Wall clock time and date at job start Tue Mar 31 2020 16:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46782 * 2 1 4 4 C 1.53004 * 109.46718 * 119.99475 * 2 1 3 5 5 S 1.81397 * 109.47223 * 294.57578 * 4 2 1 6 6 O 1.42094 * 110.54499 * 290.01500 * 5 4 2 7 7 O 1.42106 * 110.54119 * 66.76742 * 5 4 2 8 8 N 1.65601 * 104.44950 * 178.38755 * 5 4 2 9 9 C 1.38825 * 119.99391 * 62.57720 * 8 5 4 10 10 C 1.39793 * 119.59111 * 2.23228 * 9 8 5 11 11 C 1.38592 * 119.49242 * 180.02562 * 10 9 8 12 12 C 1.38382 * 118.68519 * 359.97438 * 11 10 9 13 13 C 1.40558 * 119.14609 * 0.02562 * 12 11 10 14 14 C 1.41312 * 119.78395 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99967 * 7.30023 * 14 13 12 16 16 C 1.40030 * 120.00228 * 187.29706 * 14 13 12 17 17 N 1.30744 * 119.99738 * 7.26914 * 16 14 13 18 18 Si 1.86796 * 120.00006 * 187.26952 * 16 14 13 19 19 H 1.48503 * 109.47271 * 90.00051 * 18 16 14 20 20 H 1.48500 * 109.46919 * 209.99834 * 18 16 14 21 21 H 1.48497 * 109.47264 * 329.99820 * 18 16 14 22 22 N 1.31960 * 119.58104 * 181.95967 * 9 8 5 23 23 C 1.50695 * 109.47589 * 239.99401 * 2 1 3 24 24 O 1.20824 * 120.00279 * 240.00138 * 23 2 1 25 25 O 1.34232 * 119.99770 * 60.00178 * 23 2 1 26 26 H 1.08993 * 109.47321 * 300.00333 * 1 2 3 27 27 H 1.09003 * 109.46992 * 60.00810 * 1 2 3 28 28 H 1.09006 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47286 * 172.86277 * 3 2 1 30 30 H 1.09004 * 109.46960 * 292.85576 * 3 2 1 31 31 H 1.08993 * 109.47624 * 52.85993 * 3 2 1 32 32 H 1.09004 * 109.47197 * 54.57713 * 4 2 1 33 33 H 1.08996 * 109.46916 * 174.57602 * 4 2 1 34 34 H 0.96995 * 120.00217 * 242.56862 * 8 5 4 35 35 H 1.08003 * 120.24782 * 359.97374 * 10 9 8 36 36 H 1.08004 * 120.65740 * 180.02562 * 11 10 9 37 37 H 1.07996 * 120.42903 * 179.97438 * 12 11 10 38 38 H 0.97003 * 119.99959 * 185.01424 * 17 16 14 39 39 H 0.96698 * 117.00169 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 16 1.5708 0.2223 2.7260 6 8 2.3112 1.4328 2.8003 7 8 0.1599 0.2149 2.8950 8 7 2.1385 -0.6820 3.9918 9 6 3.5012 -0.9110 4.1250 10 6 4.3904 -0.3354 3.2127 11 6 5.7504 -0.5658 3.3473 12 6 6.1889 -1.3642 4.3890 13 6 5.2455 -1.9145 5.2737 14 6 5.6784 -2.7322 6.3418 15 1 6.7333 -2.8375 6.5481 16 6 4.7397 -3.4059 7.1329 17 7 3.4755 -3.3944 6.7996 18 14 5.2936 -4.3211 8.6642 19 1 5.2502 -3.4043 9.8317 20 1 4.3893 -5.4738 8.9062 21 1 6.6816 -4.8126 8.4722 22 7 3.9414 -1.6650 5.1145 23 6 2.0325 -0.7105 -1.2303 24 8 2.7271 -1.6928 -1.1194 25 8 1.7082 -0.2520 -2.4495 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1225 1.4452 0.1277 30 1 1.7847 1.9181 -0.9470 31 1 1.5761 1.9919 0.8191 32 1 1.5994 -1.7170 1.2993 33 1 3.1256 -0.8061 1.2022 34 1 1.5189 -1.0516 4.6401 35 1 4.0201 0.2834 2.4087 36 1 6.4541 -0.1301 2.6534 37 1 7.2424 -1.5626 4.5201 38 1 2.8159 -3.7985 7.3849 39 1 2.0543 -0.7407 -3.2087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603659476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:33 Heat of formation + Delta-G solvation = -150.534264 kcal Electronic energy + Delta-G solvation = -26650.743337 eV Core-core repulsion = 22684.733151 eV Total energy + Delta-G solvation = -3966.010186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68334 -40.40785 -38.42522 -37.78669 -37.24804 -36.96369 -36.46994 -35.03698 -32.46343 -30.75626 -29.20838 -28.51646 -27.45234 -25.54265 -23.64890 -23.44885 -21.41939 -20.51925 -19.53812 -18.94575 -18.84879 -18.52261 -17.53068 -17.27172 -17.01165 -16.76963 -16.64748 -16.14830 -15.78186 -15.28772 -15.08337 -14.76415 -14.71548 -14.69686 -14.06587 -13.88351 -13.81627 -13.35970 -13.28297 -13.08467 -13.07244 -12.78343 -12.72320 -12.66283 -12.60861 -12.48340 -12.38897 -12.27987 -12.10396 -11.97518 -11.78422 -11.42625 -11.10222 -10.10695 -9.68328 -9.13393 -8.40764 -6.56071 -1.04053 0.81512 1.07079 1.13730 1.37019 1.42481 1.53437 1.56149 1.92130 2.22371 2.46165 2.77516 2.97821 3.02271 3.43833 3.55946 3.82665 3.90779 4.05470 4.16118 4.26235 4.45622 4.50514 4.58668 4.67170 4.67866 4.72784 4.78556 4.87813 5.10801 5.14651 5.20073 5.29789 5.51984 5.55704 5.77950 5.86055 6.13210 6.25925 6.70191 6.90282 6.91440 8.04070 8.38869 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.003640 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.556149 B = 7690.232925 C = 8056.429985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.036 4.036 3 C -0.182 4.182 4 C -0.616 4.616 5 S 2.637 3.363 6 O -0.957 6.957 7 O -0.960 6.960 8 N -1.037 6.037 9 C 0.377 3.623 10 C -0.374 4.374 11 C -0.023 4.023 12 C -0.314 4.314 13 C 0.251 3.749 14 C -0.459 4.459 15 H 0.096 0.904 16 C 0.028 3.972 17 N -0.753 5.753 18 Si 0.988 3.012 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.253 1.253 22 N -0.541 5.541 23 C 0.506 3.494 24 O -0.540 6.540 25 O -0.497 6.497 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.425 0.575 35 H 0.129 0.871 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.283 0.717 39 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 4.953 -14.060 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.039 4.039 3 C -0.239 4.239 4 C -0.746 4.746 5 S 2.731 3.269 6 O -0.947 6.947 7 O -0.951 6.951 8 N -0.785 5.785 9 C 0.137 3.863 10 C -0.400 4.400 11 C -0.047 4.047 12 C -0.337 4.337 13 C 0.125 3.875 14 C -0.490 4.490 15 H 0.114 0.886 16 C -0.195 4.195 17 N -0.375 5.375 18 Si 0.808 3.192 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.176 1.176 22 N -0.261 5.261 23 C 0.347 3.653 24 O -0.430 6.430 25 O -0.310 6.310 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.261 0.739 35 H 0.147 0.853 36 H 0.160 0.840 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -6.971 5.296 -13.128 15.780 hybrid contribution 1.067 -1.287 -0.153 1.678 sum -5.905 4.010 -13.281 15.077 Atomic orbital electron populations 1.22471 0.88935 1.05511 1.06648 1.20151 0.99524 0.96525 0.87675 1.22488 1.03542 0.91212 1.06668 1.30727 1.14429 1.15257 1.14205 1.04381 0.73098 0.74377 0.75012 1.93607 1.73029 1.42592 1.85511 1.93568 1.29407 1.86915 1.85201 1.53356 1.12170 1.69699 1.43287 1.18368 0.83369 0.91962 0.92614 1.21263 0.95079 1.15938 1.07673 1.21035 0.94478 0.93603 0.95598 1.21878 0.99731 1.10412 1.01632 1.18742 0.86365 0.90316 0.92050 1.20048 0.95501 1.22393 1.11090 0.88603 1.26982 0.94490 0.95986 1.02025 1.70100 1.02882 1.30071 1.34448 0.85116 0.79648 0.77765 0.76673 1.18993 1.19425 1.17592 1.68089 1.17422 1.19308 1.21313 1.22787 0.75946 0.81320 0.85204 1.90764 1.37000 1.27501 1.87723 1.84432 1.71667 1.58744 1.16187 0.89799 0.86952 0.90198 0.90374 0.86440 0.90546 0.83010 0.83286 0.73856 0.85338 0.83979 0.86449 0.90668 0.70584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 8.10 71.98 0.58 -2.68 16 2 C -0.04 -0.79 0.73 -52.93 -0.04 -0.83 16 3 C -0.18 -3.61 7.45 71.98 0.54 -3.07 16 4 C -0.62 -17.06 3.96 71.98 0.28 -16.78 16 5 S 2.64 86.09 3.93 -56.49 -0.22 85.87 16 6 O -0.96 -34.87 13.67 -127.65 -1.75 -36.62 16 7 O -0.96 -31.82 15.73 -127.65 -2.01 -33.83 16 8 N -1.04 -41.65 5.76 -55.37 -0.32 -41.97 16 9 C 0.38 18.04 7.48 133.42 1.00 19.03 16 10 C -0.37 -16.35 7.72 22.73 0.18 -16.18 16 11 C -0.02 -1.00 10.15 22.39 0.23 -0.77 16 12 C -0.31 -15.07 9.83 22.87 0.22 -14.84 16 13 C 0.25 13.69 6.52 40.18 0.26 13.95 16 14 C -0.46 -24.26 9.13 23.46 0.21 -24.05 16 15 H 0.10 4.68 7.86 -2.91 -0.02 4.66 16 16 C 0.03 1.38 5.47 85.29 0.47 1.85 16 17 N -0.75 -39.44 11.56 21.84 0.25 -39.19 16 18 Si 0.99 37.11 29.57 68.60 2.03 39.14 16 19 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 20 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 21 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 22 N -0.54 -29.61 8.00 -186.59 -1.49 -31.10 16 23 C 0.51 10.97 6.92 71.23 0.49 11.46 16 24 O -0.54 -15.89 16.67 21.97 0.37 -15.53 16 25 O -0.50 -6.61 13.10 -51.44 -0.67 -7.28 16 26 H 0.08 1.72 5.55 -2.39 -0.01 1.71 16 27 H 0.11 1.42 8.11 -2.39 -0.02 1.40 16 28 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.12 1.60 7.94 -2.39 -0.02 1.58 16 31 H 0.08 1.62 6.04 -2.39 -0.01 1.61 16 32 H 0.15 3.93 8.14 -2.39 -0.02 3.91 16 33 H 0.15 4.49 5.69 -2.39 -0.01 4.48 16 34 H 0.43 16.64 8.91 -96.75 -0.86 15.78 16 35 H 0.13 4.87 4.32 -2.91 -0.01 4.85 16 36 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.12 5.12 8.06 -2.91 -0.02 5.09 16 38 H 0.28 13.34 8.30 -92.71 -0.77 12.57 16 39 H 0.43 2.13 9.10 -74.06 -0.67 1.45 16 Total: -1.00 -73.14 335.15 0.21 -72.93 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.41 Total: 40.49 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 4.43 Total: -32.91 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -1.56 Total: -112.26 kcal Atomic # 8 Polarization: -89.20 SS G_CDS: -4.06 Total: -93.26 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Atomic # 16 Polarization: 86.09 SS G_CDS: -0.22 Total: 85.87 kcal Total: -73.14 0.21 -72.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603659476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.606 kcal (2) G-P(sol) polarization free energy of solvation -73.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds