Wall clock time and date at job start Tue Mar 31 2020 16:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47242 * 2 1 4 4 H 1.09002 * 109.47195 * 304.40740 * 3 2 1 5 5 C 1.50695 * 109.47595 * 184.40561 * 3 2 1 6 6 H 1.08009 * 119.99999 * 245.26546 * 5 3 2 7 7 C 1.37872 * 120.00184 * 65.26214 * 5 3 2 8 8 N 1.31517 * 120.00011 * 8.62270 * 7 5 3 9 9 Si 1.86798 * 120.00374 * 188.62115 * 7 5 3 10 10 H 1.48499 * 109.47465 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47047 * 300.00429 * 9 7 5 12 12 H 1.48500 * 109.47119 * 60.00324 * 9 7 5 13 13 N 1.46504 * 109.46757 * 64.40232 * 3 2 1 14 14 S 1.65602 * 120.00139 * 215.37997 * 13 3 2 15 15 O 1.42100 * 106.40262 * 179.42010 * 14 13 3 16 16 O 1.42099 * 106.40354 * 312.34197 * 14 13 3 17 17 C 1.76203 * 107.21466 * 65.88159 * 14 13 3 18 18 C 1.38365 * 120.34734 * 94.39152 * 17 14 13 19 19 N 1.31927 * 121.09319 * 179.97438 * 18 17 14 20 20 C 1.31679 * 121.88638 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.72129 * 179.97438 * 20 19 18 22 22 C 1.39576 * 120.56042 * 0.02562 * 20 19 18 23 23 C 1.47718 * 120.56381 * 179.97438 * 22 20 19 24 24 O 1.21466 * 120.00588 * 5.88809 * 23 22 20 25 25 O 1.34713 * 119.99515 * 185.88967 * 23 22 20 26 26 C 1.38340 * 120.34853 * 274.11357 * 17 14 13 27 27 H 1.08994 * 109.47706 * 64.77072 * 1 2 3 28 28 H 1.09002 * 109.46960 * 184.77262 * 1 2 3 29 29 H 1.09003 * 109.46993 * 304.76810 * 1 2 3 30 30 H 1.09006 * 109.47056 * 240.00539 * 2 1 3 31 31 H 1.09002 * 109.47723 * 120.00376 * 2 1 3 32 32 H 0.97003 * 119.99716 * 356.14343 * 8 7 5 33 33 H 0.97001 * 120.00058 * 35.38936 * 13 3 2 34 34 H 1.08004 * 119.45131 * 359.97438 * 18 17 14 35 35 H 1.08996 * 109.47196 * 96.65662 * 21 20 19 36 36 H 1.09007 * 109.47256 * 216.66003 * 21 20 19 37 37 H 1.08998 * 109.46907 * 336.65460 * 21 20 19 38 38 H 0.96704 * 116.99809 * 179.97438 * 25 23 22 39 39 H 1.08000 * 120.85423 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6136 1.9786 -0.8479 5 6 3.5430 1.4440 -0.1091 6 1 4.1435 1.8140 0.7088 7 6 4.1516 0.9729 -1.2531 8 7 3.4269 0.6817 -2.3113 9 14 6.0054 0.7484 -1.3001 10 1 6.4082 0.2343 -2.6338 11 1 6.6686 2.0538 -1.0524 12 1 6.4134 -0.2210 -0.2517 13 7 1.6401 2.1017 1.2457 14 16 1.2343 3.7073 1.2396 15 8 0.8860 4.0382 2.5769 16 8 2.2565 4.3768 0.5142 17 6 -0.2393 3.8691 0.2871 18 6 -1.4764 3.8622 0.9067 19 7 -2.5890 3.9828 0.2080 20 6 -2.5767 4.1150 -1.1021 21 6 -3.8772 4.2486 -1.8517 22 6 -1.3695 4.1314 -1.8024 23 6 -1.3558 4.2791 -3.2721 24 8 -2.3905 4.4947 -3.8707 25 8 -0.1955 4.1747 -3.9486 26 6 -0.1712 4.0100 -1.0874 27 1 -0.3634 0.4380 -0.9296 28 1 -0.3633 -1.0241 0.0855 29 1 -0.3633 0.5861 0.8442 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.4599 0.7448 -2.2691 33 1 1.6131 1.5979 2.0741 34 1 -1.5322 3.7564 1.9801 35 1 -4.0858 5.3031 -2.0323 36 1 -3.8029 3.7245 -2.8046 37 1 -4.6836 3.8147 -1.2604 38 1 -0.2365 4.2784 -4.9092 39 1 0.7813 4.0235 -1.5963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:38 Heat of formation + Delta-G solvation = -134.962542 kcal Electronic energy + Delta-G solvation = -27021.403081 eV Core-core repulsion = 23056.068136 eV Total energy + Delta-G solvation = -3965.334946 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.09247 -39.56821 -36.94133 -36.38435 -36.32458 -35.43531 -33.40818 -32.82681 -32.33485 -30.94406 -28.44262 -26.29502 -25.33603 -23.23952 -22.92134 -22.20245 -20.55862 -19.32783 -18.37857 -17.94545 -17.30923 -16.96601 -16.85259 -16.46746 -15.99200 -15.68597 -15.34223 -14.50325 -14.24893 -13.81239 -13.65275 -13.47661 -13.40482 -13.25386 -12.88750 -12.74034 -12.48999 -12.46426 -11.77889 -11.70920 -11.68313 -11.65075 -11.46423 -11.42834 -10.80836 -10.73223 -10.52104 -10.34668 -10.31285 -10.15443 -10.11615 -9.88452 -9.68188 -9.58745 -8.48370 -8.15353 -6.45651 -4.19484 0.12145 0.59404 0.82920 2.24572 2.76504 3.23042 3.42048 3.44343 3.56403 3.62195 3.91098 4.09589 4.31307 4.36576 4.47915 4.62227 4.82551 5.08826 5.20967 5.30899 5.41866 5.44156 5.48562 5.73438 5.77362 5.78617 5.87597 5.94927 6.14778 6.15322 6.37769 6.42501 6.51915 6.68120 7.08387 7.19998 7.43954 7.70373 7.70956 7.92210 8.38928 8.71756 9.48316 10.89701 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.005269 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.514911 B = 5313.046590 C = 6284.954237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.031 0.969 5 C -0.603 4.603 6 H 0.060 0.940 7 C 0.027 3.973 8 N -0.906 5.906 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.287 1.287 13 N -1.093 6.093 14 S 2.696 3.304 15 O -0.976 6.976 16 O -0.935 6.935 17 C -0.750 4.750 18 C 0.235 3.765 19 N -0.502 5.502 20 C 0.238 3.762 21 C -0.119 4.119 22 C -0.209 4.209 23 C 0.538 3.462 24 O -0.510 6.510 25 O -0.500 6.500 26 C 0.094 3.906 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.269 0.731 33 H 0.409 0.591 34 H 0.181 0.819 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.419 0.581 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.872 3.990 0.978 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.165 3.835 4 H 0.048 0.952 5 C -0.642 4.642 6 H 0.078 0.922 7 C -0.178 4.178 8 N -0.542 5.542 9 Si 0.894 3.106 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.854 5.854 14 S 2.779 3.221 15 O -0.966 6.966 16 O -0.924 6.924 17 C -0.835 4.835 18 C 0.077 3.923 19 N -0.212 5.212 20 C 0.101 3.899 21 C -0.175 4.175 22 C -0.213 4.213 23 C 0.382 3.618 24 O -0.400 6.400 25 O -0.312 6.312 26 C 0.068 3.932 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.243 0.757 34 H 0.198 0.802 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.278 0.722 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.257 4.354 0.859 11.176 hybrid contribution -1.060 0.006 -0.094 1.065 sum -11.317 4.360 0.765 12.152 Atomic orbital electron populations 1.21858 0.98386 1.00224 1.00448 1.21963 0.92606 0.99629 1.02721 1.18661 0.95876 0.89450 0.79538 0.95194 1.22228 0.90479 1.46142 1.05395 0.92163 1.25756 1.07059 0.93449 0.91577 1.70861 1.07859 1.46417 1.29021 0.83569 0.74242 0.76742 0.76015 1.20798 1.21211 1.21371 1.55395 1.82193 1.29610 1.18168 1.02052 0.73353 0.73675 0.72985 1.93536 1.84884 1.83381 1.34779 1.93640 1.52446 1.72664 1.73689 1.32480 1.22423 1.19938 1.08610 1.22887 0.85838 0.82885 1.00708 1.67867 1.30721 1.15878 1.06736 1.21841 0.94600 0.83869 0.89600 1.21219 0.91494 1.04334 1.00469 1.19930 0.95644 1.14516 0.91240 1.20385 0.81088 0.72504 0.87814 1.90833 1.33160 1.45724 1.70327 1.84635 1.35076 1.83910 1.27546 1.21817 0.99418 0.80163 0.91818 0.93954 0.93828 0.93718 0.90264 0.92558 0.92006 0.75684 0.80236 0.89020 0.87695 0.90261 0.72195 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.85 37.16 0.37 -2.13 16 2 C -0.13 -2.55 5.22 -26.73 -0.14 -2.69 16 3 C 0.27 5.81 1.78 -69.08 -0.12 5.69 16 4 H 0.03 0.68 6.37 -51.93 -0.33 0.35 16 5 C -0.60 -15.42 8.76 -34.44 -0.30 -15.72 16 6 H 0.06 1.58 7.83 -52.48 -0.41 1.17 16 7 C 0.03 0.70 5.18 -17.82 -0.09 0.61 16 8 N -0.91 -24.73 13.05 55.43 0.72 -24.01 16 9 Si 1.07 23.95 29.91 -169.99 -5.08 18.87 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 13 N -1.09 -19.84 4.80 -5.88 -0.03 -19.86 16 14 S 2.70 47.98 5.66 -107.50 -0.61 47.38 16 15 O -0.98 -17.57 17.20 -57.17 -0.98 -18.55 16 16 O -0.93 -20.23 17.20 -57.17 -0.98 -21.22 16 17 C -0.75 -11.77 5.90 -39.50 -0.23 -12.01 16 18 C 0.24 3.32 10.68 -17.46 -0.19 3.13 16 19 N -0.50 -7.10 10.26 -9.13 -0.09 -7.20 16 20 C 0.24 3.28 6.82 -82.16 -0.56 2.72 16 21 C -0.12 -1.32 8.88 36.01 0.32 -1.00 16 22 C -0.21 -3.06 5.89 -104.84 -0.62 -3.67 16 23 C 0.54 7.32 8.21 34.60 0.28 7.60 16 24 O -0.51 -7.11 14.16 -19.24 -0.27 -7.38 16 25 O -0.50 -6.11 12.78 -40.53 -0.52 -6.63 16 26 C 0.09 1.50 8.45 -38.85 -0.33 1.17 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.66 7.60 -51.93 -0.39 0.27 16 30 H 0.08 1.76 6.30 -51.93 -0.33 1.43 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.27 7.14 5.98 -40.82 -0.24 6.89 16 33 H 0.41 6.42 8.84 -34.47 -0.30 6.11 16 34 H 0.18 2.10 7.53 -52.48 -0.39 1.71 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.10 1.21 5.85 -51.92 -0.30 0.91 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.42 2.98 9.11 45.56 0.42 3.39 16 39 H 0.17 2.83 7.29 -52.49 -0.38 2.45 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -32.80 345.36 -7.84 -40.64 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.59 Total: 9.05 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -1.61 Total: -16.29 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.60 Total: -51.07 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -2.76 Total: -53.78 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.08 Total: 18.87 kcal Atomic # 16 Polarization: 47.98 SS G_CDS: -0.61 Total: 47.38 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.80 -7.84 -40.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.321 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds