Wall clock time and date at job start Tue Mar 31 2020 15:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99873 * 2 1 4 4 H 1.48496 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47503 * 300.00856 * 3 2 1 6 6 H 1.48504 * 109.46851 * 60.00744 * 3 2 1 7 7 C 1.40024 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99971 * 179.97438 * 7 2 1 9 9 C 1.41329 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.40623 * 119.78828 * 179.97438 * 9 7 2 11 11 C 1.38311 * 119.13748 * 180.02562 * 10 9 7 12 12 C 1.38684 * 118.67254 * 0.02562 * 11 10 9 13 13 C 1.39672 * 119.49429 * 359.97438 * 12 11 10 14 14 N 1.39127 * 119.57715 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99813 * 185.68983 * 14 13 12 16 16 O 1.21653 * 120.00352 * 354.95281 * 15 14 13 17 17 C 1.46972 * 119.99790 * 174.95711 * 15 14 13 18 18 C 1.37770 * 125.76892 * 180.02562 * 17 15 14 19 19 C 1.39779 * 106.89621 * 179.70453 * 18 17 15 20 20 C 1.38131 * 106.83673 * 0.40842 * 19 18 17 21 21 C 1.46280 * 125.82312 * 179.84491 * 20 19 18 22 22 C 1.35366 * 119.99851 * 221.41126 * 21 20 19 23 23 C 1.46163 * 120.00323 * 8.56761 * 22 21 20 24 24 O 1.21639 * 120.00025 * 6.73698 * 23 22 21 25 25 O 1.34932 * 120.00109 * 186.74300 * 23 22 21 26 26 O 1.34582 * 108.35388 * 359.58612 * 20 19 18 27 27 N 1.31952 * 120.84550 * 0.27799 * 13 12 11 28 28 H 0.96996 * 120.00217 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.42501 * 0.05004 * 10 9 7 30 30 H 1.07996 * 120.66281 * 179.97438 * 11 10 9 31 31 H 1.08001 * 120.25109 * 180.02562 * 12 11 10 32 32 H 0.97002 * 119.99796 * 5.69309 * 14 13 12 33 33 H 1.07997 * 126.55299 * 359.96338 * 18 17 15 34 34 H 1.07994 * 126.58264 * 180.27855 * 19 18 17 35 35 H 1.08000 * 119.99892 * 41.41206 * 21 20 19 36 36 H 1.08002 * 119.99695 * 188.56914 * 22 21 20 37 37 H 0.96703 * 114.00186 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3966 -1.2124 6 1 1.8827 2.3964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0086 -3.6518 -0.0016 11 6 1.3034 -4.8417 -0.0022 12 6 -0.0826 -4.7938 -0.0021 13 6 -0.7278 -3.5551 -0.0010 14 7 -2.1182 -3.5051 -0.0005 15 6 -2.7499 -2.3201 -0.1151 16 8 -2.1076 -1.2870 -0.1267 17 6 -4.2147 -2.2759 -0.2261 18 6 -4.9791 -1.1363 -0.3485 19 6 -6.3123 -1.5481 -0.4303 20 6 -6.3111 -2.9268 -0.3451 21 6 -7.4929 -3.7880 -0.3838 22 6 -7.5860 -4.8475 0.4536 23 6 -6.6021 -5.0250 1.5198 24 8 -5.7738 -4.1601 1.7332 25 8 -6.6126 -6.1482 2.2674 26 8 -5.0368 -3.3429 -0.2262 27 7 -0.0357 -2.4317 -0.0055 28 1 -0.4850 0.8400 0.0004 29 1 3.0886 -3.6558 -0.0017 30 1 1.8219 -5.7891 -0.0034 31 1 -0.6585 -5.7074 -0.0021 32 1 -2.6329 -4.3231 0.0825 33 1 -4.6170 -0.1193 -0.3799 34 1 -7.1775 -0.9107 -0.5373 35 1 -8.2911 -3.5786 -1.0805 36 1 -8.3873 -5.5617 0.3338 37 1 -5.9248 -6.1751 2.9466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:32 Heat of formation + Delta-G solvation = -47.597445 kcal Electronic energy + Delta-G solvation = -27032.105097 eV Core-core repulsion = 22935.114635 eV Total energy + Delta-G solvation = -4096.990462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.48995 -41.11135 -40.89796 -39.24991 -37.15418 -36.10227 -35.09973 -34.88236 -33.87373 -32.30496 -31.36953 -29.99156 -27.59699 -26.34433 -24.51496 -23.40354 -22.80988 -22.59349 -21.22620 -20.58564 -19.90048 -19.22098 -18.75826 -18.03852 -17.92995 -17.19774 -16.53697 -16.50853 -16.32341 -15.87300 -15.74141 -15.55143 -15.20338 -14.94506 -14.75577 -14.15172 -14.08255 -14.00897 -13.93647 -13.67300 -13.23947 -12.93029 -12.75839 -12.57868 -12.56611 -12.36751 -11.78093 -11.70233 -11.62774 -11.22847 -11.12256 -10.95256 -10.86433 -9.96755 -9.23483 -9.22604 -8.89745 -8.09455 -6.46086 -0.59631 0.36171 0.93732 1.21882 1.39392 1.43195 1.52022 1.54947 1.63696 2.05872 2.23354 2.25377 2.35886 2.36527 2.96669 3.46639 3.81373 3.94742 4.00119 4.27767 4.32900 4.44090 4.61386 4.65125 4.71528 4.77248 4.78913 4.91559 4.96144 5.00736 5.19874 5.23834 5.46109 5.53939 5.61789 5.71621 5.85972 5.91106 6.11265 6.29166 6.57707 6.77031 6.92409 7.01371 7.36998 8.25621 8.53841 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.003593 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.795029 B = 7790.115877 C = 9141.475993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.698 5.698 2 C 0.010 3.990 3 Si 0.980 3.020 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.462 4.462 8 H 0.090 0.910 9 C 0.236 3.764 10 C -0.322 4.322 11 C -0.032 4.032 12 C -0.345 4.345 13 C 0.346 3.654 14 N -0.647 5.647 15 C 0.552 3.448 16 O -0.433 6.433 17 C -0.074 4.074 18 C -0.144 4.144 19 C -0.182 4.182 20 C 0.013 3.987 21 C 0.022 3.978 22 C -0.172 4.172 23 C 0.485 3.515 24 O -0.539 6.539 25 O -0.503 6.503 26 O -0.142 6.142 27 N -0.510 5.510 28 H 0.272 0.728 29 H 0.110 0.890 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.417 0.583 33 H 0.154 0.846 34 H 0.197 0.803 35 H 0.223 0.777 36 H 0.197 0.803 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.310 -8.272 -0.645 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.215 4.215 3 Si 0.800 3.200 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.492 4.492 8 H 0.108 0.892 9 C 0.110 3.890 10 C -0.345 4.345 11 C -0.056 4.056 12 C -0.370 4.370 13 C 0.108 3.892 14 N -0.294 5.294 15 C 0.336 3.664 16 O -0.300 6.300 17 C -0.128 4.128 18 C -0.165 4.165 19 C -0.200 4.200 20 C -0.039 4.039 21 C 0.005 3.995 22 C -0.190 4.190 23 C 0.331 3.669 24 O -0.431 6.431 25 O -0.314 6.314 26 O -0.037 6.037 27 N -0.229 5.229 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.254 0.746 33 H 0.172 0.828 34 H 0.214 0.786 35 H 0.240 0.760 36 H 0.214 0.786 37 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -20.481 -6.629 -0.880 21.545 hybrid contribution 1.331 -0.379 0.762 1.580 sum -19.150 -7.008 -0.117 20.392 Atomic orbital electron populations 1.70508 1.07616 1.28196 1.25402 1.27102 0.95963 1.04301 0.94150 0.85202 0.79592 0.76756 0.78410 1.17491 1.19484 1.19591 1.19975 0.94613 0.90294 1.44345 0.89177 1.18924 0.87645 0.93674 0.88753 1.21854 0.99438 0.93611 1.19616 1.21035 0.93133 0.97602 0.93789 1.20934 0.95439 0.95316 1.25339 1.19060 0.84233 0.91587 0.94300 1.43194 1.04374 1.09786 1.72025 1.17552 0.84344 0.85144 0.79369 1.91303 1.63217 1.32151 1.43360 1.22520 0.90174 0.86726 1.13385 1.22205 0.93612 0.98641 1.01994 1.22438 0.97406 0.93489 1.06687 1.21933 0.83593 0.94503 1.03871 1.22432 0.91592 0.88817 0.96699 1.22924 1.00813 1.00838 0.94458 1.21842 0.83224 0.79219 0.82603 1.91085 1.39011 1.43734 1.69250 1.84998 1.58004 1.40353 1.48092 1.84118 1.16580 1.34354 1.68633 1.68641 1.07731 1.25111 1.21447 0.91769 0.87170 0.84098 0.85414 0.74630 0.82782 0.78566 0.76024 0.78609 0.71886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -41.56 8.98 21.84 0.20 -41.36 16 2 C 0.01 0.55 5.50 85.29 0.47 1.02 16 3 Si 0.98 41.51 29.56 68.60 2.03 43.54 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.46 -26.82 9.14 23.46 0.21 -26.61 16 8 H 0.09 4.86 7.85 -2.91 -0.02 4.84 16 9 C 0.24 14.03 6.55 40.21 0.26 14.30 16 10 C -0.32 -16.67 9.83 22.87 0.22 -16.45 16 11 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 12 C -0.34 -15.80 9.95 22.72 0.23 -15.58 16 13 C 0.35 18.24 7.42 133.28 0.99 19.23 16 14 N -0.65 -29.61 5.37 -311.76 -1.68 -31.28 16 15 C 0.55 26.51 7.75 86.53 0.67 27.19 16 16 O -0.43 -24.56 12.62 -4.20 -0.05 -24.61 16 17 C -0.07 -2.87 7.16 24.45 0.17 -2.70 16 18 C -0.14 -4.79 10.64 22.53 0.24 -4.55 16 19 C -0.18 -4.28 10.88 22.62 0.25 -4.03 16 20 C 0.01 0.31 5.46 24.34 0.13 0.45 16 21 C 0.02 0.25 10.15 23.70 0.24 0.49 16 22 C -0.17 -2.00 10.20 23.67 0.24 -1.76 16 23 C 0.48 9.83 8.04 69.88 0.56 10.39 16 24 O -0.54 -16.28 13.38 27.17 0.36 -15.92 16 25 O -0.50 -7.81 13.56 -58.47 -0.79 -8.60 16 26 O -0.14 -4.63 7.78 14.31 0.11 -4.52 16 27 N -0.51 -30.85 5.73 -186.42 -1.07 -31.92 16 28 H 0.27 15.14 8.29 -92.71 -0.77 14.37 16 29 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 30 H 0.14 5.03 8.06 -2.91 -0.02 5.01 16 31 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.42 15.94 8.45 -92.71 -0.78 15.15 16 33 H 0.15 5.15 8.06 -2.91 -0.02 5.13 16 34 H 0.20 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.22 0.08 8.06 -2.91 -0.02 0.06 16 36 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16 37 H 0.42 4.33 8.98 -74.06 -0.67 3.67 16 Total: -1.00 -87.03 337.12 3.95 -83.08 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: -0.28 Total: 31.41 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 5.12 Total: 0.18 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -2.55 Total: -104.57 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -0.37 Total: -53.65 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -87.03 3.95 -83.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.486 kcal (2) G-P(sol) polarization free energy of solvation -87.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds