Wall clock time and date at job start Tue Mar 31 2020 14:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00130 * 2 1 4 4 H 1.48509 * 109.46966 * 269.99877 * 3 2 1 5 5 H 1.48500 * 109.47507 * 29.99511 * 3 2 1 6 6 H 1.48500 * 109.47424 * 149.99767 * 3 2 1 7 7 C 1.38709 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00076 * 180.02562 * 7 2 1 9 9 O 1.34816 * 119.99486 * 0.02562 * 7 2 1 10 10 C 1.35516 * 116.99457 * 174.95022 * 9 7 2 11 11 C 1.38834 * 120.16461 * 5.56485 * 10 9 7 12 12 C 1.38025 * 120.07392 * 180.02562 * 11 10 9 13 13 C 1.38582 * 120.40436 * 359.97438 * 12 11 10 14 14 C 1.37817 * 120.33021 * 0.02955 * 13 12 11 15 15 C 1.39693 * 119.91370 * 359.97308 * 14 13 12 16 16 C 1.47486 * 120.19456 * 180.02562 * 15 14 13 17 17 O 1.21583 * 119.99591 * 179.97438 * 16 15 14 18 18 N 1.34775 * 120.00196 * 359.97438 * 16 15 14 19 19 C 1.38839 * 119.99997 * 174.83195 * 18 16 15 20 20 C 1.39307 * 119.52767 * 185.11178 * 19 18 16 21 21 C 1.36908 * 119.38523 * 179.97438 * 20 19 18 22 22 C 1.40344 * 118.48325 * 359.97438 * 21 20 19 23 23 C 1.47462 * 120.48933 * 179.97438 * 22 21 20 24 24 O 1.21513 * 119.99802 * 359.97438 * 23 22 21 25 25 O 1.34742 * 119.99996 * 180.02562 * 23 22 21 26 26 C 1.39625 * 119.02417 * 0.02562 * 22 21 20 27 27 N 1.31656 * 120.50578 * 359.73948 * 26 22 21 28 28 H 0.96997 * 119.99890 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.96066 * 0.30349 * 11 10 9 30 30 H 1.07995 * 119.79944 * 179.97438 * 12 11 10 31 31 H 1.08005 * 119.83043 * 180.02562 * 13 12 11 32 32 H 1.07998 * 120.03994 * 179.97438 * 14 13 12 33 33 H 0.96998 * 119.99744 * 354.83213 * 18 16 15 34 34 H 1.08002 * 120.30422 * 359.94973 * 20 19 18 35 35 H 1.08003 * 120.75615 * 180.02562 * 21 20 19 36 36 H 0.96705 * 117.00098 * 179.97438 * 25 23 22 37 37 H 1.07996 * 119.74461 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0087 -1.2012 0.0005 8 1 3.0886 -1.2012 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0686 -3.5029 -0.1052 11 6 3.4555 -3.4402 -0.0912 12 6 4.2013 -4.5965 -0.1996 13 6 3.5746 -5.8264 -0.3224 14 6 2.1990 -5.9080 -0.3382 15 6 1.4309 -4.7463 -0.2295 16 6 -0.0417 -4.8265 -0.2453 17 8 -0.7067 -3.8131 -0.1499 18 7 -0.6502 -6.0231 -0.3653 19 6 -2.0327 -6.1113 -0.2725 20 6 -2.6436 -7.3631 -0.2907 21 6 -4.0070 -7.4467 -0.1984 22 6 -4.7444 -6.2578 -0.0875 23 6 -6.2151 -6.2963 0.0139 24 8 -6.7972 -7.3628 0.0014 25 8 -6.9134 -5.1488 0.1195 26 6 -4.0653 -5.0379 -0.0758 27 7 -2.7520 -5.0033 -0.1622 28 1 -0.4850 0.8400 -0.0004 29 1 3.9512 -2.4860 0.0091 30 1 5.2799 -4.5425 -0.1886 31 1 4.1673 -6.7254 -0.4061 32 1 1.7154 -6.8689 -0.4346 33 1 -0.1223 -6.8226 -0.5165 34 1 -2.0471 -8.2593 -0.3771 35 1 -4.5036 -8.4057 -0.2099 36 1 -7.8754 -5.2245 0.1830 37 1 -4.6212 -4.1160 0.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:39 Heat of formation + Delta-G solvation = -90.544574 kcal Electronic energy + Delta-G solvation = -26360.127488 eV Core-core repulsion = 22261.274698 eV Total energy + Delta-G solvation = -4098.852789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.13863 -41.28788 -40.62081 -39.46889 -38.03583 -37.11351 -36.02727 -34.32717 -33.69147 -32.59192 -31.14821 -30.57114 -27.44451 -26.34366 -25.13222 -24.38486 -23.23655 -22.49309 -21.51023 -19.99669 -19.75537 -19.18525 -18.68981 -18.25196 -17.94464 -16.83750 -16.76155 -16.42255 -16.35402 -16.18371 -15.79701 -15.57798 -15.48072 -15.31872 -14.81367 -14.56848 -14.40786 -14.25519 -14.08157 -13.75813 -13.54847 -13.01895 -12.69248 -12.62687 -12.53721 -12.35684 -12.12579 -11.91979 -11.88631 -11.48658 -11.08282 -11.01344 -10.82921 -10.05504 -9.87941 -9.45876 -9.04110 -8.44062 -6.15461 -0.59889 0.13030 0.25057 0.73011 1.32686 1.42771 1.44125 1.51413 1.79092 2.06771 2.08213 2.15689 2.77477 2.90981 3.22070 3.27725 3.44772 3.72477 3.79586 3.81682 4.01496 4.07691 4.28823 4.30452 4.51269 4.56304 4.64718 4.78346 4.95635 5.01428 5.07313 5.10947 5.14295 5.46153 5.53236 5.58730 5.63786 5.70219 5.94299 6.15014 6.21663 6.91855 6.94888 7.00674 7.39912 7.78699 8.75651 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003404 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.259955 B = 8222.796511 C =10472.814348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.020 4.020 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.428 4.428 8 H 0.108 0.892 9 O -0.188 6.188 10 C 0.151 3.849 11 C -0.258 4.258 12 C -0.038 4.038 13 C -0.199 4.199 14 C -0.028 4.028 15 C -0.246 4.246 16 C 0.535 3.465 17 O -0.491 6.491 18 N -0.642 5.642 19 C 0.382 3.618 20 C -0.199 4.199 21 C 0.020 3.980 22 C -0.234 4.234 23 C 0.549 3.451 24 O -0.543 6.543 25 O -0.508 6.508 26 C 0.187 3.813 27 N -0.539 5.539 28 H 0.271 0.729 29 H 0.123 0.877 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.436 0.564 34 H 0.195 0.805 35 H 0.178 0.822 36 H 0.435 0.565 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 -17.957 -1.093 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.503 4.503 8 H 0.125 0.875 9 O -0.090 6.090 10 C 0.095 3.905 11 C -0.277 4.277 12 C -0.056 4.056 13 C -0.217 4.217 14 C -0.046 4.046 15 C -0.251 4.251 16 C 0.325 3.675 17 O -0.361 6.361 18 N -0.291 5.291 19 C 0.150 3.850 20 C -0.222 4.222 21 C -0.005 4.005 22 C -0.240 4.240 23 C 0.394 3.606 24 O -0.435 6.435 25 O -0.322 6.322 26 C 0.027 3.973 27 N -0.254 5.254 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.171 0.829 31 H 0.184 0.816 32 H 0.185 0.815 33 H 0.278 0.722 34 H 0.212 0.788 35 H 0.195 0.805 36 H 0.297 0.703 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.390 -16.409 -0.999 16.498 hybrid contribution -0.792 0.358 0.037 0.870 sum -2.182 -16.051 -0.963 16.227 Atomic orbital electron populations 1.70325 1.08310 1.28572 1.46454 1.26734 0.96701 1.03062 0.95513 0.84585 0.77936 0.74317 0.79285 1.18749 1.19824 1.17053 1.22019 0.92676 0.81718 1.53930 0.87517 1.84166 1.35251 1.12239 1.77358 1.20067 0.91693 0.87480 0.91219 1.21301 0.92265 1.01055 1.13081 1.21469 1.00771 0.91327 0.92026 1.21201 0.93981 0.98428 1.08114 1.21360 0.94498 0.95545 0.93212 1.19147 0.91263 0.93201 1.21456 1.18850 0.88620 0.83104 0.76968 1.91064 1.66247 1.35136 1.43666 1.43460 1.03862 1.11513 1.70265 1.19282 0.85275 0.90582 0.89841 1.21542 0.95600 0.96701 1.08316 1.21477 0.92739 0.98347 0.87912 1.20087 0.91004 0.96238 1.16632 1.20348 0.87887 0.81178 0.71141 1.90865 1.71825 1.31999 1.48858 1.84564 1.28338 1.34744 1.84549 1.23207 0.88300 0.98084 0.87685 1.67879 1.08498 1.31328 1.17692 0.92047 0.85962 0.82877 0.81559 0.81544 0.72200 0.78813 0.80454 0.70269 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -58.79 13.67 21.62 0.30 -58.49 16 2 C -0.02 -1.20 5.49 84.85 0.47 -0.73 16 3 Si 1.02 43.99 29.55 68.60 2.03 46.01 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.43 -25.56 9.49 67.93 0.64 -24.92 16 8 H 0.11 5.70 5.21 -2.92 -0.02 5.69 16 9 O -0.19 -11.75 7.84 0.86 0.01 -11.75 16 10 C 0.15 7.53 6.66 22.91 0.15 7.68 16 11 C -0.26 -10.60 9.16 22.36 0.20 -10.40 16 12 C -0.04 -1.10 10.03 22.30 0.22 -0.88 16 13 C -0.20 -4.76 10.02 22.25 0.22 -4.54 16 14 C -0.03 -0.75 9.53 22.52 0.21 -0.53 16 15 C -0.25 -10.09 5.89 -19.99 -0.12 -10.21 16 16 C 0.53 23.50 7.72 86.68 0.67 24.17 16 17 O -0.49 -28.49 13.40 16.92 0.23 -28.26 16 18 N -0.64 -19.29 5.31 -311.44 -1.65 -20.94 16 19 C 0.38 11.76 7.41 133.11 0.99 12.74 16 20 C -0.20 -3.82 9.86 22.21 0.22 -3.60 16 21 C 0.02 0.40 9.65 22.47 0.22 0.62 16 22 C -0.23 -5.89 5.89 -20.00 -0.12 -6.01 16 23 C 0.55 12.73 8.27 70.25 0.58 13.32 16 24 O -0.54 -14.24 17.20 19.80 0.34 -13.90 16 25 O -0.51 -9.32 12.70 -56.53 -0.72 -10.04 16 26 C 0.19 5.98 10.79 85.05 0.92 6.90 16 27 N -0.54 -21.23 7.84 -192.09 -1.51 -22.74 16 28 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 29 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 30 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 31 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.17 2.55 6.42 -2.91 -0.02 2.53 16 33 H 0.44 7.87 6.74 -92.71 -0.62 7.25 16 34 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.18 2.52 7.73 -2.91 -0.02 2.50 16 36 H 0.43 3.49 9.11 -74.05 -0.67 2.82 16 37 H 0.17 5.14 7.61 -2.91 -0.02 5.12 16 Total: -1.00 -96.93 335.63 4.39 -92.54 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.11 Total: 23.94 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 5.48 Total: 3.61 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -2.86 Total: -102.17 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -0.14 Total: -63.95 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -96.93 4.39 -92.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.000 kcal (2) G-P(sol) polarization free energy of solvation -96.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds