Wall clock time and date at job start Tue Mar 31 2020 15:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86793 * 120.00148 * 2 1 4 4 H 1.48497 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47085 * 299.99934 * 3 2 1 6 6 H 1.48499 * 109.47447 * 59.99749 * 3 2 1 7 7 C 1.40023 * 119.99443 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99597 * 180.02562 * 7 2 1 9 9 C 1.41324 * 120.00475 * 359.97438 * 7 2 1 10 10 C 1.40620 * 119.78973 * 180.02562 * 9 7 2 11 11 C 1.38318 * 119.13740 * 180.02562 * 10 9 7 12 12 C 1.38681 * 118.67097 * 0.02562 * 11 10 9 13 13 C 1.39672 * 119.49597 * 359.97438 * 12 11 10 14 14 N 1.39130 * 119.57683 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99767 * 185.31977 * 14 13 12 16 16 O 1.21649 * 119.99973 * 354.85801 * 15 14 13 17 17 C 1.46964 * 119.99655 * 174.84911 * 15 14 13 18 18 C 1.37769 * 125.76930 * 179.97438 * 17 15 14 19 19 C 1.39777 * 106.89820 * 179.78097 * 18 17 15 20 20 C 1.38119 * 106.83661 * 0.35693 * 19 18 17 21 21 C 1.46287 * 125.82070 * 179.90676 * 20 19 18 22 22 C 1.35362 * 119.99455 * 179.43405 * 21 20 19 23 23 C 1.46177 * 119.99911 * 179.97438 * 22 21 20 24 24 O 1.21641 * 119.99624 * 0.02562 * 23 22 21 25 25 O 1.34927 * 119.99997 * 180.02562 * 23 22 21 26 26 O 1.34585 * 108.35151 * 359.63716 * 20 19 18 27 27 N 1.31952 * 120.84271 * 0.26110 * 13 12 11 28 28 H 0.97002 * 119.99319 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.43128 * 0.02720 * 10 9 7 30 30 H 1.07995 * 120.66213 * 179.97438 * 11 10 9 31 31 H 1.08003 * 120.25130 * 180.02562 * 12 11 10 32 32 H 0.96998 * 119.99934 * 5.32122 * 14 13 12 33 33 H 1.08007 * 126.55002 * 0.02562 * 18 17 15 34 34 H 1.08005 * 126.57768 * 180.22233 * 19 18 17 35 35 H 1.07994 * 120.00417 * 359.71378 * 21 20 19 36 36 H 1.08003 * 120.00856 * 0.02562 * 22 21 20 37 37 H 0.96699 * 113.99854 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8828 2.3964 -1.2126 6 1 1.8828 2.3964 1.2124 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3008 -2.4366 0.0016 10 6 2.0084 -3.6518 0.0027 11 6 1.3032 -4.8417 0.0032 12 6 -0.0828 -4.7938 0.0021 13 6 -0.7280 -3.5550 0.0011 14 7 -2.1184 -3.5049 -0.0006 15 6 -2.7498 -2.3192 -0.1098 16 8 -2.1076 -1.2861 -0.1128 17 6 -4.2142 -2.2746 -0.2256 18 6 -4.9784 -1.1342 -0.3423 19 6 -6.3114 -1.5456 -0.4300 20 6 -6.3102 -2.9248 -0.3551 21 6 -7.4918 -3.7859 -0.4039 22 6 -7.3527 -5.1303 -0.3313 23 6 -8.5334 -5.9909 -0.3796 24 8 -9.6407 -5.4987 -0.4854 25 8 -8.3949 -7.3310 -0.3067 26 8 -5.0361 -3.3415 -0.2354 27 7 -0.0358 -2.4317 -0.0041 28 1 -0.4849 0.8401 -0.0004 29 1 3.0884 -3.6560 0.0032 30 1 1.8216 -5.7891 0.0037 31 1 -0.6588 -5.7073 0.0029 32 1 -2.6333 -4.3233 0.0769 33 1 -4.6163 -0.1169 -0.3660 34 1 -7.1764 -0.9073 -0.5341 35 1 -8.4746 -3.3491 -0.5025 36 1 -6.3696 -5.5674 -0.2369 37 1 -9.2307 -7.8156 -0.3471 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077659.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:37 Heat of formation + Delta-G solvation = -32.830163 kcal Electronic energy + Delta-G solvation = -26033.842886 eV Core-core repulsion = 21937.492781 eV Total energy + Delta-G solvation = -4096.350105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.63324 -40.43113 -39.30522 -37.51748 -36.52160 -34.43947 -34.29764 -33.27156 -32.93498 -30.44100 -29.89138 -28.79817 -25.92726 -25.32070 -23.16014 -21.80994 -21.69667 -21.18972 -19.97081 -19.68223 -18.63821 -18.22194 -17.21475 -17.05200 -16.42268 -16.24332 -15.86525 -15.60023 -14.75555 -14.52197 -14.22905 -14.17036 -13.94525 -13.62098 -13.26539 -13.12460 -12.86683 -12.70856 -12.58882 -12.18529 -11.98368 -11.97805 -11.23488 -11.04294 -10.99898 -10.96281 -10.70157 -10.55444 -10.03195 -10.00656 -9.83790 -9.53756 -9.12355 -8.27957 -8.05607 -7.38397 -7.09101 -6.23507 -4.47101 -0.00610 1.44540 2.22404 2.45972 2.74832 2.80671 2.81459 3.03181 3.14289 3.17680 3.21351 3.58256 3.83646 4.01274 4.44343 4.64255 4.74873 4.85001 4.92154 4.96155 5.37682 5.58688 5.62492 5.76722 5.84861 5.94850 6.01742 6.05228 6.25732 6.39634 6.53061 6.66431 6.77316 6.81884 7.14638 7.45303 7.48065 7.50397 7.73616 7.91422 8.08615 8.33645 8.60453 8.91808 8.99546 10.12390 10.40083 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002803 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.148851 B = 9988.366600 C =11555.806946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.662 5.662 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.422 4.422 8 H 0.084 0.916 9 C 0.270 3.730 10 C -0.300 4.300 11 C -0.036 4.036 12 C -0.351 4.351 13 C 0.369 3.631 14 N -0.653 5.653 15 C 0.554 3.446 16 O -0.375 6.375 17 C -0.022 4.022 18 C -0.146 4.146 19 C -0.157 4.157 20 C -0.015 4.015 21 C 0.035 3.965 22 C -0.196 4.196 23 C 0.515 3.485 24 O -0.522 6.522 25 O -0.502 6.502 26 O -0.154 6.154 27 N -0.476 5.476 28 H 0.272 0.728 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.405 0.595 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.147 0.853 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.200 -6.081 -0.579 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.281 5.281 2 C -0.171 4.171 3 Si 0.723 3.277 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.453 4.453 8 H 0.102 0.898 9 C 0.145 3.855 10 C -0.323 4.323 11 C -0.060 4.060 12 C -0.377 4.377 13 C 0.131 3.869 14 N -0.299 5.299 15 C 0.334 3.666 16 O -0.238 6.238 17 C -0.077 4.077 18 C -0.166 4.166 19 C -0.176 4.176 20 C -0.066 4.066 21 C 0.017 3.983 22 C -0.215 4.215 23 C 0.361 3.639 24 O -0.414 6.414 25 O -0.312 6.312 26 O -0.049 6.049 27 N -0.195 5.195 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.239 0.761 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.164 0.836 37 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -15.165 -4.263 -0.593 15.764 hybrid contribution -0.139 -0.866 -0.001 0.877 sum -15.304 -5.129 -0.594 16.152 Atomic orbital electron populations 1.70294 1.05959 1.27466 1.24333 1.26179 0.95134 1.00748 0.95005 0.86412 0.80899 0.81964 0.78423 1.18558 1.20004 1.20005 1.19636 0.94186 0.89292 1.42138 0.89753 1.18375 0.86957 0.92088 0.88031 1.21652 0.98682 0.93450 1.18540 1.20579 0.93094 0.96656 0.95677 1.20485 0.94846 0.94846 1.27532 1.18507 0.82642 0.91223 0.94528 1.43210 1.05606 1.08781 1.72347 1.17070 0.82347 0.86003 0.81217 1.91360 1.60861 1.30934 1.40633 1.23659 0.91851 0.84990 1.07201 1.22111 0.91727 0.99782 1.02995 1.22254 0.98345 0.93032 1.03969 1.20885 0.82667 0.93006 1.10022 1.21616 0.94711 0.91765 0.90241 1.22246 0.97816 0.92846 1.08623 1.20845 0.89188 0.81559 0.72331 1.90950 1.27996 1.75860 1.46570 1.85078 1.41108 1.19503 1.85470 1.84086 1.15732 1.35483 1.69614 1.68642 1.07325 1.23172 1.20369 0.91581 0.88365 0.88393 0.88851 0.76078 0.81538 0.81983 0.81964 0.83558 0.73299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.73 8.98 55.55 0.50 -17.24 16 2 C 0.06 1.49 5.50 -17.34 -0.10 1.39 16 3 Si 0.90 18.75 29.56 -169.99 -5.02 13.73 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 7 C -0.42 -11.31 9.14 -37.74 -0.34 -11.65 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 9 C 0.27 7.42 6.55 -85.00 -0.56 6.87 16 10 C -0.30 -7.36 9.83 -38.65 -0.38 -7.74 16 11 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 12 C -0.35 -7.72 9.95 -38.88 -0.39 -8.10 16 13 C 0.37 8.83 7.42 -155.07 -1.15 7.67 16 14 N -0.65 -12.90 5.37 -12.52 -0.07 -12.96 16 15 C 0.55 11.16 7.75 -12.73 -0.10 11.06 16 16 O -0.37 -9.09 12.61 5.23 0.07 -9.03 16 17 C -0.02 -0.36 7.16 -36.22 -0.26 -0.62 16 18 C -0.15 -2.01 10.64 -39.18 -0.42 -2.42 16 19 C -0.16 -1.69 10.88 -39.05 -0.42 -2.12 16 20 C -0.01 -0.17 7.02 -36.39 -0.26 -0.42 16 21 C 0.03 0.32 9.64 -37.37 -0.36 -0.04 16 22 C -0.20 -1.80 9.80 -37.42 -0.37 -2.17 16 23 C 0.51 4.84 8.23 33.92 0.28 5.12 16 24 O -0.52 -6.12 16.97 -19.37 -0.33 -6.45 16 25 O -0.50 -3.68 13.56 -41.12 -0.56 -4.23 16 26 O -0.15 -2.09 10.02 3.90 0.04 -2.05 16 27 N -0.48 -13.05 5.73 -10.28 -0.06 -13.11 16 28 H 0.27 6.78 8.29 -40.82 -0.34 6.44 16 29 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 30 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.40 6.41 8.45 -40.82 -0.35 6.07 16 33 H 0.17 2.21 8.06 -52.48 -0.42 1.79 16 34 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.16 1.19 7.52 -52.49 -0.39 0.79 16 36 H 0.15 1.30 7.78 -52.48 -0.41 0.89 16 37 H 0.41 1.19 8.98 45.56 0.41 1.60 16 LS Contribution 342.96 15.07 5.17 5.17 Total: -1.00 -33.57 342.96 -7.88 -41.45 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -2.40 Total: 9.09 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -5.22 Total: -4.37 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.37 Total: -43.31 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.78 Total: -21.76 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.57 -7.88 -41.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077659.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.618 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds