Wall clock time and date at job start Tue Mar 31 2020 14:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86799 * 120.00278 * 2 1 4 4 H 1.48496 * 109.47337 * 270.00357 * 3 2 1 5 5 H 1.48506 * 109.46824 * 30.00425 * 3 2 1 6 6 H 1.48501 * 109.47218 * 150.00116 * 3 2 1 7 7 C 1.39938 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 168.03512 * 7 2 1 9 9 C 1.41438 * 120.00480 * 348.04032 * 7 2 1 10 10 C 1.40780 * 120.17978 * 150.00055 * 9 7 2 11 11 C 1.37711 * 120.04368 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.41101 * 359.71985 * 11 10 9 13 13 C 1.39890 * 120.35758 * 0.56198 * 12 11 10 14 14 C 1.47849 * 120.02707 * 179.71604 * 13 12 11 15 15 O 1.21572 * 120.00005 * 179.72251 * 14 13 12 16 16 N 1.34781 * 120.00228 * 359.72567 * 14 13 12 17 17 C 1.40078 * 119.99893 * 185.48475 * 16 14 13 18 18 C 1.38555 * 120.43519 * 17.71255 * 17 16 14 19 19 C 1.40264 * 118.28867 * 180.02562 * 18 17 16 20 20 C 1.47489 * 120.47931 * 179.97438 * 19 18 17 21 21 O 1.21509 * 119.99663 * 0.02562 * 20 19 18 22 22 O 1.34743 * 120.00280 * 180.02562 * 20 19 18 23 23 C 1.39591 * 119.04886 * 359.97438 * 19 18 17 24 24 N 1.31669 * 120.76720 * 359.97438 * 23 19 18 25 25 C 1.32320 * 121.88452 * 0.02562 * 24 23 19 26 26 O 1.35548 * 119.56376 * 179.97438 * 25 24 23 27 27 C 1.39052 * 119.94414 * 359.43942 * 13 12 11 28 28 H 0.97003 * 120.00068 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.98034 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.79796 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.82111 * 180.27896 * 12 11 10 32 32 H 0.96996 * 120.00061 * 5.48297 * 16 14 13 33 33 H 1.08002 * 120.85333 * 0.03919 * 18 17 16 34 34 H 0.96707 * 116.99801 * 179.97438 * 22 20 19 35 35 H 1.08003 * 119.61791 * 179.72613 * 23 19 18 36 36 H 0.96704 * 114.00123 * 269.99852 * 26 25 24 37 37 H 1.08000 * 120.20066 * 180.25580 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0703 -1.2220 -0.1945 9 6 1.3237 -2.4237 0.2527 10 6 1.7750 -3.6254 -0.3253 11 6 1.1065 -4.8035 -0.0772 12 6 -0.0072 -4.8174 0.7439 13 6 -0.4738 -3.6323 1.3224 14 6 -1.6682 -3.6545 2.1936 15 8 -2.0703 -2.6251 2.7002 16 7 -2.3111 -4.8160 2.4263 17 6 -3.5066 -4.8208 3.1563 18 6 -4.2278 -3.6505 3.3295 19 6 -5.4185 -3.7066 4.0689 20 6 -6.2239 -2.4899 4.2836 21 8 -5.8576 -1.4289 3.8182 22 8 -7.3658 -2.5547 4.9958 23 6 -5.8302 -4.9307 4.5986 24 7 -5.1160 -6.0207 4.4101 25 6 -3.9880 -6.0062 3.7185 26 8 -3.2896 -7.1562 3.5539 27 6 0.1899 -2.4343 1.0820 28 1 -0.4850 0.8401 0.0004 29 1 2.6457 -3.6232 -0.9644 30 1 1.4564 -5.7232 -0.5224 31 1 -0.5216 -5.7475 0.9356 32 1 -1.9459 -5.6487 2.0883 33 1 -3.8822 -2.7190 2.9060 34 1 -7.8594 -1.7310 5.1101 35 1 -6.7432 -4.9837 5.1731 36 1 -2.6352 -7.3215 4.2464 37 1 -0.1644 -1.5176 1.5298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:51 Heat of formation + Delta-G solvation = -127.045229 kcal Electronic energy + Delta-G solvation = -26488.383908 eV Core-core repulsion = 22387.948332 eV Total energy + Delta-G solvation = -4100.435577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.47660 -41.23823 -40.56807 -38.97636 -38.18166 -37.17716 -36.32651 -35.57060 -33.39460 -32.33933 -31.37480 -30.66157 -27.27283 -26.17776 -25.73283 -24.04691 -22.94528 -22.59503 -21.45683 -20.21555 -19.68757 -19.46202 -18.96802 -18.08794 -17.65801 -17.38901 -17.05184 -16.80036 -16.67415 -16.46641 -16.11896 -15.75056 -15.12051 -15.03519 -14.63178 -14.47028 -14.37971 -14.23962 -14.04417 -13.55793 -13.06049 -12.99189 -12.81447 -12.68133 -12.62974 -12.41242 -12.23943 -12.11517 -11.90597 -11.55279 -11.29972 -11.12671 -10.92449 -10.51490 -9.67187 -9.39652 -9.33654 -8.65283 -6.43169 -0.84972 -0.22107 0.33305 0.96962 1.26608 1.35917 1.44199 1.50756 1.63533 1.90702 1.91596 2.18415 2.27281 2.55378 2.76409 3.36402 3.56200 3.61894 3.65698 3.81249 3.93954 4.20143 4.37051 4.51597 4.63985 4.83010 4.88602 4.92772 5.04989 5.12220 5.26836 5.32476 5.45920 5.47896 5.77128 5.84823 6.00246 6.18916 6.28808 6.35022 6.55570 6.58790 6.85918 6.88246 6.89680 6.94800 8.31762 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.003483 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.626141 B = 8037.656824 C =10032.354651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.029 3.971 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.499 4.499 8 H 0.085 0.915 9 C 0.067 3.933 10 C -0.204 4.204 11 C -0.097 4.097 12 C -0.187 4.187 13 C -0.142 4.142 14 C 0.563 3.437 15 O -0.554 6.554 16 N -0.641 5.641 17 C 0.077 3.923 18 C -0.051 4.051 19 C -0.178 4.178 20 C 0.542 3.458 21 O -0.548 6.548 22 O -0.490 6.490 23 C 0.176 3.824 24 N -0.490 5.490 25 C 0.332 3.668 26 O -0.472 6.472 27 C -0.117 4.117 28 H 0.285 0.715 29 H 0.112 0.888 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.433 0.567 33 H 0.149 0.851 34 H 0.438 0.562 35 H 0.214 0.786 36 H 0.428 0.572 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.136 -11.719 8.934 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.529 4.529 8 H 0.103 0.897 9 C 0.065 3.935 10 C -0.224 4.224 11 C -0.114 4.114 12 C -0.207 4.207 13 C -0.145 4.145 14 C 0.356 3.644 15 O -0.433 6.433 16 N -0.287 5.287 17 C -0.023 4.023 18 C -0.079 4.079 19 C -0.182 4.182 20 C 0.387 3.613 21 O -0.439 6.439 22 O -0.304 6.304 23 C 0.017 3.983 24 N -0.208 5.208 25 C 0.149 3.851 26 O -0.283 6.283 27 C -0.137 4.137 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.274 0.726 33 H 0.167 0.833 34 H 0.301 0.699 35 H 0.231 0.769 36 H 0.291 0.709 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.788 -11.828 8.893 18.313 hybrid contribution 0.828 2.267 -0.330 2.436 sum -9.960 -9.561 8.563 16.246 Atomic orbital electron populations 1.69854 1.09102 1.30419 1.36806 1.26797 0.95453 1.04805 0.91451 0.85199 0.79034 0.75909 0.79602 1.18308 1.20052 1.17699 1.19850 0.96709 0.91449 1.44873 0.89727 1.17928 0.91897 0.93987 0.89671 1.21531 1.03444 0.93412 1.04008 1.20966 0.95150 0.97644 0.97684 1.20916 1.00277 0.95613 1.03894 1.19547 0.96466 0.96110 1.02413 1.18988 0.83388 0.82425 0.79606 1.90654 1.67176 1.34455 1.51016 1.43160 1.21235 1.11226 1.53087 1.18841 0.89146 0.94327 1.00011 1.22178 0.91428 0.99846 0.94426 1.20027 0.96864 0.94601 1.06665 1.20372 0.79456 0.87230 0.74286 1.90978 1.71235 1.32472 1.49249 1.84459 1.34020 1.45115 1.66805 1.23356 0.98114 0.83830 0.93002 1.67434 1.06196 1.31150 1.16030 1.18954 0.90260 0.84120 0.91724 1.84676 1.54405 1.36479 1.52771 1.21425 0.97767 0.95799 0.98728 0.90508 0.87030 0.83905 0.84139 0.72562 0.83321 0.69913 0.76910 0.70912 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.69 10.99 21.82 0.24 -46.45 16 2 C 0.03 1.49 5.22 85.25 0.44 1.93 16 3 Si 0.98 39.69 29.58 68.60 2.03 41.72 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.50 -26.67 9.05 23.47 0.21 -26.46 16 8 H 0.08 4.25 7.87 -2.91 -0.02 4.23 16 9 C 0.07 3.54 5.53 -21.32 -0.12 3.42 16 10 C -0.20 -9.07 9.78 22.77 0.22 -8.84 16 11 C -0.10 -3.54 10.01 22.18 0.22 -3.32 16 12 C -0.19 -6.76 9.55 22.70 0.22 -6.55 16 13 C -0.14 -6.33 5.87 -20.14 -0.12 -6.45 16 14 C 0.56 23.37 7.64 86.79 0.66 24.04 16 15 O -0.55 -27.24 13.19 -3.94 -0.05 -27.29 16 16 N -0.64 -19.44 5.29 -305.49 -1.61 -21.06 16 17 C 0.08 2.22 6.56 38.26 0.25 2.47 16 18 C -0.05 -1.70 8.45 22.84 0.19 -1.51 16 19 C -0.18 -4.63 5.89 -20.02 -0.12 -4.75 16 20 C 0.54 13.81 8.27 70.26 0.58 14.39 16 21 O -0.55 -19.35 17.20 19.81 0.34 -19.01 16 22 O -0.49 -7.01 12.69 -56.54 -0.72 -7.72 16 23 C 0.18 3.46 10.78 85.04 0.92 4.38 16 24 N -0.49 -10.75 10.36 -307.32 -3.18 -13.94 16 25 C 0.33 7.61 7.76 84.99 0.66 8.27 16 26 O -0.47 -7.97 12.89 -88.54 -1.14 -9.11 16 27 C -0.12 -6.25 8.19 23.01 0.19 -6.06 16 28 H 0.28 14.83 8.30 -92.71 -0.77 14.06 16 29 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 30 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 31 H 0.14 3.66 6.39 -2.91 -0.02 3.65 16 32 H 0.43 10.20 6.26 -92.71 -0.58 9.62 16 33 H 0.15 6.33 5.06 -2.91 -0.01 6.31 16 34 H 0.44 2.42 9.11 -74.05 -0.67 1.74 16 35 H 0.21 2.52 7.61 -2.91 -0.02 2.50 16 36 H 0.43 3.08 9.06 -74.05 -0.67 2.41 16 37 H 0.10 5.87 5.94 -2.91 -0.02 5.86 16 Total: -1.00 -77.25 333.76 -0.40 -77.65 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -0.72 Total: 30.25 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 4.42 Total: -5.04 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -4.56 Total: -81.45 kcal Atomic # 8 Polarization: -61.56 SS G_CDS: -1.57 Total: -63.13 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -77.25 -0.40 -77.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.391 kcal (2) G-P(sol) polarization free energy of solvation -77.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds