Wall clock time and date at job start Tue Mar 31 2020 15:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86803 * 120.00035 * 2 1 4 4 H 1.48498 * 109.46816 * 240.00017 * 3 2 1 5 5 H 1.48501 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47064 * 119.99782 * 3 2 1 7 7 C 1.40040 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00194 * 194.34350 * 7 2 1 9 9 C 1.41545 * 119.99581 * 14.34998 * 7 2 1 10 10 C 1.41171 * 120.99288 * 200.85866 * 9 7 2 11 11 C 1.36590 * 119.13368 * 179.97438 * 10 9 7 12 12 N 1.32067 * 121.26368 * 359.97438 * 11 10 9 13 13 C 1.32509 * 122.22635 * 0.02562 * 12 11 10 14 14 N 1.39333 * 119.65136 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99993 * 6.09902 * 14 13 12 16 16 O 1.21779 * 120.00103 * 356.37076 * 15 14 13 17 17 C 1.41561 * 120.00226 * 176.37756 * 15 14 13 18 18 C 1.35573 * 119.99762 * 188.64019 * 17 15 14 19 19 C 1.41736 * 120.00207 * 29.63657 * 18 17 15 20 20 C 1.36458 * 125.67413 * 186.14339 * 19 18 17 21 21 C 1.41737 * 106.59035 * 180.26277 * 20 19 18 22 22 C 1.47365 * 126.76733 * 179.74322 * 21 20 19 23 23 O 1.21520 * 119.99862 * 359.97438 * 22 21 20 24 24 O 1.34748 * 120.00006 * 179.97438 * 22 21 20 25 25 C 1.37920 * 106.46214 * 359.58098 * 21 20 19 26 26 O 1.33581 * 108.39282 * 0.42398 * 25 21 20 27 27 C 1.38686 * 120.69724 * 0.27485 * 13 12 11 28 28 H 0.96997 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.43178 * 0.02562 * 10 9 7 30 30 H 1.08007 * 119.36654 * 179.97438 * 11 10 9 31 31 H 0.96996 * 120.00356 * 186.09614 * 14 13 12 32 32 H 1.07993 * 119.99786 * 8.63467 * 17 15 14 33 33 H 1.07995 * 119.99180 * 209.62887 * 18 17 15 34 34 H 1.08002 * 126.70424 * 0.02562 * 20 19 18 35 35 H 0.96699 * 117.00061 * 179.97438 * 24 22 21 36 36 H 1.08003 * 125.80004 * 180.15463 * 25 21 20 37 37 H 1.07994 * 120.66121 * 179.70952 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0077 -1.2128 0.0005 8 1 3.0624 -1.2273 0.2322 9 6 1.3330 -2.4196 -0.3027 10 6 1.8581 -3.6668 0.0993 11 6 1.1752 -4.8077 -0.2131 12 7 0.0370 -4.7639 -0.8816 13 6 -0.5026 -3.6226 -1.2841 14 7 -1.7064 -3.6389 -1.9856 15 6 -2.3779 -4.7965 -2.1450 16 8 -1.9008 -5.8387 -1.7337 17 6 -3.6377 -4.8009 -2.7906 18 6 -4.3919 -5.9275 -2.7972 19 6 -4.2982 -6.8494 -1.7248 20 6 -4.9091 -8.0683 -1.6675 21 6 -4.5481 -8.6438 -0.4236 22 6 -4.9687 -9.9572 0.0959 23 8 -5.7016 -10.6658 -0.5655 24 8 -4.5407 -10.3723 1.3043 25 6 -3.7225 -7.7340 0.2032 26 8 -3.5902 -6.6681 -0.5910 27 6 0.1207 -2.4124 -1.0189 28 1 -0.4850 0.8400 -0.0004 29 1 2.7871 -3.7181 0.6476 30 1 1.5737 -5.7640 0.0923 31 1 -2.0612 -2.8171 -2.3592 32 1 -3.9979 -3.9070 -3.2777 33 1 -5.0643 -6.1221 -3.6196 34 1 -5.5467 -8.5068 -2.4209 35 1 -4.8435 -11.2408 1.6027 36 1 -3.2647 -7.8599 1.1732 37 1 -0.3173 -1.4829 -1.3513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:12 Heat of formation + Delta-G solvation = -37.516517 kcal Electronic energy + Delta-G solvation = -26260.899740 eV Core-core repulsion = 22164.346420 eV Total energy + Delta-G solvation = -4096.553320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.73122 -40.01720 -39.65553 -37.93269 -36.22081 -34.58685 -33.96756 -33.71223 -33.11290 -30.54815 -29.63642 -28.34197 -26.03852 -24.70346 -24.38288 -21.97619 -21.67764 -21.18907 -20.32279 -19.35601 -17.94047 -17.86118 -17.70289 -16.45839 -16.22623 -16.09352 -15.73055 -15.42662 -15.23060 -14.64624 -14.32206 -14.21698 -14.18216 -13.65523 -13.41861 -13.16340 -12.81918 -12.69213 -12.60932 -12.28786 -12.24804 -11.79083 -11.46101 -11.21205 -10.91628 -10.88370 -10.41036 -10.32091 -10.15034 -9.93851 -9.72081 -9.43233 -9.36833 -8.02123 -7.99515 -7.71964 -7.01374 -6.79456 -4.64532 0.36663 1.15157 2.38966 2.72651 2.74773 2.81380 2.98202 3.01089 3.01276 3.03195 3.25058 3.81111 3.83700 3.88632 4.50524 4.63554 4.67348 4.86691 5.06157 5.31964 5.37275 5.58041 5.70104 5.79535 5.80933 6.01823 6.05887 6.23948 6.27388 6.57370 6.67946 6.81459 6.94259 6.98390 7.13517 7.40592 7.47072 7.73629 7.78352 7.95287 8.21367 8.42494 8.69399 8.73198 8.91427 9.71103 10.03131 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023155 B = 0.002586 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.963331 B =10824.002408 C =11439.722985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.451 4.451 8 H 0.081 0.919 9 C 0.140 3.860 10 C -0.285 4.285 11 C 0.118 3.882 12 N -0.553 5.553 13 C 0.339 3.661 14 N -0.653 5.653 15 C 0.521 3.479 16 O -0.468 6.468 17 C -0.201 4.201 18 C -0.011 4.011 19 C 0.009 3.991 20 C -0.123 4.123 21 C -0.248 4.248 22 C 0.560 3.440 23 O -0.520 6.520 24 O -0.514 6.514 25 C 0.083 3.917 26 O -0.110 6.110 27 C -0.249 4.249 28 H 0.282 0.718 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.407 0.593 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.414 0.586 36 H 0.218 0.782 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 -7.959 -2.171 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.131 3.869 10 C -0.309 4.309 11 C -0.036 4.036 12 N -0.273 5.273 13 C 0.113 3.887 14 N -0.299 5.299 15 C 0.309 3.691 16 O -0.341 6.341 17 C -0.222 4.222 18 C -0.031 4.031 19 C -0.040 4.040 20 C -0.142 4.142 21 C -0.250 4.250 22 C 0.405 3.595 23 O -0.411 6.411 24 O -0.326 6.326 25 C 0.007 3.993 26 O 0.000 6.000 27 C -0.275 4.275 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.242 0.758 32 H 0.157 0.843 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.273 0.727 36 H 0.235 0.765 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.954 -8.886 -2.353 14.300 hybrid contribution 0.396 1.349 0.250 1.428 sum -10.558 -7.537 -2.103 13.141 Atomic orbital electron populations 1.69747 1.07656 1.29352 1.34648 1.25984 0.94826 1.01558 0.91921 0.86272 0.80073 0.79745 0.80114 1.18725 1.20225 1.18863 1.19584 0.97028 0.90460 1.41120 0.90082 1.17578 0.90398 0.92227 0.86672 1.21637 1.04002 0.94009 1.11218 1.21454 0.90657 0.96672 0.94793 1.67242 1.13647 1.27086 1.19306 1.18216 0.86165 0.90818 0.93461 1.43377 1.21781 1.10605 1.54088 1.17185 0.86182 0.84625 0.81095 1.90925 1.68314 1.30199 1.44687 1.22387 0.95403 0.98928 1.05467 1.20561 0.98702 0.90722 0.93125 1.19421 0.98326 0.97095 0.89130 1.21818 1.02453 0.93129 0.96828 1.19495 1.10536 0.95838 0.99162 1.19769 0.76337 0.85124 0.78244 1.90883 1.35552 1.56003 1.58621 1.84568 1.71058 1.41646 1.35344 1.25299 0.94135 0.83812 0.96004 1.84433 1.53200 1.37762 1.24573 1.21757 1.01178 0.95778 1.08779 0.90691 0.88179 0.86187 0.75807 0.84264 0.82229 0.82004 0.72710 0.76544 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.04 10.61 55.55 0.59 -18.45 16 2 C 0.08 1.80 5.27 -17.34 -0.09 1.71 16 3 Si 0.91 17.64 29.58 -169.99 -5.03 12.61 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 5 H -0.28 -5.20 7.11 56.52 0.40 -4.79 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.45 -11.46 9.14 -37.65 -0.34 -11.80 16 8 H 0.08 1.97 7.89 -52.49 -0.41 1.55 16 9 C 0.14 3.64 5.64 -106.55 -0.60 3.04 16 10 C -0.28 -6.94 9.85 -39.06 -0.38 -7.32 16 11 C 0.12 2.81 11.10 -18.05 -0.20 2.61 16 12 N -0.55 -13.88 7.85 -12.77 -0.10 -13.98 16 13 C 0.34 8.10 7.41 -154.77 -1.15 6.95 16 14 N -0.65 -12.58 5.37 -14.11 -0.08 -12.66 16 15 C 0.52 9.55 6.98 -14.99 -0.10 9.45 16 16 O -0.47 -10.23 11.32 -19.62 -0.22 -10.45 16 17 C -0.20 -2.56 9.75 -39.27 -0.38 -2.95 16 18 C -0.01 -0.13 9.77 -39.20 -0.38 -0.51 16 19 C 0.01 0.13 6.01 -38.89 -0.23 -0.11 16 20 C -0.12 -1.55 10.64 -38.89 -0.41 -1.96 16 21 C -0.25 -3.23 6.16 -104.96 -0.65 -3.88 16 22 C 0.56 6.91 8.33 34.44 0.29 7.20 16 23 O -0.52 -7.67 17.72 -19.28 -0.34 -8.01 16 24 O -0.51 -4.64 13.27 -40.62 -0.54 -5.18 16 25 C 0.08 1.09 11.98 30.62 0.37 1.46 16 26 O -0.11 -1.77 7.18 -18.78 -0.13 -1.91 16 27 C -0.25 -6.26 8.66 -38.44 -0.33 -6.59 16 28 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16 29 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 31 H 0.41 6.38 8.65 -40.82 -0.35 6.03 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.41 1.75 9.11 45.56 0.42 2.17 16 36 H 0.22 2.21 8.06 -52.48 -0.42 1.79 16 37 H 0.14 3.36 5.90 -52.49 -0.31 3.05 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -34.97 339.12 -7.69 -42.66 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -2.33 Total: 12.95 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -4.61 Total: -2.70 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.41 Total: -45.09 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -1.24 Total: -25.54 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.97 -7.69 -42.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.146 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds