Wall clock time and date at job start Tue Mar 31 2020 15:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86803 * 120.00035 * 2 1 4 4 H 1.48498 * 109.46816 * 240.00017 * 3 2 1 5 5 H 1.48501 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47064 * 119.99782 * 3 2 1 7 7 C 1.40040 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00194 * 194.34350 * 7 2 1 9 9 C 1.41545 * 119.99581 * 14.34998 * 7 2 1 10 10 C 1.41171 * 120.99288 * 200.85866 * 9 7 2 11 11 C 1.36590 * 119.13368 * 179.97438 * 10 9 7 12 12 N 1.32067 * 121.26368 * 359.97438 * 11 10 9 13 13 C 1.32509 * 122.22635 * 0.02562 * 12 11 10 14 14 N 1.39333 * 119.65136 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99993 * 6.09902 * 14 13 12 16 16 O 1.21779 * 120.00103 * 356.37076 * 15 14 13 17 17 C 1.41561 * 120.00226 * 176.37756 * 15 14 13 18 18 C 1.35573 * 119.99762 * 188.64019 * 17 15 14 19 19 C 1.41736 * 120.00207 * 29.63657 * 18 17 15 20 20 C 1.36458 * 125.67413 * 186.14339 * 19 18 17 21 21 C 1.41737 * 106.59035 * 180.26277 * 20 19 18 22 22 C 1.47365 * 126.76733 * 179.74322 * 21 20 19 23 23 O 1.21520 * 119.99862 * 359.97438 * 22 21 20 24 24 O 1.34748 * 120.00006 * 179.97438 * 22 21 20 25 25 C 1.37920 * 106.46214 * 359.58098 * 21 20 19 26 26 O 1.33581 * 108.39282 * 0.42398 * 25 21 20 27 27 C 1.38686 * 120.69724 * 0.27485 * 13 12 11 28 28 H 0.96997 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.43178 * 0.02562 * 10 9 7 30 30 H 1.08007 * 119.36654 * 179.97438 * 11 10 9 31 31 H 0.96996 * 120.00356 * 186.09614 * 14 13 12 32 32 H 1.07993 * 119.99786 * 8.63467 * 17 15 14 33 33 H 1.07995 * 119.99180 * 209.62887 * 18 17 15 34 34 H 1.08002 * 126.70424 * 0.02562 * 20 19 18 35 35 H 0.96699 * 117.00061 * 179.97438 * 24 22 21 36 36 H 1.08003 * 125.80004 * 180.15463 * 25 21 20 37 37 H 1.07994 * 120.66121 * 179.70952 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0077 -1.2128 0.0005 8 1 3.0624 -1.2273 0.2322 9 6 1.3330 -2.4196 -0.3027 10 6 1.8581 -3.6668 0.0993 11 6 1.1752 -4.8077 -0.2131 12 7 0.0370 -4.7639 -0.8816 13 6 -0.5026 -3.6226 -1.2841 14 7 -1.7064 -3.6389 -1.9856 15 6 -2.3779 -4.7965 -2.1450 16 8 -1.9008 -5.8387 -1.7337 17 6 -3.6377 -4.8009 -2.7906 18 6 -4.3919 -5.9275 -2.7972 19 6 -4.2982 -6.8494 -1.7248 20 6 -4.9091 -8.0683 -1.6675 21 6 -4.5481 -8.6438 -0.4236 22 6 -4.9687 -9.9572 0.0959 23 8 -5.7016 -10.6658 -0.5655 24 8 -4.5407 -10.3723 1.3043 25 6 -3.7225 -7.7340 0.2032 26 8 -3.5902 -6.6681 -0.5910 27 6 0.1207 -2.4124 -1.0189 28 1 -0.4850 0.8400 -0.0004 29 1 2.7871 -3.7181 0.6476 30 1 1.5737 -5.7640 0.0923 31 1 -2.0612 -2.8171 -2.3592 32 1 -3.9979 -3.9070 -3.2777 33 1 -5.0643 -6.1221 -3.6196 34 1 -5.5467 -8.5068 -2.4209 35 1 -4.8435 -11.2408 1.6027 36 1 -3.2647 -7.8599 1.1732 37 1 -0.3173 -1.4829 -1.3513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:12 Heat of formation + Delta-G solvation = -60.121007 kcal Electronic energy + Delta-G solvation = -26261.879944 eV Core-core repulsion = 22164.346420 eV Total energy + Delta-G solvation = -4097.533525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.76200 -41.23923 -40.90212 -39.61147 -37.10736 -36.19728 -35.50355 -35.02599 -34.15723 -32.41256 -30.99969 -29.76216 -27.91518 -25.69169 -25.58792 -23.78515 -23.04243 -22.30682 -21.67175 -20.54051 -19.45122 -19.13027 -18.81446 -17.65978 -17.55867 -17.30222 -16.99650 -16.76343 -16.40619 -16.02368 -15.98310 -15.83461 -15.45002 -14.99669 -14.70754 -14.35021 -14.27233 -14.17595 -13.97394 -13.67246 -13.23328 -13.14845 -12.87596 -12.66400 -12.65735 -12.01611 -11.92917 -11.89167 -11.54021 -11.32326 -11.11037 -10.95096 -10.91372 -9.91906 -9.56105 -9.03851 -8.76003 -8.57664 -6.56376 -0.63396 0.16825 0.87106 1.03227 1.41203 1.45922 1.52472 1.61977 1.83360 2.02108 2.17086 2.19961 2.40774 2.53506 2.86929 3.54691 3.72159 3.80799 3.90290 3.98671 4.29520 4.41840 4.54432 4.67522 4.75677 4.85751 4.91010 4.93285 5.00669 5.10540 5.14321 5.26828 5.34538 5.50605 5.53628 5.70652 5.94713 5.99899 6.20219 6.52344 6.68606 6.82514 6.84851 6.94154 7.43052 7.90900 8.26360 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023155 B = 0.002586 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.963331 B =10824.002408 C =11439.722985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.038 3.962 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.482 4.482 8 H 0.082 0.918 9 C 0.110 3.890 10 C -0.301 4.301 11 C 0.113 3.887 12 N -0.574 5.574 13 C 0.338 3.662 14 N -0.652 5.652 15 C 0.515 3.485 16 O -0.511 6.511 17 C -0.225 4.225 18 C 0.018 3.982 19 C -0.020 4.020 20 C -0.113 4.113 21 C -0.261 4.261 22 C 0.567 3.433 23 O -0.548 6.548 24 O -0.505 6.505 25 C 0.077 3.923 26 O -0.142 6.142 27 C -0.270 4.270 28 H 0.292 0.708 29 H 0.112 0.888 30 H 0.145 0.855 31 H 0.421 0.579 32 H 0.180 0.820 33 H 0.212 0.788 34 H 0.186 0.814 35 H 0.436 0.564 36 H 0.236 0.764 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 -7.615 -2.812 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.180 4.180 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.512 4.512 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.325 4.325 11 C -0.041 4.041 12 N -0.295 5.295 13 C 0.111 3.889 14 N -0.298 5.298 15 C 0.307 3.693 16 O -0.386 6.386 17 C -0.245 4.245 18 C -0.001 4.001 19 C -0.068 4.068 20 C -0.132 4.132 21 C -0.263 4.263 22 C 0.414 3.586 23 O -0.440 6.440 24 O -0.320 6.320 25 C 0.003 3.997 26 O -0.034 6.034 27 C -0.296 4.296 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.163 0.837 31 H 0.259 0.741 32 H 0.197 0.803 33 H 0.229 0.771 34 H 0.203 0.797 35 H 0.298 0.702 36 H 0.253 0.747 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.231 -8.555 -2.991 15.223 hybrid contribution 0.701 1.073 0.544 1.392 sum -11.530 -7.482 -2.447 13.961 Atomic orbital electron populations 1.69782 1.08965 1.30929 1.33878 1.26848 0.95649 1.04615 0.90841 0.85147 0.78729 0.75153 0.80067 1.18438 1.18855 1.18493 1.19877 0.97382 0.91466 1.42477 0.89951 1.18020 0.91266 0.93263 0.87283 1.21807 1.04780 0.93902 1.12029 1.21886 0.90395 0.97633 0.94139 1.67384 1.14266 1.27608 1.20207 1.18483 0.87286 0.90201 0.92916 1.43456 1.20494 1.12112 1.53775 1.18063 0.87715 0.83443 0.80118 1.90895 1.69640 1.31398 1.46713 1.22351 0.93864 1.01403 1.06918 1.21293 0.97739 0.88528 0.92555 1.20065 0.98804 0.98436 0.89508 1.22162 1.01633 0.92506 0.96908 1.19744 1.10625 0.96318 0.99633 1.19627 0.75707 0.84602 0.78693 1.90873 1.36879 1.56683 1.59597 1.84524 1.70471 1.43258 1.33701 1.25767 0.94037 0.83344 0.96570 1.84414 1.54222 1.38966 1.25776 1.21752 1.01709 0.96112 1.10023 0.89654 0.86983 0.83741 0.74141 0.80262 0.77119 0.79706 0.70168 0.74741 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.32 10.61 21.84 0.23 -39.09 16 2 C 0.04 1.78 5.27 85.29 0.45 2.23 16 3 Si 0.99 35.62 29.58 68.60 2.03 37.65 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 7 C -0.48 -24.99 9.14 23.52 0.22 -24.78 16 8 H 0.08 4.09 7.89 -2.91 -0.02 4.06 16 9 C 0.11 5.91 5.64 -21.11 -0.12 5.80 16 10 C -0.30 -15.11 9.85 22.60 0.22 -14.89 16 11 C 0.11 5.48 11.10 84.27 0.94 6.42 16 12 N -0.57 -29.53 7.85 -194.32 -1.53 -31.06 16 13 C 0.34 16.59 7.41 132.81 0.98 17.58 16 14 N -0.65 -25.39 5.37 -316.75 -1.70 -27.09 16 15 C 0.51 18.82 6.98 85.06 0.59 19.41 16 16 O -0.51 -22.61 11.32 19.05 0.22 -22.39 16 17 C -0.23 -5.29 9.75 22.47 0.22 -5.07 16 18 C 0.02 0.35 9.77 22.52 0.22 0.57 16 19 C -0.02 -0.52 6.01 22.72 0.14 -0.38 16 20 C -0.11 -2.64 10.64 22.72 0.24 -2.40 16 21 C -0.26 -6.53 6.16 -20.09 -0.12 -6.65 16 22 C 0.57 13.26 8.33 70.22 0.59 13.84 16 23 O -0.55 -15.43 17.72 19.77 0.35 -15.08 16 24 O -0.51 -8.24 13.27 -56.58 -0.75 -8.99 16 25 C 0.08 2.03 11.98 67.74 0.81 2.84 16 26 O -0.14 -4.60 7.18 22.06 0.16 -4.44 16 27 C -0.27 -14.01 8.66 23.01 0.20 -13.81 16 28 H 0.29 12.65 8.29 -92.71 -0.77 11.88 16 29 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 30 H 0.15 6.08 8.06 -2.91 -0.02 6.05 16 31 H 0.42 13.23 8.65 -92.71 -0.80 12.43 16 32 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.44 2.79 9.11 -74.06 -0.67 2.11 16 36 H 0.24 4.77 8.06 -2.91 -0.02 4.74 16 37 H 0.13 6.74 5.90 -2.91 -0.02 6.73 16 Total: -1.00 -78.41 339.12 4.27 -74.14 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: -0.31 Total: 35.64 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.57 Total: 0.71 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -3.00 Total: -97.23 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.03 Total: -50.91 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 2.03 Total: 37.65 kcal Total: -78.41 4.27 -74.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.017 kcal (2) G-P(sol) polarization free energy of solvation -78.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds