Wall clock time and date at job start Tue Mar 31 2020 16:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46782 * 2 1 4 4 C 1.53004 * 109.46718 * 119.99475 * 2 1 3 5 5 S 1.81397 * 109.47223 * 294.57578 * 4 2 1 6 6 O 1.42094 * 110.54499 * 290.01500 * 5 4 2 7 7 O 1.42106 * 110.54119 * 66.76742 * 5 4 2 8 8 N 1.65601 * 104.44950 * 178.38755 * 5 4 2 9 9 C 1.38825 * 119.99391 * 62.57720 * 8 5 4 10 10 C 1.39793 * 119.59111 * 2.23228 * 9 8 5 11 11 C 1.38592 * 119.49242 * 180.02562 * 10 9 8 12 12 C 1.38382 * 118.68519 * 359.97438 * 11 10 9 13 13 C 1.40558 * 119.14609 * 0.02562 * 12 11 10 14 14 C 1.41312 * 119.78395 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99967 * 7.30023 * 14 13 12 16 16 C 1.40030 * 120.00228 * 187.29706 * 14 13 12 17 17 N 1.30744 * 119.99738 * 7.26914 * 16 14 13 18 18 Si 1.86796 * 120.00006 * 187.26952 * 16 14 13 19 19 H 1.48503 * 109.47271 * 90.00051 * 18 16 14 20 20 H 1.48500 * 109.46919 * 209.99834 * 18 16 14 21 21 H 1.48497 * 109.47264 * 329.99820 * 18 16 14 22 22 N 1.31960 * 119.58104 * 181.95967 * 9 8 5 23 23 C 1.50695 * 109.47589 * 239.99401 * 2 1 3 24 24 O 1.20824 * 120.00279 * 240.00138 * 23 2 1 25 25 O 1.34232 * 119.99770 * 60.00178 * 23 2 1 26 26 H 1.08993 * 109.47321 * 300.00333 * 1 2 3 27 27 H 1.09003 * 109.46992 * 60.00810 * 1 2 3 28 28 H 1.09006 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47286 * 172.86277 * 3 2 1 30 30 H 1.09004 * 109.46960 * 292.85576 * 3 2 1 31 31 H 1.08993 * 109.47624 * 52.85993 * 3 2 1 32 32 H 1.09004 * 109.47197 * 54.57713 * 4 2 1 33 33 H 1.08996 * 109.46916 * 174.57602 * 4 2 1 34 34 H 0.96995 * 120.00217 * 242.56862 * 8 5 4 35 35 H 1.08003 * 120.24782 * 359.97374 * 10 9 8 36 36 H 1.08004 * 120.65740 * 180.02562 * 11 10 9 37 37 H 1.07996 * 120.42903 * 179.97438 * 12 11 10 38 38 H 0.97003 * 119.99959 * 185.01424 * 17 16 14 39 39 H 0.96698 * 117.00169 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 16 1.5708 0.2223 2.7260 6 8 2.3112 1.4328 2.8003 7 8 0.1599 0.2149 2.8950 8 7 2.1385 -0.6820 3.9918 9 6 3.5012 -0.9110 4.1250 10 6 4.3904 -0.3354 3.2127 11 6 5.7504 -0.5658 3.3473 12 6 6.1889 -1.3642 4.3890 13 6 5.2455 -1.9145 5.2737 14 6 5.6784 -2.7322 6.3418 15 1 6.7333 -2.8375 6.5481 16 6 4.7397 -3.4059 7.1329 17 7 3.4755 -3.3944 6.7996 18 14 5.2936 -4.3211 8.6642 19 1 5.2502 -3.4043 9.8317 20 1 4.3893 -5.4738 8.9062 21 1 6.6816 -4.8126 8.4722 22 7 3.9414 -1.6650 5.1145 23 6 2.0325 -0.7105 -1.2303 24 8 2.7271 -1.6928 -1.1194 25 8 1.7082 -0.2520 -2.4495 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1225 1.4452 0.1277 30 1 1.7847 1.9181 -0.9470 31 1 1.5761 1.9919 0.8191 32 1 1.5994 -1.7170 1.2993 33 1 3.1256 -0.8061 1.2022 34 1 1.5189 -1.0516 4.6401 35 1 4.0201 0.2834 2.4087 36 1 6.4541 -0.1301 2.6534 37 1 7.2424 -1.5626 4.5201 38 1 2.8159 -3.7985 7.3849 39 1 2.0543 -0.7407 -3.2087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603659476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:33 Heat of formation + Delta-G solvation = -126.204215 kcal Electronic energy + Delta-G solvation = -26649.688307 eV Core-core repulsion = 22684.733151 eV Total energy + Delta-G solvation = -3964.955156 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75959 -38.63067 -37.01509 -36.83553 -36.21607 -35.72674 -34.78292 -33.27177 -30.64884 -28.95950 -28.07637 -27.68674 -25.65221 -24.62934 -21.86416 -21.73060 -20.41279 -19.07731 -18.08946 -17.96629 -17.26804 -17.03397 -16.29567 -16.07818 -15.76740 -15.50733 -14.96169 -14.60667 -14.37439 -14.02844 -13.92135 -13.79783 -13.07755 -13.04567 -12.92687 -12.68149 -12.18802 -12.14067 -11.94683 -11.90477 -11.75996 -11.58380 -11.55509 -11.43695 -11.42405 -11.13729 -10.95839 -10.80976 -10.53350 -10.51799 -10.31917 -10.08990 -9.34369 -8.26620 -7.83198 -7.33303 -6.60350 -4.65852 0.29645 1.99158 2.60593 2.68010 2.85968 2.94645 3.03975 3.06684 3.11738 3.71967 3.86881 4.08114 4.22104 4.44137 4.50262 4.63522 4.96800 5.14283 5.33039 5.39199 5.45152 5.47842 5.55348 5.73446 5.77758 5.92634 5.94304 6.04026 6.25580 6.31453 6.46100 6.65059 7.01362 7.01815 7.34075 7.54767 7.59472 7.67380 7.93956 8.10509 8.54188 8.77691 9.88467 10.16629 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.003640 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.556149 B = 7690.232925 C = 8056.429985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.032 4.032 3 C -0.176 4.176 4 C -0.627 4.627 5 S 2.628 3.372 6 O -0.937 6.937 7 O -0.958 6.958 8 N -1.032 6.032 9 C 0.389 3.611 10 C -0.372 4.372 11 C -0.023 4.023 12 C -0.295 4.295 13 C 0.284 3.716 14 C -0.425 4.425 15 H 0.089 0.911 16 C 0.071 3.929 17 N -0.716 5.716 18 Si 0.910 3.090 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.260 1.260 22 N -0.507 5.507 23 C 0.495 3.505 24 O -0.500 6.500 25 O -0.512 6.512 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.143 0.857 33 H 0.158 0.842 34 H 0.426 0.574 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.276 0.724 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 4.595 -12.554 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.034 4.034 3 C -0.233 4.233 4 C -0.755 4.755 5 S 2.719 3.281 6 O -0.927 6.927 7 O -0.948 6.948 8 N -0.782 5.782 9 C 0.149 3.851 10 C -0.398 4.398 11 C -0.047 4.047 12 C -0.318 4.318 13 C 0.159 3.841 14 C -0.456 4.456 15 H 0.107 0.893 16 C -0.155 4.155 17 N -0.337 5.337 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.184 1.184 22 N -0.226 5.226 23 C 0.335 3.665 24 O -0.386 6.386 25 O -0.324 6.324 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.262 0.738 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -6.790 4.897 -11.601 14.306 hybrid contribution 1.093 -1.278 -0.406 1.730 sum -5.697 3.619 -12.007 13.774 Atomic orbital electron populations 1.22395 0.90350 1.04774 1.05722 1.20071 0.98363 0.96331 0.88681 1.22391 1.03878 0.91813 1.05227 1.30891 1.14943 1.15049 1.14603 1.04632 0.73515 0.74940 0.75054 1.93640 1.72691 1.41362 1.85012 1.93572 1.29383 1.86907 1.84919 1.53175 1.13424 1.69761 1.41866 1.18014 0.81808 0.92373 0.92862 1.20871 0.94897 1.16440 1.07613 1.20567 0.93766 0.94613 0.95751 1.21672 0.99311 1.09662 1.01165 1.18243 0.85562 0.89361 0.90929 1.19674 0.94676 1.21243 1.10013 0.89317 1.26078 0.94702 0.95669 0.99039 1.70017 1.01688 1.29016 1.32992 0.86285 0.79880 0.79260 0.81233 1.19262 1.20139 1.18416 1.68115 1.16941 1.17841 1.19747 1.22972 0.76934 0.82250 0.84368 1.90763 1.35065 1.25734 1.87068 1.84493 1.72313 1.59028 1.16613 0.88848 0.89722 0.90752 0.89899 0.89364 0.89945 0.83900 0.82399 0.73778 0.87804 0.87804 0.87834 0.91234 0.73061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.10 37.16 0.30 -1.52 16 2 C -0.03 -0.38 0.73 -155.66 -0.11 -0.50 16 3 C -0.18 -1.95 7.45 37.16 0.28 -1.67 16 4 C -0.63 -9.00 3.96 37.16 0.15 -8.86 16 5 S 2.63 43.42 3.93 -107.50 -0.42 42.99 16 6 O -0.94 -17.32 13.67 -57.54 -0.79 -18.11 16 7 O -0.96 -16.11 15.73 -57.54 -0.90 -17.01 16 8 N -1.03 -20.34 5.76 31.15 0.18 -20.16 16 9 C 0.39 9.16 7.48 -155.32 -1.16 8.00 16 10 C -0.37 -8.21 7.72 -38.87 -0.30 -8.51 16 11 C -0.02 -0.50 10.15 -39.40 -0.40 -0.90 16 12 C -0.30 -7.03 9.83 -38.65 -0.38 -7.41 16 13 C 0.28 7.55 6.52 -85.00 -0.55 7.00 16 14 C -0.43 -10.94 9.13 -37.74 -0.34 -11.28 16 15 H 0.09 2.12 7.86 -52.48 -0.41 1.71 16 16 C 0.07 1.74 5.47 -17.34 -0.09 1.65 16 17 N -0.72 -18.23 11.56 55.55 0.64 -17.59 16 18 Si 0.91 17.93 29.57 -169.99 -5.03 12.90 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 N -0.51 -13.46 8.00 -10.33 -0.08 -13.54 16 23 C 0.49 5.97 6.92 36.00 0.25 6.22 16 24 O -0.50 -7.74 16.67 -18.75 -0.31 -8.05 16 25 O -0.51 -4.32 13.10 -39.26 -0.51 -4.84 16 26 H 0.09 1.04 5.55 -51.93 -0.29 0.76 16 27 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 0.75 7.94 -51.93 -0.41 0.34 16 31 H 0.08 0.94 6.04 -51.93 -0.31 0.63 16 32 H 0.14 1.90 8.14 -51.92 -0.42 1.48 16 33 H 0.16 2.44 5.69 -51.93 -0.30 2.15 16 34 H 0.43 8.02 8.91 -34.47 -0.31 7.72 16 35 H 0.10 2.02 4.32 -52.48 -0.23 1.79 16 36 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 37 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 39 H 0.41 1.74 9.10 45.56 0.41 2.15 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -33.36 335.15 -8.06 -41.43 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -3.51 Total: 14.72 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -2.38 Total: -17.79 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.74 Total: -51.29 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -2.52 Total: -48.01 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 16 Polarization: 43.42 SS G_CDS: -0.42 Total: 42.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.36 -8.06 -41.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603659476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.778 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds