Wall clock time and date at job start Tue Mar 31 2020 14:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00130 * 2 1 4 4 H 1.48509 * 109.46966 * 269.99877 * 3 2 1 5 5 H 1.48500 * 109.47507 * 29.99511 * 3 2 1 6 6 H 1.48500 * 109.47424 * 149.99767 * 3 2 1 7 7 C 1.38709 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00076 * 180.02562 * 7 2 1 9 9 O 1.34816 * 119.99486 * 0.02562 * 7 2 1 10 10 C 1.35516 * 116.99457 * 174.95022 * 9 7 2 11 11 C 1.38834 * 120.16461 * 5.56485 * 10 9 7 12 12 C 1.38025 * 120.07392 * 180.02562 * 11 10 9 13 13 C 1.38582 * 120.40436 * 359.97438 * 12 11 10 14 14 C 1.37817 * 120.33021 * 0.02955 * 13 12 11 15 15 C 1.39693 * 119.91370 * 359.97308 * 14 13 12 16 16 C 1.47486 * 120.19456 * 180.02562 * 15 14 13 17 17 O 1.21583 * 119.99591 * 179.97438 * 16 15 14 18 18 N 1.34775 * 120.00196 * 359.97438 * 16 15 14 19 19 C 1.38839 * 119.99997 * 174.83195 * 18 16 15 20 20 C 1.39307 * 119.52767 * 185.11178 * 19 18 16 21 21 C 1.36908 * 119.38523 * 179.97438 * 20 19 18 22 22 C 1.40344 * 118.48325 * 359.97438 * 21 20 19 23 23 C 1.47462 * 120.48933 * 179.97438 * 22 21 20 24 24 O 1.21513 * 119.99802 * 359.97438 * 23 22 21 25 25 O 1.34742 * 119.99996 * 180.02562 * 23 22 21 26 26 C 1.39625 * 119.02417 * 0.02562 * 22 21 20 27 27 N 1.31656 * 120.50578 * 359.73948 * 26 22 21 28 28 H 0.96997 * 119.99890 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.96066 * 0.30349 * 11 10 9 30 30 H 1.07995 * 119.79944 * 179.97438 * 12 11 10 31 31 H 1.08005 * 119.83043 * 180.02562 * 13 12 11 32 32 H 1.07998 * 120.03994 * 179.97438 * 14 13 12 33 33 H 0.96998 * 119.99744 * 354.83213 * 18 16 15 34 34 H 1.08002 * 120.30422 * 359.94973 * 20 19 18 35 35 H 1.08003 * 120.75615 * 180.02562 * 21 20 19 36 36 H 0.96705 * 117.00098 * 179.97438 * 25 23 22 37 37 H 1.07996 * 119.74461 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0087 -1.2012 0.0005 8 1 3.0886 -1.2012 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0686 -3.5029 -0.1052 11 6 3.4555 -3.4402 -0.0912 12 6 4.2013 -4.5965 -0.1996 13 6 3.5746 -5.8264 -0.3224 14 6 2.1990 -5.9080 -0.3382 15 6 1.4309 -4.7463 -0.2295 16 6 -0.0417 -4.8265 -0.2453 17 8 -0.7067 -3.8131 -0.1499 18 7 -0.6502 -6.0231 -0.3653 19 6 -2.0327 -6.1113 -0.2725 20 6 -2.6436 -7.3631 -0.2907 21 6 -4.0070 -7.4467 -0.1984 22 6 -4.7444 -6.2578 -0.0875 23 6 -6.2151 -6.2963 0.0139 24 8 -6.7972 -7.3628 0.0014 25 8 -6.9134 -5.1488 0.1195 26 6 -4.0653 -5.0379 -0.0758 27 7 -2.7520 -5.0033 -0.1622 28 1 -0.4850 0.8400 -0.0004 29 1 3.9512 -2.4860 0.0091 30 1 5.2799 -4.5425 -0.1886 31 1 4.1673 -6.7254 -0.4061 32 1 1.7154 -6.8689 -0.4346 33 1 -0.1223 -6.8226 -0.5165 34 1 -2.0471 -8.2593 -0.3771 35 1 -4.5036 -8.4057 -0.2099 36 1 -7.8754 -5.2245 0.1830 37 1 -4.6212 -4.1160 0.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:40 Heat of formation + Delta-G solvation = -62.925021 kcal Electronic energy + Delta-G solvation = -26358.929814 eV Core-core repulsion = 22261.274698 eV Total energy + Delta-G solvation = -4097.655116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.96004 -40.03766 -39.27892 -37.96466 -36.44834 -36.18778 -34.59742 -32.60384 -32.41792 -31.22648 -29.90078 -29.02223 -25.61444 -25.06002 -23.97983 -23.07263 -21.84598 -21.26330 -20.10688 -18.63186 -18.25679 -17.97408 -17.45742 -17.07379 -16.41464 -15.76581 -15.58579 -14.98856 -14.79664 -14.67768 -14.43835 -14.26642 -13.95732 -13.85012 -13.68098 -13.14327 -13.07360 -12.90892 -12.71910 -12.61397 -11.78114 -11.71645 -11.43849 -11.22828 -10.97518 -10.90391 -10.87599 -10.59464 -10.50749 -10.01324 -9.84895 -9.49039 -8.94357 -8.67225 -8.41600 -8.26932 -7.41243 -6.50901 -4.11160 0.51400 1.25008 1.59254 2.22121 2.47726 2.89610 3.06119 3.08365 3.09567 3.14292 3.50815 3.87877 3.94965 4.40919 4.54196 4.71956 4.78143 4.86362 4.96792 5.07991 5.15806 5.30604 5.39611 5.53435 5.61702 5.76833 5.95035 5.97944 6.01142 6.21508 6.33413 6.45225 6.54781 6.74873 6.81733 6.95507 7.11508 7.19828 7.43232 7.58626 7.77342 7.86214 8.14115 8.82220 8.88690 9.57141 10.62005 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003404 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.259955 B = 8222.796511 C =10472.814348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.046 3.954 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.405 4.405 8 H 0.095 0.905 9 O -0.121 6.121 10 C 0.189 3.811 11 C -0.234 4.234 12 C -0.049 4.049 13 C -0.229 4.229 14 C -0.039 4.039 15 C -0.231 4.231 16 C 0.536 3.464 17 O -0.421 6.421 18 N -0.661 5.661 19 C 0.415 3.585 20 C -0.233 4.233 21 C 0.019 3.981 22 C -0.243 4.243 23 C 0.541 3.459 24 O -0.527 6.527 25 O -0.511 6.511 26 C 0.208 3.792 27 N -0.480 5.480 28 H 0.273 0.727 29 H 0.133 0.867 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.413 0.587 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.413 0.587 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 -13.070 -0.713 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.480 4.480 8 H 0.113 0.887 9 O -0.018 6.018 10 C 0.129 3.871 11 C -0.253 4.253 12 C -0.067 4.067 13 C -0.248 4.248 14 C -0.057 4.057 15 C -0.237 4.237 16 C 0.325 3.675 17 O -0.286 6.286 18 N -0.307 5.307 19 C 0.181 3.819 20 C -0.257 4.257 21 C -0.007 4.007 22 C -0.248 4.248 23 C 0.387 3.613 24 O -0.418 6.418 25 O -0.322 6.322 26 C 0.046 3.954 27 N -0.194 5.194 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.251 0.749 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.272 0.728 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.571 -11.409 -0.613 11.970 hybrid contribution -0.170 -0.607 -0.051 0.632 sum -3.741 -12.015 -0.664 12.602 Atomic orbital electron populations 1.70125 1.05966 1.27963 1.41582 1.25412 0.95830 0.99017 0.96035 0.85715 0.79004 0.79862 0.78869 1.19676 1.20050 1.19024 1.21516 0.91943 0.80955 1.53583 0.88730 1.84151 1.33738 1.11108 1.72849 1.19208 0.89897 0.87219 0.90793 1.21169 0.93274 0.99451 1.11429 1.20926 0.98763 0.92267 0.94762 1.20459 0.93957 0.97224 1.13191 1.20739 0.94027 0.95242 0.95742 1.18653 0.90792 0.92493 1.21716 1.18569 0.88231 0.82425 0.78235 1.91076 1.64844 1.32283 1.40418 1.43952 1.03430 1.12554 1.70754 1.18943 0.85546 0.89556 0.87818 1.21153 0.95421 0.97137 1.11976 1.21060 0.92675 0.97914 0.89011 1.19887 0.90254 0.96340 1.18367 1.20547 0.88175 0.81010 0.71609 1.90869 1.71590 1.31381 1.47920 1.84591 1.26391 1.35902 1.85326 1.23273 0.89015 0.96992 0.86071 1.68099 1.06746 1.28326 1.16256 0.91671 0.84917 0.87029 0.87104 0.87119 0.74942 0.83862 0.83507 0.72829 0.81007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.37 13.67 55.48 0.76 -23.61 16 2 C 0.05 1.25 5.49 -17.51 -0.10 1.15 16 3 Si 0.94 20.04 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.40 -11.12 9.49 30.91 0.29 -10.82 16 8 H 0.10 2.35 5.21 -52.49 -0.27 2.07 16 9 O -0.12 -3.45 7.84 -21.05 -0.16 -3.62 16 10 C 0.19 4.50 6.66 -38.59 -0.26 4.24 16 11 C -0.23 -4.79 9.16 -39.44 -0.36 -5.15 16 12 C -0.05 -0.81 10.03 -39.53 -0.40 -1.20 16 13 C -0.23 -3.48 10.02 -39.61 -0.40 -3.88 16 14 C -0.04 -0.61 9.53 -39.19 -0.37 -0.98 16 15 C -0.23 -4.75 5.89 -104.81 -0.62 -5.37 16 16 C 0.54 11.36 7.72 -12.49 -0.10 11.26 16 17 O -0.42 -11.18 13.40 -16.56 -0.22 -11.40 16 18 N -0.66 -10.31 5.31 -12.41 -0.07 -10.38 16 19 C 0.41 6.50 7.41 -154.98 -1.15 5.35 16 20 C -0.23 -2.65 9.86 -39.67 -0.39 -3.04 16 21 C 0.02 0.21 9.65 -39.27 -0.38 -0.16 16 22 C -0.24 -3.15 5.89 -104.83 -0.62 -3.77 16 23 C 0.54 6.60 8.27 34.49 0.29 6.89 16 24 O -0.53 -7.44 17.20 -19.28 -0.33 -7.77 16 25 O -0.51 -4.86 12.70 -40.61 -0.52 -5.37 16 26 C 0.21 3.14 10.79 -17.11 -0.18 2.96 16 27 N -0.48 -8.93 7.84 -12.07 -0.09 -9.02 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 30 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.11 1.24 6.42 -52.49 -0.34 0.91 16 33 H 0.41 4.55 6.74 -40.82 -0.27 4.27 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.15 1.39 7.73 -52.48 -0.41 0.98 16 36 H 0.41 1.93 9.11 45.56 0.42 2.34 16 37 H 0.17 2.37 7.61 -52.49 -0.40 1.97 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -37.29 335.63 -7.31 -44.60 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -1.97 Total: 9.04 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -4.74 Total: -2.53 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.60 Total: -43.02 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -1.23 Total: -28.17 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.29 -7.31 -44.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.322 kcal (2) G-P(sol) polarization free energy of solvation -37.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds