Wall clock time and date at job start Tue Mar 31 2020 14:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86799 * 120.00278 * 2 1 4 4 H 1.48496 * 109.47337 * 270.00357 * 3 2 1 5 5 H 1.48506 * 109.46824 * 30.00425 * 3 2 1 6 6 H 1.48501 * 109.47218 * 150.00116 * 3 2 1 7 7 C 1.39938 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 168.03512 * 7 2 1 9 9 C 1.41438 * 120.00480 * 348.04032 * 7 2 1 10 10 C 1.40780 * 120.17978 * 150.00055 * 9 7 2 11 11 C 1.37711 * 120.04368 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.41101 * 359.71985 * 11 10 9 13 13 C 1.39890 * 120.35758 * 0.56198 * 12 11 10 14 14 C 1.47849 * 120.02707 * 179.71604 * 13 12 11 15 15 O 1.21572 * 120.00005 * 179.72251 * 14 13 12 16 16 N 1.34781 * 120.00228 * 359.72567 * 14 13 12 17 17 C 1.40078 * 119.99893 * 185.48475 * 16 14 13 18 18 C 1.38555 * 120.43519 * 17.71255 * 17 16 14 19 19 C 1.40264 * 118.28867 * 180.02562 * 18 17 16 20 20 C 1.47489 * 120.47931 * 179.97438 * 19 18 17 21 21 O 1.21509 * 119.99663 * 0.02562 * 20 19 18 22 22 O 1.34743 * 120.00280 * 180.02562 * 20 19 18 23 23 C 1.39591 * 119.04886 * 359.97438 * 19 18 17 24 24 N 1.31669 * 120.76720 * 359.97438 * 23 19 18 25 25 C 1.32320 * 121.88452 * 0.02562 * 24 23 19 26 26 O 1.35548 * 119.56376 * 179.97438 * 25 24 23 27 27 C 1.39052 * 119.94414 * 359.43942 * 13 12 11 28 28 H 0.97003 * 120.00068 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.98034 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.79796 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.82111 * 180.27896 * 12 11 10 32 32 H 0.96996 * 120.00061 * 5.48297 * 16 14 13 33 33 H 1.08002 * 120.85333 * 0.03919 * 18 17 16 34 34 H 0.96707 * 116.99801 * 179.97438 * 22 20 19 35 35 H 1.08003 * 119.61791 * 179.72613 * 23 19 18 36 36 H 0.96704 * 114.00123 * 269.99852 * 26 25 24 37 37 H 1.08000 * 120.20066 * 180.25580 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0703 -1.2220 -0.1945 9 6 1.3237 -2.4237 0.2527 10 6 1.7750 -3.6254 -0.3253 11 6 1.1065 -4.8035 -0.0772 12 6 -0.0072 -4.8174 0.7439 13 6 -0.4738 -3.6323 1.3224 14 6 -1.6682 -3.6545 2.1936 15 8 -2.0703 -2.6251 2.7002 16 7 -2.3111 -4.8160 2.4263 17 6 -3.5066 -4.8208 3.1563 18 6 -4.2278 -3.6505 3.3295 19 6 -5.4185 -3.7066 4.0689 20 6 -6.2239 -2.4899 4.2836 21 8 -5.8576 -1.4289 3.8182 22 8 -7.3658 -2.5547 4.9958 23 6 -5.8302 -4.9307 4.5986 24 7 -5.1160 -6.0207 4.4101 25 6 -3.9880 -6.0062 3.7185 26 8 -3.2896 -7.1562 3.5539 27 6 0.1899 -2.4343 1.0820 28 1 -0.4850 0.8401 0.0004 29 1 2.6457 -3.6232 -0.9644 30 1 1.4564 -5.7232 -0.5224 31 1 -0.5216 -5.7475 0.9356 32 1 -1.9459 -5.6487 2.0883 33 1 -3.8822 -2.7190 2.9060 34 1 -7.8594 -1.7310 5.1101 35 1 -6.7432 -4.9837 5.1731 36 1 -2.6352 -7.3215 4.2464 37 1 -0.1644 -1.5176 1.5298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:52 Heat of formation + Delta-G solvation = -100.546508 kcal Electronic energy + Delta-G solvation = -26487.234838 eV Core-core repulsion = 22387.948332 eV Total energy + Delta-G solvation = -4099.286506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31997 -40.08767 -39.27944 -37.34523 -37.20523 -36.23843 -34.93055 -33.81011 -32.22553 -30.85318 -29.65016 -29.30579 -25.48464 -25.12646 -24.42237 -22.66381 -21.65673 -21.07456 -19.95498 -19.15860 -18.42396 -18.29734 -17.59776 -16.89734 -16.47034 -16.02976 -15.83114 -15.68410 -15.19606 -14.84530 -14.66741 -14.20670 -13.90638 -13.45528 -13.43166 -13.29367 -13.01712 -12.81788 -12.62844 -12.15836 -11.81892 -11.74374 -11.33639 -11.17755 -11.14600 -10.96514 -10.85299 -10.59489 -10.26900 -9.95010 -9.83402 -9.80570 -9.34604 -9.13003 -8.29112 -7.79922 -7.62111 -6.85383 -4.53802 0.19070 0.97904 1.92944 2.31064 2.69048 2.69562 3.03752 3.04934 3.08241 3.09054 3.21514 3.44959 3.70376 3.86978 4.38235 4.52783 4.72193 4.77342 4.80635 5.03880 5.42758 5.43121 5.67530 5.90433 5.91941 6.06651 6.09947 6.26791 6.51972 6.55850 6.79389 6.85740 7.09417 7.16200 7.20968 7.40615 7.53354 7.54400 7.66950 7.72092 7.83508 8.02529 8.36672 8.42714 8.68585 8.71802 10.10113 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.003483 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.626141 B = 8037.656824 C =10032.354651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.072 3.928 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.202 4.202 11 C -0.097 4.097 12 C -0.214 4.214 13 C -0.134 4.134 14 C 0.564 3.436 15 O -0.516 6.516 16 N -0.662 5.662 17 C 0.100 3.900 18 C -0.032 4.032 19 C -0.167 4.167 20 C 0.533 3.467 21 O -0.497 6.497 22 O -0.513 6.513 23 C 0.148 3.852 24 N -0.485 5.485 25 C 0.303 3.697 26 O -0.475 6.475 27 C -0.079 4.079 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.420 0.580 33 H 0.190 0.810 34 H 0.416 0.584 35 H 0.176 0.824 36 H 0.404 0.596 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 -8.184 8.074 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.097 3.903 10 C -0.222 4.222 11 C -0.116 4.116 12 C -0.234 4.234 13 C -0.137 4.137 14 C 0.358 3.642 15 O -0.393 6.393 16 N -0.307 5.307 17 C -0.001 4.001 18 C -0.060 4.060 19 C -0.171 4.171 20 C 0.375 3.625 21 O -0.384 6.384 22 O -0.326 6.326 23 C -0.012 4.012 24 N -0.203 5.203 25 C 0.121 3.879 26 O -0.283 6.283 27 C -0.099 4.099 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.259 0.741 33 H 0.207 0.793 34 H 0.275 0.725 35 H 0.193 0.807 36 H 0.262 0.738 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.810 -8.217 7.997 15.090 hybrid contribution 0.699 1.497 -0.166 1.660 sum -9.111 -6.720 7.831 13.766 Atomic orbital electron populations 1.69733 1.07482 1.29901 1.34406 1.25948 0.94876 1.01529 0.92314 0.86228 0.80434 0.80373 0.79267 1.19395 1.19938 1.18413 1.19583 0.96398 0.90323 1.42692 0.89987 1.17602 0.91243 0.92642 0.88830 1.21216 1.03068 0.93342 1.04530 1.20463 0.95820 0.96904 0.98376 1.20359 1.01236 0.94982 1.06792 1.19271 0.96126 0.96112 1.02214 1.19201 0.83560 0.81649 0.79805 1.90637 1.66341 1.32694 1.49620 1.43616 1.21300 1.12374 1.53401 1.18799 0.89249 0.93667 0.98336 1.22451 0.89645 1.00691 0.93169 1.19983 0.97421 0.93306 1.06385 1.20431 0.78913 0.88212 0.74945 1.90982 1.69767 1.30773 1.46922 1.84522 1.35839 1.43635 1.68557 1.22795 0.97994 0.85341 0.95072 1.67214 1.06234 1.31037 1.15820 1.19008 0.90567 0.84481 0.93836 1.84728 1.53874 1.38181 1.51471 1.21657 0.95926 0.95610 0.96666 0.90326 0.88284 0.88531 0.89026 0.74085 0.79326 0.72489 0.80734 0.73785 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.44 10.99 55.55 0.61 -19.83 16 2 C 0.07 1.77 5.22 -17.34 -0.09 1.67 16 3 Si 0.91 18.38 29.58 -169.99 -5.03 13.36 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.65 9.05 -37.73 -0.34 -12.00 16 8 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 9 C 0.10 2.50 5.53 -106.87 -0.59 1.91 16 10 C -0.20 -4.52 9.78 -38.81 -0.38 -4.90 16 11 C -0.10 -1.93 10.01 -39.72 -0.40 -2.33 16 12 C -0.21 -4.14 9.55 -38.91 -0.37 -4.51 16 13 C -0.13 -2.93 5.87 -105.04 -0.62 -3.55 16 14 C 0.56 11.37 7.64 -12.33 -0.09 11.27 16 15 O -0.52 -11.78 13.19 5.30 0.07 -11.71 16 16 N -0.66 -10.39 5.29 -10.53 -0.06 -10.45 16 17 C 0.10 1.51 6.56 -83.41 -0.55 0.96 16 18 C -0.03 -0.52 8.45 -38.70 -0.33 -0.85 16 19 C -0.17 -2.25 5.89 -104.86 -0.62 -2.87 16 20 C 0.53 6.90 8.27 34.50 0.29 7.19 16 21 O -0.50 -8.38 17.20 -19.27 -0.33 -8.71 16 22 O -0.51 -4.32 12.69 -40.61 -0.52 -4.83 16 23 C 0.15 1.70 10.78 -17.12 -0.18 1.52 16 24 N -0.49 -6.21 10.36 -12.80 -0.13 -6.35 16 25 C 0.30 3.94 7.76 -16.78 -0.13 3.81 16 26 O -0.48 -5.02 12.89 -18.34 -0.24 -5.25 16 27 C -0.08 -1.98 8.19 -38.44 -0.31 -2.29 16 28 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 29 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 30 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.09 1.43 6.39 -52.49 -0.34 1.10 16 32 H 0.42 5.60 6.26 -40.82 -0.26 5.34 16 33 H 0.19 3.68 5.06 -52.49 -0.27 3.41 16 34 H 0.42 1.66 9.11 45.56 0.42 2.07 16 35 H 0.18 1.47 7.61 -52.48 -0.40 1.07 16 36 H 0.40 2.39 9.06 45.56 0.41 2.80 16 37 H 0.13 3.68 5.94 -52.49 -0.31 3.37 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -31.98 333.76 -6.44 -38.42 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -1.13 Total: 15.29 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -4.72 Total: -4.97 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.42 Total: -36.62 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.01 Total: -30.51 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.98 -6.44 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.129 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds