Wall clock time and date at job start Tue Mar 31 2020 15:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86793 * 120.00148 * 2 1 4 4 H 1.48497 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47085 * 299.99934 * 3 2 1 6 6 H 1.48499 * 109.47447 * 59.99749 * 3 2 1 7 7 C 1.40023 * 119.99443 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99597 * 180.02562 * 7 2 1 9 9 C 1.41324 * 120.00475 * 359.97438 * 7 2 1 10 10 C 1.40620 * 119.78973 * 180.02562 * 9 7 2 11 11 C 1.38318 * 119.13740 * 180.02562 * 10 9 7 12 12 C 1.38681 * 118.67097 * 0.02562 * 11 10 9 13 13 C 1.39672 * 119.49597 * 359.97438 * 12 11 10 14 14 N 1.39130 * 119.57683 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99767 * 185.31977 * 14 13 12 16 16 O 1.21649 * 119.99973 * 354.85801 * 15 14 13 17 17 C 1.46964 * 119.99655 * 174.84911 * 15 14 13 18 18 C 1.37769 * 125.76930 * 179.97438 * 17 15 14 19 19 C 1.39777 * 106.89820 * 179.78097 * 18 17 15 20 20 C 1.38119 * 106.83661 * 0.35693 * 19 18 17 21 21 C 1.46287 * 125.82070 * 179.90676 * 20 19 18 22 22 C 1.35362 * 119.99455 * 179.43405 * 21 20 19 23 23 C 1.46177 * 119.99911 * 179.97438 * 22 21 20 24 24 O 1.21641 * 119.99624 * 0.02562 * 23 22 21 25 25 O 1.34927 * 119.99997 * 180.02562 * 23 22 21 26 26 O 1.34585 * 108.35151 * 359.63716 * 20 19 18 27 27 N 1.31952 * 120.84271 * 0.26110 * 13 12 11 28 28 H 0.97002 * 119.99319 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.43128 * 0.02720 * 10 9 7 30 30 H 1.07995 * 120.66213 * 179.97438 * 11 10 9 31 31 H 1.08003 * 120.25130 * 180.02562 * 12 11 10 32 32 H 0.96998 * 119.99934 * 5.32122 * 14 13 12 33 33 H 1.08007 * 126.55002 * 0.02562 * 18 17 15 34 34 H 1.08005 * 126.57768 * 180.22233 * 19 18 17 35 35 H 1.07994 * 120.00417 * 359.71378 * 21 20 19 36 36 H 1.08003 * 120.00856 * 0.02562 * 22 21 20 37 37 H 0.96699 * 113.99854 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8828 2.3964 -1.2126 6 1 1.8828 2.3964 1.2124 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3008 -2.4366 0.0016 10 6 2.0084 -3.6518 0.0027 11 6 1.3032 -4.8417 0.0032 12 6 -0.0828 -4.7938 0.0021 13 6 -0.7280 -3.5550 0.0011 14 7 -2.1184 -3.5049 -0.0006 15 6 -2.7498 -2.3192 -0.1098 16 8 -2.1076 -1.2861 -0.1128 17 6 -4.2142 -2.2746 -0.2256 18 6 -4.9784 -1.1342 -0.3423 19 6 -6.3114 -1.5456 -0.4300 20 6 -6.3102 -2.9248 -0.3551 21 6 -7.4918 -3.7859 -0.4039 22 6 -7.3527 -5.1303 -0.3313 23 6 -8.5334 -5.9909 -0.3796 24 8 -9.6407 -5.4987 -0.4854 25 8 -8.3949 -7.3310 -0.3067 26 8 -5.0361 -3.3415 -0.2354 27 7 -0.0358 -2.4317 -0.0041 28 1 -0.4849 0.8401 -0.0004 29 1 3.0884 -3.6560 0.0032 30 1 1.8216 -5.7891 0.0037 31 1 -0.6588 -5.7073 0.0029 32 1 -2.6333 -4.3233 0.0769 33 1 -4.6163 -0.1169 -0.3660 34 1 -7.1764 -0.9073 -0.5341 35 1 -8.4746 -3.3491 -0.5025 36 1 -6.3696 -5.5674 -0.2369 37 1 -9.2307 -7.8156 -0.3471 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077659.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:36 Heat of formation + Delta-G solvation = -54.689787 kcal Electronic energy + Delta-G solvation = -26034.790790 eV Core-core repulsion = 21937.492781 eV Total energy + Delta-G solvation = -4097.298009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.67105 -41.15805 -40.95800 -39.25840 -37.20093 -36.10528 -35.19934 -34.92411 -34.08971 -32.28041 -31.40259 -30.15522 -27.60673 -26.51006 -24.45166 -23.38603 -22.76145 -22.67210 -21.28093 -20.63905 -19.91458 -19.31213 -18.70715 -18.04514 -17.79590 -17.49848 -16.60282 -16.59082 -16.49309 -16.29108 -15.76653 -15.63596 -15.26333 -14.85871 -14.73998 -14.22376 -14.12908 -14.01417 -13.73581 -13.59156 -13.33082 -12.91563 -12.73937 -12.65271 -12.55805 -12.34488 -11.81745 -11.79248 -11.76486 -11.61568 -11.17469 -11.01604 -10.92342 -9.93898 -9.28790 -9.22393 -8.88897 -8.08476 -6.43210 -0.87131 0.36029 0.95115 1.23357 1.37443 1.39267 1.41822 1.53218 1.56218 2.03273 2.10277 2.22407 2.27006 2.31910 2.98127 3.48320 3.74168 3.81082 4.02124 4.04787 4.23685 4.34486 4.49463 4.56673 4.68434 4.72964 4.80875 4.94159 4.96013 4.99992 5.08546 5.26086 5.32282 5.47642 5.62772 5.69817 5.79944 5.90828 6.12303 6.31163 6.59872 6.77864 6.88084 7.03995 7.36496 8.27119 8.55059 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002803 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.148851 B = 9988.366600 C =11555.806946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.011 3.989 3 Si 0.977 3.023 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.461 4.461 8 H 0.088 0.912 9 C 0.236 3.764 10 C -0.323 4.323 11 C -0.033 4.033 12 C -0.342 4.342 13 C 0.348 3.652 14 N -0.645 5.645 15 C 0.551 3.449 16 O -0.427 6.427 17 C -0.059 4.059 18 C -0.137 4.137 19 C -0.151 4.151 20 C 0.001 3.999 21 C 0.037 3.963 22 C -0.191 4.191 23 C 0.521 3.479 24 O -0.546 6.546 25 O -0.500 6.500 26 O -0.157 6.157 27 N -0.510 5.510 28 H 0.272 0.728 29 H 0.108 0.892 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.422 0.578 33 H 0.165 0.835 34 H 0.202 0.798 35 H 0.186 0.814 36 H 0.149 0.851 37 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.163 -7.278 -0.708 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.214 4.214 3 Si 0.799 3.201 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.492 4.492 8 H 0.106 0.894 9 C 0.110 3.890 10 C -0.346 4.346 11 C -0.058 4.058 12 C -0.368 4.368 13 C 0.110 3.890 14 N -0.293 5.293 15 C 0.334 3.666 16 O -0.294 6.294 17 C -0.113 4.113 18 C -0.157 4.157 19 C -0.170 4.170 20 C -0.050 4.050 21 C 0.019 3.981 22 C -0.210 4.210 23 C 0.368 3.632 24 O -0.440 6.440 25 O -0.312 6.312 26 O -0.054 6.054 27 N -0.229 5.229 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.259 0.741 33 H 0.182 0.818 34 H 0.219 0.781 35 H 0.203 0.797 36 H 0.167 0.833 37 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -17.162 -5.541 -0.719 18.049 hybrid contribution 0.245 -0.799 0.035 0.836 sum -16.917 -6.340 -0.684 18.079 Atomic orbital electron populations 1.70481 1.07418 1.28178 1.25358 1.27039 0.96022 1.04084 0.94237 0.85231 0.79545 0.76967 0.78406 1.17807 1.19566 1.19530 1.19944 0.94550 0.90338 1.44359 0.89423 1.18882 0.87722 0.93560 0.88802 1.21842 0.99375 0.93697 1.19672 1.21050 0.93368 0.97514 0.93823 1.20958 0.95308 0.95531 1.24972 1.18999 0.84280 0.91436 0.94304 1.43179 1.04337 1.09841 1.71986 1.17488 0.84074 0.85273 0.79716 1.91339 1.62859 1.32273 1.42893 1.22715 0.90149 0.86331 1.12129 1.22333 0.93052 0.99210 1.01103 1.22623 0.98015 0.93138 1.03186 1.21440 0.82200 0.93860 1.07532 1.21779 0.94449 0.91527 0.90368 1.22384 0.98040 0.93130 1.07441 1.20785 0.88637 0.82116 0.71654 1.90950 1.28817 1.76407 1.47802 1.85043 1.42691 1.18658 1.84786 1.84036 1.16504 1.34782 1.70034 1.68612 1.07650 1.25213 1.21448 0.91687 0.87434 0.84277 0.85055 0.74074 0.81751 0.78081 0.79705 0.83320 0.71016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -39.28 8.98 21.84 0.20 -39.08 16 2 C 0.01 0.61 5.50 85.29 0.47 1.08 16 3 Si 0.98 40.00 29.56 68.60 2.03 42.03 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.46 -25.89 9.14 23.46 0.21 -25.68 16 8 H 0.09 4.61 7.85 -2.91 -0.02 4.58 16 9 C 0.24 13.49 6.55 40.21 0.26 13.76 16 10 C -0.32 -16.09 9.83 22.87 0.22 -15.87 16 11 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 12 C -0.34 -14.60 9.95 22.72 0.23 -14.38 16 13 C 0.35 16.93 7.42 133.28 0.99 17.92 16 14 N -0.65 -25.96 5.37 -311.76 -1.68 -27.63 16 15 C 0.55 23.15 7.75 86.53 0.67 23.82 16 16 O -0.43 -21.98 12.61 -4.18 -0.05 -22.03 16 17 C -0.06 -1.90 7.16 24.45 0.17 -1.73 16 18 C -0.14 -3.69 10.64 22.53 0.24 -3.45 16 19 C -0.15 -2.86 10.88 22.61 0.25 -2.61 16 20 C 0.00 0.01 7.02 24.34 0.17 0.18 16 21 C 0.04 0.55 9.64 23.70 0.23 0.78 16 22 C -0.19 -2.98 9.80 23.67 0.23 -2.74 16 23 C 0.52 8.42 8.23 69.88 0.57 8.99 16 24 O -0.55 -11.42 16.97 19.37 0.33 -11.09 16 25 O -0.50 -5.95 13.56 -58.43 -0.79 -6.75 16 26 O -0.16 -4.09 10.02 -8.98 -0.09 -4.18 16 27 N -0.51 -29.15 5.73 -186.43 -1.07 -30.22 16 28 H 0.27 14.34 8.29 -92.71 -0.77 13.57 16 29 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 30 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.42 13.21 8.45 -92.71 -0.78 12.43 16 33 H 0.16 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.19 1.99 7.52 -2.91 -0.02 1.96 16 36 H 0.15 2.26 7.78 -2.91 -0.02 2.24 16 37 H 0.43 1.32 8.98 -74.06 -0.67 0.65 16 Total: -1.00 -77.06 342.96 3.74 -73.32 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.28 Total: 26.77 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 5.15 Total: -1.14 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -2.55 Total: -96.93 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.61 Total: -44.05 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -77.06 3.74 -73.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077659.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.628 kcal (2) G-P(sol) polarization free energy of solvation -77.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds