.20999 -10.18221 -9.73684 -9.38760 -9.35652 -9.25788 -8.46326 -6.09894 -4.15222 0.18018 0.99683 2.07847 2.43056 2.53626 2.60381 3.25850 3.26261 3.33743 3.36851 3.59076 3.86187 3.98401 4.35010 4.38573 4.48400 4.58295 4.64153 4.77568 4.88137 4.96752 5.06698 5.26121 5.34468 5.36166 5.64881 5.81156 5.89878 5.95265 5.99646 6.05419 6.10018 6.32957 6.40221 6.66964 7.48268 7.55635 7.60063 7.87558 7.95322 8.24015 8.91706 9.49720 11.01045 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.017249 B = 0.002502 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.900002 B =11186.615829 C =12008.627319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.102 4.102 11 C 0.456 3.544 12 O -0.498 6.498 13 O -0.339 6.339 14 C 0.076 3.924 15 H 0.125 0.875 16 C -0.063 4.063 17 C -0.105 4.105 18 C -0.056 4.056 19 C -0.123 4.123 20 C 0.529 3.471 21 O -0.514 6.514 22 O -0.511 6.511 23 C -0.063 4.063 24 C -0.091 4.091 25 C 0.256 3.744 26 F -0.193 7.193 27 F -0.192 7.192 28 H 0.262 0.738 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.415 0.585 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.784 -22.233 -1.329 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.139 4.139 11 C 0.299 3.701 12 O -0.383 6.383 13 O -0.258 6.258 14 C 0.019 3.981 15 H 0.143 0.857 16 C -0.063 4.063 17 C -0.123 4.123 18 C -0.074 4.074 19 C -0.124 4.124 20 C 0.374 3.626 21 O -0.404 6.404 22 O -0.322 6.322 23 C -0.081 4.081 24 C -0.109 4.109 25 C 0.202 3.798 26 F -0.174 7.174 27 F -0.173 7.173 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.274 0.726 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.901 -22.061 -1.296 23.151 hybrid contribution 0.546 0.289 -0.268 0.673 sum 7.447 -21.772 -1.565 23.063 Atomic orbital electron populations 1.69991 1.06109 1.26794 1.49809 1.25017 0.94867 0.99409 0.95000 0.86479 0.80031 0.83464 0.77679 1.19609 1.20926 1.20925 1.21156 0.93135 0.90494 1.51982 0.92175 1.19053 0.93187 0.89227 0.98999 1.21858 1.00817 0.86766 1.04457 1.25174 0.88252 0.85521 0.71121 1.90663 1.15669 1.87093 1.44906 1.86803 1.40640 1.13589 1.84722 1.22363 0.97668 0.83635 0.94416 0.85704 1.19707 0.94688 0.94960 0.96929 1.20958 1.00722 0.94722 0.95889 1.21184 0.92093 0.96836 0.97320 1.19120 0.93827 0.97345 1.02073 1.20895 0.80261 0.82936 0.78540 1.90896 1.69647 1.43405 1.36412 1.84564 1.22400 1.56425 1.68860 1.21492 1.00763 0.92557 0.93327 1.21143 0.93223 0.97562 0.98987 1.22174 0.78789 0.85621 0.93250 1.93006 1.75662 1.51596 1.97182 1.93003 1.46546 1.95422 1.82373 0.92813 0.95489 0.95492 0.88478 0.88505 0.84319 0.83964 0.72610 0.83902 0.83814 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.12 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.80 4.26 -27.88 -0.12 0.68 16 10 C -0.10 -1.87 5.75 -27.88 -0.16 -2.03 16 11 C 0.46 7.79 7.93 36.01 0.29 8.08 16 12 O -0.50 -9.80 15.20 -18.75 -0.29 -10.09 16 13 O -0.34 -4.77 9.15 -39.25 -0.36 -5.13 16 14 C 0.08 0.92 2.40 -27.88 -0.07 0.85 16 15 H 0.13 1.49 7.01 -51.93 -0.36 1.13 16 16 C -0.06 -0.69 4.66 -104.53 -0.49 -1.18 16 17 C -0.10 -1.02 9.65 -39.64 -0.38 -1.40 16 18 C -0.06 -0.54 9.60 -39.17 -0.38 -0.92 16 19 C -0.12 -1.21 5.87 -104.98 -0.62 -1.83 16 20 C 0.53 5.13 8.27 34.61 0.29 5.42 16 21 O -0.51 -6.30 17.13 -19.25 -0.33 -6.63 16 22 O -0.51 -3.42 12.68 -40.52 -0.51 -3.93 16 23 C -0.06 -0.58 9.62 -39.17 -0.38 -0.96 16 24 C -0.09 -0.94 8.57 -39.64 -0.34 -1.28 16 25 C 0.26 2.97 5.12 37.15 0.19 3.16 16 26 F -0.19 -2.27 17.05 2.25 0.04 -2.23 16 27 F -0.19 -2.38 16.22 2.25 0.04 -2.35 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 30 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.14 1.09 8.03 -52.49 -0.42 0.67 16 34 H 0.14 1.23 7.65 -52.49 -0.40 0.83 16 35 H 0.42 0.91 9.11 45.56 0.42 1.33 16 36 H 0.14 1.05 7.61 -52.49 -0.40 0.65 16 37 H 0.14 1.43 7.63 -52.49 -0.40 1.03 16 38 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -33.17 351.56 -6.20 -39.36 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -3.22 Total: -0.41 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.57 Total: -4.30 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.74 Total: -25.36 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.49 Total: -25.78 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.07 Total: -4.58 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.17 -6.20 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.173 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds