Wall clock time and date at job start Tue Mar 31 2020 15:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99873 * 2 1 4 4 H 1.48496 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47503 * 300.00856 * 3 2 1 6 6 H 1.48504 * 109.46851 * 60.00744 * 3 2 1 7 7 C 1.40024 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99971 * 179.97438 * 7 2 1 9 9 C 1.41329 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.40623 * 119.78828 * 179.97438 * 9 7 2 11 11 C 1.38311 * 119.13748 * 180.02562 * 10 9 7 12 12 C 1.38684 * 118.67254 * 0.02562 * 11 10 9 13 13 C 1.39672 * 119.49429 * 359.97438 * 12 11 10 14 14 N 1.39127 * 119.57715 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99813 * 185.68983 * 14 13 12 16 16 O 1.21653 * 120.00352 * 354.95281 * 15 14 13 17 17 C 1.46972 * 119.99790 * 174.95711 * 15 14 13 18 18 C 1.37770 * 125.76892 * 180.02562 * 17 15 14 19 19 C 1.39779 * 106.89621 * 179.70453 * 18 17 15 20 20 C 1.38131 * 106.83673 * 0.40842 * 19 18 17 21 21 C 1.46280 * 125.82312 * 179.84491 * 20 19 18 22 22 C 1.35366 * 119.99851 * 221.41126 * 21 20 19 23 23 C 1.46163 * 120.00323 * 8.56761 * 22 21 20 24 24 O 1.21639 * 120.00025 * 6.73698 * 23 22 21 25 25 O 1.34932 * 120.00109 * 186.74300 * 23 22 21 26 26 O 1.34582 * 108.35388 * 359.58612 * 20 19 18 27 27 N 1.31952 * 120.84550 * 0.27799 * 13 12 11 28 28 H 0.96996 * 120.00217 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.42501 * 0.05004 * 10 9 7 30 30 H 1.07996 * 120.66281 * 179.97438 * 11 10 9 31 31 H 1.08001 * 120.25109 * 180.02562 * 12 11 10 32 32 H 0.97002 * 119.99796 * 5.69309 * 14 13 12 33 33 H 1.07997 * 126.55299 * 359.96338 * 18 17 15 34 34 H 1.07994 * 126.58264 * 180.27855 * 19 18 17 35 35 H 1.08000 * 119.99892 * 41.41206 * 21 20 19 36 36 H 1.08002 * 119.99695 * 188.56914 * 22 21 20 37 37 H 0.96703 * 114.00186 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3966 -1.2124 6 1 1.8827 2.3964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0086 -3.6518 -0.0016 11 6 1.3034 -4.8417 -0.0022 12 6 -0.0826 -4.7938 -0.0021 13 6 -0.7278 -3.5551 -0.0010 14 7 -2.1182 -3.5051 -0.0005 15 6 -2.7499 -2.3201 -0.1151 16 8 -2.1076 -1.2870 -0.1267 17 6 -4.2147 -2.2759 -0.2261 18 6 -4.9791 -1.1363 -0.3485 19 6 -6.3123 -1.5481 -0.4303 20 6 -6.3111 -2.9268 -0.3451 21 6 -7.4929 -3.7880 -0.3838 22 6 -7.5860 -4.8475 0.4536 23 6 -6.6021 -5.0250 1.5198 24 8 -5.7738 -4.1601 1.7332 25 8 -6.6126 -6.1482 2.2674 26 8 -5.0368 -3.3429 -0.2262 27 7 -0.0357 -2.4317 -0.0055 28 1 -0.4850 0.8400 0.0004 29 1 3.0886 -3.6558 -0.0017 30 1 1.8219 -5.7891 -0.0034 31 1 -0.6585 -5.7074 -0.0021 32 1 -2.6329 -4.3231 0.0825 33 1 -4.6170 -0.1193 -0.3799 34 1 -7.1775 -0.9107 -0.5373 35 1 -8.2911 -3.5786 -1.0805 36 1 -8.3873 -5.5617 0.3338 37 1 -5.9248 -6.1751 2.9466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:33 Heat of formation + Delta-G solvation = -22.877636 kcal Electronic energy + Delta-G solvation = -27031.033166 eV Core-core repulsion = 22935.114635 eV Total energy + Delta-G solvation = -4095.918531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.33089 -40.19244 -39.15277 -37.39851 -36.32910 -34.30303 -34.15972 -33.11169 -32.65631 -30.36110 -29.69402 -28.59210 -25.76888 -25.18414 -23.11942 -21.71471 -21.56356 -21.02815 -19.87413 -19.48560 -18.45412 -18.09711 -17.35987 -16.72493 -16.15118 -16.00917 -15.62926 -14.81548 -14.68751 -14.46900 -14.43757 -13.93626 -13.81849 -13.49738 -13.19943 -13.08956 -12.81401 -12.65939 -12.39654 -12.06173 -11.91308 -11.72031 -11.17944 -10.94409 -10.76247 -10.64375 -10.49113 -10.42640 -9.93966 -9.79409 -9.71339 -9.37138 -9.04960 -8.09562 -7.97965 -7.29134 -6.99695 -6.15976 -4.40892 0.24506 1.59257 2.44006 2.72608 2.83558 2.94714 3.02695 3.11372 3.18276 3.21845 3.26838 3.76965 4.02106 4.06488 4.42027 4.84361 4.92267 4.94546 5.03398 5.16836 5.49931 5.61514 5.86283 5.91206 6.01434 6.03993 6.12599 6.24737 6.47105 6.51190 6.63350 6.79045 6.83336 7.06464 7.21904 7.54056 7.59142 7.69518 7.79851 8.02008 8.16637 8.42194 8.70208 9.01514 9.10749 10.20878 10.47265 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.003593 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.795029 B = 7790.115877 C = 9141.475993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.660 5.660 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.424 4.424 8 H 0.084 0.916 9 C 0.271 3.729 10 C -0.302 4.302 11 C -0.036 4.036 12 C -0.353 4.353 13 C 0.371 3.629 14 N -0.653 5.653 15 C 0.557 3.443 16 O -0.381 6.381 17 C -0.026 4.026 18 C -0.149 4.149 19 C -0.177 4.177 20 C -0.002 4.002 21 C 0.023 3.977 22 C -0.184 4.184 23 C 0.493 3.507 24 O -0.488 6.488 25 O -0.509 6.509 26 O -0.133 6.133 27 N -0.475 5.475 28 H 0.273 0.727 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.404 0.596 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.580 -6.686 -0.176 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.279 5.279 2 C -0.171 4.171 3 Si 0.722 3.278 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.454 4.454 8 H 0.102 0.898 9 C 0.146 3.854 10 C -0.325 4.325 11 C -0.060 4.060 12 C -0.379 4.379 13 C 0.133 3.867 14 N -0.299 5.299 15 C 0.338 3.662 16 O -0.245 6.245 17 C -0.081 4.081 18 C -0.169 4.169 19 C -0.196 4.196 20 C -0.054 4.054 21 C 0.005 3.995 22 C -0.203 4.203 23 C 0.337 3.663 24 O -0.376 6.376 25 O -0.320 6.320 26 O -0.027 6.027 27 N -0.194 5.194 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.238 0.762 33 H 0.178 0.822 34 H 0.173 0.827 35 H 0.185 0.815 36 H 0.170 0.830 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -17.722 -4.963 -0.422 18.408 hybrid contribution 0.715 -0.581 0.556 1.076 sum -17.007 -5.543 0.133 17.888 Atomic orbital electron populations 1.70299 1.05925 1.27463 1.24200 1.26181 0.95102 1.00696 0.95090 0.86429 0.80866 0.82088 0.78402 1.18584 1.20018 1.20027 1.19629 0.94136 0.89318 1.42338 0.89802 1.18387 0.87011 0.92055 0.87946 1.21640 0.98614 0.93478 1.18797 1.20558 0.93066 0.96599 0.95760 1.20481 0.94829 0.94846 1.27710 1.18544 0.82804 0.91169 0.94219 1.43213 1.05424 1.08975 1.72329 1.17080 0.82583 0.85793 0.80788 1.91333 1.61255 1.30893 1.41019 1.23386 0.91702 0.85248 1.07756 1.21964 0.91825 0.99399 1.03708 1.22040 0.97956 0.92994 1.06620 1.20813 0.83581 0.93190 1.07830 1.21755 0.92560 0.89939 0.95257 1.22464 1.01069 1.00622 0.96136 1.21065 0.83450 0.79670 0.82162 1.91075 1.36750 1.41997 1.67767 1.85014 1.57661 1.41367 1.47973 1.84162 1.15309 1.34966 1.68241 1.68675 1.07240 1.23153 1.20359 0.91562 0.88428 0.88487 0.89008 0.76214 0.82172 0.82717 0.81549 0.82983 0.73218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.47 8.98 55.55 0.50 -17.97 16 2 C 0.06 1.54 5.50 -17.35 -0.10 1.45 16 3 Si 0.90 19.36 29.56 -169.99 -5.02 14.34 16 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.42 -11.73 9.14 -37.74 -0.34 -12.08 16 8 H 0.08 2.17 7.85 -52.48 -0.41 1.76 16 9 C 0.27 7.71 6.55 -84.99 -0.56 7.15 16 10 C -0.30 -7.69 9.83 -38.66 -0.38 -8.07 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.35 -8.19 9.95 -38.88 -0.39 -8.58 16 13 C 0.37 9.44 7.42 -155.08 -1.15 8.28 16 14 N -0.65 -14.29 5.37 -12.52 -0.07 -14.35 16 15 C 0.56 12.51 7.75 -12.72 -0.10 12.41 16 16 O -0.38 -10.00 12.62 5.23 0.07 -9.93 16 17 C -0.03 -0.48 7.16 -36.22 -0.26 -0.74 16 18 C -0.15 -2.41 10.64 -39.18 -0.42 -2.83 16 19 C -0.18 -2.26 10.88 -39.04 -0.42 -2.68 16 20 C 0.00 -0.03 5.46 -36.39 -0.20 -0.23 16 21 C 0.02 0.19 10.15 -37.38 -0.38 -0.19 16 22 C -0.18 -1.49 10.20 -37.43 -0.38 -1.87 16 23 C 0.49 5.53 8.04 33.91 0.27 5.80 16 24 O -0.49 -7.48 13.38 -27.52 -0.37 -7.85 16 25 O -0.51 -4.52 13.56 -41.13 -0.56 -5.08 16 26 O -0.13 -2.17 7.78 -20.59 -0.16 -2.33 16 27 N -0.48 -13.64 5.73 -10.28 -0.06 -13.70 16 28 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 29 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 30 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.40 7.47 8.45 -40.82 -0.35 7.13 16 33 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 34 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.41 2.37 8.98 45.56 0.41 2.78 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -36.24 337.12 -8.24 -44.48 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -2.44 Total: 10.68 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -5.20 Total: -3.37 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.37 Total: -46.02 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -1.02 Total: -25.19 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.24 -8.24 -44.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.599 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds