Wall clock time and date at job start Tue Mar 31 2020 14:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99936 * 2 1 4 4 H 1.48493 * 109.47499 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47129 * 300.00419 * 3 2 1 6 6 H 1.48508 * 109.47004 * 59.99951 * 3 2 1 7 7 C 1.37870 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00318 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47170 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47170 * 179.97438 * 10 9 7 12 12 O 1.20829 * 119.99862 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99834 * 180.02562 * 11 10 9 14 14 C 1.45206 * 116.99967 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.46857 * 29.99599 * 14 13 11 16 16 C 1.50701 * 109.47193 * 149.99559 * 14 13 11 17 17 C 1.38370 * 119.84819 * 220.00136 * 16 14 13 18 18 C 1.37942 * 120.14817 * 179.97438 * 17 16 14 19 19 C 1.39631 * 119.84854 * 0.02562 * 18 17 16 20 20 C 1.47725 * 120.14695 * 180.02562 * 19 18 17 21 21 O 1.21473 * 120.00289 * 0.02562 * 20 19 18 22 22 O 1.34710 * 119.99570 * 179.72537 * 20 19 18 23 23 C 1.39625 * 119.69957 * 0.28161 * 19 18 17 24 24 C 1.37944 * 119.84833 * 359.42001 * 23 19 18 25 25 C 1.52995 * 109.46956 * 269.99679 * 14 13 11 26 26 F 1.39906 * 109.47061 * 179.97438 * 25 14 13 27 27 F 1.39895 * 109.47462 * 299.99668 * 25 14 13 28 28 H 0.96997 * 120.00272 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47539 * 59.99869 * 9 7 2 30 30 H 1.08997 * 109.47391 * 299.99799 * 9 7 2 31 31 H 1.09000 * 109.46940 * 60.00103 * 10 9 7 32 32 H 1.08997 * 109.46961 * 300.00260 * 10 9 7 33 33 H 1.07999 * 119.92087 * 359.97438 * 17 16 14 34 34 H 1.07997 * 120.07485 * 180.02562 * 18 17 16 35 35 H 0.96708 * 116.99875 * 180.27167 * 22 20 19 36 36 H 1.08000 * 120.07665 * 179.70051 * 23 19 18 37 37 H 1.07998 * 119.92405 * 180.29614 * 24 23 19 38 38 H 1.09002 * 109.47472 * 60.00164 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4920 -4.9671 0.0012 12 8 0.2837 -4.9672 0.0020 13 8 2.1632 -6.1295 0.0018 14 6 1.3724 -7.3474 0.0030 15 1 0.4279 -7.1677 -0.5106 16 6 2.1305 -8.4393 -0.7070 17 6 1.4586 -9.3110 -1.5456 18 6 2.1465 -10.3124 -2.1990 19 6 3.5238 -10.4455 -2.0120 20 6 4.2671 -11.5152 -2.7089 21 8 3.6803 -12.2811 -3.4468 22 8 5.5968 -11.6374 -2.5306 23 6 4.1944 -9.5664 -1.1593 24 6 3.4953 -8.5657 -0.5170 25 6 1.0952 -7.7740 1.4458 26 9 0.3328 -8.9471 1.4470 27 9 2.3074 -8.0046 2.1050 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.8721 -3.6042 0.8905 32 1 2.8721 -3.6042 -0.8894 33 1 0.3932 -9.2071 -1.6889 34 1 1.6210 -10.9918 -2.8536 35 1 6.0404 -12.3500 -3.0108 36 1 5.2588 -9.6669 -1.0065 37 1 4.0135 -7.8821 0.1390 38 1 0.5469 -6.9843 1.9594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:07 Heat of formation + Delta-G solvation = -281.609915 kcal Electronic energy + Delta-G solvation = -27097.241433 eV Core-core repulsion = 22539.414242 eV Total energy + Delta-G solvation = -4557.827191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.14857 -48.13604 -41.87967 -41.43028 -39.92304 -37.88845 -37.14614 -35.65322 -34.05913 -33.05221 -32.16596 -30.32082 -28.02157 -26.22318 -24.77117 -23.83556 -23.35005 -21.93607 -21.43916 -19.39117 -19.16127 -19.08232 -18.57435 -18.49135 -18.38066 -17.76577 -17.21707 -16.81892 -16.71343 -16.47209 -16.16308 -15.78352 -15.38167 -15.02843 -14.83543 -14.58458 -14.47066 -14.40423 -14.23579 -14.09798 -13.79881 -13.63651 -13.26581 -13.19189 -12.86804 -12.81069 -12.63394 -12.47056 -12.21448 -11.99925 -11.88056 -11.76971 -11.65263 -11.48068 -11.25863 -10.57174 -10.17841 -10.11224 -8.19253 -6.31967 -0.60072 0.25550 1.07627 1.21208 1.43549 1.45106 1.47240 1.58903 1.98256 2.40229 2.43959 2.69387 2.96956 3.04733 3.15522 3.45583 3.64485 3.69825 3.85622 3.92060 3.97369 4.18509 4.23027 4.37181 4.46392 4.48288 4.63265 4.84387 4.93858 5.05024 5.16645 5.17606 5.33336 5.49508 5.51304 5.57555 5.65722 5.82342 6.14221 6.63659 6.86818 6.90685 7.38451 8.93261 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.017249 B = 0.002502 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.900002 B =11186.615829 C =12008.627319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.037 3.963 10 C -0.093 4.093 11 C 0.467 3.533 12 O -0.530 6.530 13 O -0.327 6.327 14 C 0.075 3.925 15 H 0.126 0.874 16 C -0.077 4.077 17 C -0.106 4.106 18 C -0.060 4.060 19 C -0.132 4.132 20 C 0.536 3.464 21 O -0.545 6.545 22 O -0.501 6.501 23 C -0.056 4.056 24 C -0.099 4.099 25 C 0.258 3.742 26 F -0.193 7.193 27 F -0.195 7.195 28 H 0.263 0.737 29 H -0.008 1.008 30 H -0.006 1.006 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.435 0.565 36 H 0.163 0.837 37 H 0.147 0.853 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.077 -22.730 -1.373 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.794 3.206 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.095 0.905 9 C 0.000 4.000 10 C -0.131 4.131 11 C 0.312 3.688 12 O -0.418 6.418 13 O -0.244 6.244 14 C 0.019 3.981 15 H 0.143 0.857 16 C -0.078 4.078 17 C -0.124 4.124 18 C -0.078 4.078 19 C -0.133 4.133 20 C 0.381 3.619 21 O -0.437 6.437 22 O -0.315 6.315 23 C -0.074 4.074 24 C -0.117 4.117 25 C 0.204 3.796 26 F -0.174 7.174 27 F -0.177 7.177 28 H 0.072 0.928 29 H 0.011 0.989 30 H 0.013 0.987 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.171 0.829 34 H 0.167 0.833 35 H 0.298 0.702 36 H 0.181 0.819 37 H 0.165 0.835 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.255 -22.592 -1.338 24.451 hybrid contribution -0.124 0.315 -0.263 0.429 sum 9.130 -22.277 -1.600 24.129 Atomic orbital electron populations 1.70144 1.08106 1.27805 1.51416 1.26034 0.95684 1.03682 0.94682 0.85330 0.79403 0.78428 0.77453 1.17697 1.20827 1.20780 1.21667 0.94131 0.91289 1.50777 0.90451 1.18826 0.93701 0.91732 0.95775 1.21572 0.99421 0.85402 1.06663 1.24727 0.87463 0.86147 0.70424 1.90663 1.16972 1.87676 1.46471 1.86742 1.40170 1.13440 1.84086 1.22521 0.97710 0.82852 0.95060 0.85653 1.19728 0.95136 0.95089 0.97803 1.21123 1.01544 0.94380 0.95364 1.21327 0.92330 0.96837 0.97294 1.19309 0.94114 0.97624 1.02230 1.20827 0.80951 0.82294 0.77789 1.90889 1.70467 1.44544 1.37827 1.84517 1.20904 1.57293 1.68829 1.21655 1.01638 0.91689 0.92452 1.21251 0.93057 0.98071 0.99320 1.22178 0.78707 0.85758 0.92985 1.93005 1.75629 1.51620 1.97156 1.92995 1.46800 1.95459 1.82405 0.92811 0.98938 0.98741 0.86122 0.86367 0.82895 0.83292 0.70237 0.81921 0.83527 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.29 21.44 0.28 -55.91 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 4 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.54 -28.69 9.11 25.60 0.23 -28.45 16 8 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.04 1.86 4.26 29.85 0.13 1.98 16 10 C -0.09 -3.34 5.75 29.85 0.17 -3.17 16 11 C 0.47 15.72 7.93 71.24 0.56 16.28 16 12 O -0.53 -21.16 15.20 21.96 0.33 -20.83 16 13 O -0.33 -8.76 9.15 -51.38 -0.47 -9.23 16 14 C 0.07 1.74 2.40 29.85 0.07 1.81 16 15 H 0.13 2.94 7.01 -2.39 -0.02 2.92 16 16 C -0.08 -1.60 4.66 -19.80 -0.09 -1.69 16 17 C -0.11 -1.94 9.65 22.23 0.21 -1.73 16 18 C -0.06 -1.08 9.60 22.54 0.22 -0.87 16 19 C -0.13 -2.39 5.87 -20.10 -0.12 -2.51 16 20 C 0.54 9.51 8.27 70.33 0.58 10.09 16 21 O -0.55 -12.79 17.13 19.92 0.34 -12.45 16 22 O -0.50 -5.50 12.68 -56.19 -0.71 -6.21 16 23 C -0.06 -0.93 9.62 22.53 0.22 -0.71 16 24 C -0.10 -1.88 8.57 22.23 0.19 -1.69 16 25 C 0.26 5.75 5.12 71.98 0.37 6.11 16 26 F -0.19 -4.35 17.05 44.97 0.77 -3.59 16 27 F -0.20 -4.59 16.22 44.97 0.73 -3.86 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H -0.01 -0.44 8.10 -2.39 -0.02 -0.46 16 30 H -0.01 -0.33 8.10 -2.39 -0.02 -0.35 16 31 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 32 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 33 H 0.15 2.24 8.03 -2.91 -0.02 2.22 16 34 H 0.15 2.45 7.65 -2.91 -0.02 2.43 16 35 H 0.44 0.83 9.11 -74.05 -0.67 0.16 16 36 H 0.16 1.94 7.61 -2.91 -0.02 1.92 16 37 H 0.15 2.65 7.63 -2.91 -0.02 2.63 16 38 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -71.92 351.56 6.96 -64.96 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.45 Total: 6.96 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 3.21 Total: -4.23 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.28 Total: -55.91 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -0.51 Total: -48.71 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 1.50 Total: -7.45 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -71.92 6.96 -64.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.647 kcal (2) G-P(sol) polarization free energy of solvation -71.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds