Wall clock time and date at job start Tue Mar 31 2020 16:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47242 * 2 1 4 4 H 1.09002 * 109.47195 * 304.40740 * 3 2 1 5 5 C 1.50695 * 109.47595 * 184.40561 * 3 2 1 6 6 H 1.08009 * 119.99999 * 245.26546 * 5 3 2 7 7 C 1.37872 * 120.00184 * 65.26214 * 5 3 2 8 8 N 1.31517 * 120.00011 * 8.62270 * 7 5 3 9 9 Si 1.86798 * 120.00374 * 188.62115 * 7 5 3 10 10 H 1.48499 * 109.47465 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47047 * 300.00429 * 9 7 5 12 12 H 1.48500 * 109.47119 * 60.00324 * 9 7 5 13 13 N 1.46504 * 109.46757 * 64.40232 * 3 2 1 14 14 S 1.65602 * 120.00139 * 215.37997 * 13 3 2 15 15 O 1.42100 * 106.40262 * 179.42010 * 14 13 3 16 16 O 1.42099 * 106.40354 * 312.34197 * 14 13 3 17 17 C 1.76203 * 107.21466 * 65.88159 * 14 13 3 18 18 C 1.38365 * 120.34734 * 94.39152 * 17 14 13 19 19 N 1.31927 * 121.09319 * 179.97438 * 18 17 14 20 20 C 1.31679 * 121.88638 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.72129 * 179.97438 * 20 19 18 22 22 C 1.39576 * 120.56042 * 0.02562 * 20 19 18 23 23 C 1.47718 * 120.56381 * 179.97438 * 22 20 19 24 24 O 1.21466 * 120.00588 * 5.88809 * 23 22 20 25 25 O 1.34713 * 119.99515 * 185.88967 * 23 22 20 26 26 C 1.38340 * 120.34853 * 274.11357 * 17 14 13 27 27 H 1.08994 * 109.47706 * 64.77072 * 1 2 3 28 28 H 1.09002 * 109.46960 * 184.77262 * 1 2 3 29 29 H 1.09003 * 109.46993 * 304.76810 * 1 2 3 30 30 H 1.09006 * 109.47056 * 240.00539 * 2 1 3 31 31 H 1.09002 * 109.47723 * 120.00376 * 2 1 3 32 32 H 0.97003 * 119.99716 * 356.14343 * 8 7 5 33 33 H 0.97001 * 120.00058 * 35.38936 * 13 3 2 34 34 H 1.08004 * 119.45131 * 359.97438 * 18 17 14 35 35 H 1.08996 * 109.47196 * 96.65662 * 21 20 19 36 36 H 1.09007 * 109.47256 * 216.66003 * 21 20 19 37 37 H 1.08998 * 109.46907 * 336.65460 * 21 20 19 38 38 H 0.96704 * 116.99809 * 179.97438 * 25 23 22 39 39 H 1.08000 * 120.85423 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6136 1.9786 -0.8479 5 6 3.5430 1.4440 -0.1091 6 1 4.1435 1.8140 0.7088 7 6 4.1516 0.9729 -1.2531 8 7 3.4269 0.6817 -2.3113 9 14 6.0054 0.7484 -1.3001 10 1 6.4082 0.2343 -2.6338 11 1 6.6686 2.0538 -1.0524 12 1 6.4134 -0.2210 -0.2517 13 7 1.6401 2.1017 1.2457 14 16 1.2343 3.7073 1.2396 15 8 0.8860 4.0382 2.5769 16 8 2.2565 4.3768 0.5142 17 6 -0.2393 3.8691 0.2871 18 6 -1.4764 3.8622 0.9067 19 7 -2.5890 3.9828 0.2080 20 6 -2.5767 4.1150 -1.1021 21 6 -3.8772 4.2486 -1.8517 22 6 -1.3695 4.1314 -1.8024 23 6 -1.3558 4.2791 -3.2721 24 8 -2.3905 4.4947 -3.8707 25 8 -0.1955 4.1747 -3.9486 26 6 -0.1712 4.0100 -1.0874 27 1 -0.3634 0.4380 -0.9296 28 1 -0.3633 -1.0241 0.0855 29 1 -0.3633 0.5861 0.8442 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.4599 0.7448 -2.2691 33 1 1.6131 1.5979 2.0741 34 1 -1.5322 3.7564 1.9801 35 1 -4.0858 5.3031 -2.0323 36 1 -3.8029 3.7245 -2.8046 37 1 -4.6836 3.8147 -1.2604 38 1 -0.2365 4.2784 -4.9092 39 1 0.7813 4.0235 -1.5963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604980717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:37 Heat of formation + Delta-G solvation = -160.207000 kcal Electronic energy + Delta-G solvation = -27022.497763 eV Core-core repulsion = 23056.068136 eV Total energy + Delta-G solvation = -3966.429628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18951 -40.64479 -38.49150 -37.98597 -37.38076 -36.98112 -34.55557 -34.20123 -33.92982 -32.43767 -29.47520 -28.07818 -26.45262 -25.00709 -24.02724 -23.34346 -22.16848 -20.69825 -19.63370 -19.23490 -19.00428 -18.44666 -17.99932 -17.60037 -17.08129 -16.92787 -16.84200 -15.82296 -15.64020 -15.56710 -14.99424 -14.89550 -14.72458 -14.55973 -14.07088 -13.90831 -13.72571 -13.50789 -13.35324 -13.25207 -13.17336 -13.03163 -12.84267 -12.65549 -12.58863 -12.41177 -11.91731 -11.89720 -11.74697 -11.62308 -11.45197 -11.40424 -10.97228 -10.74555 -10.41893 -9.93210 -8.50382 -6.24345 -1.00563 -0.70192 -0.51377 1.16284 1.59530 1.64784 1.77854 1.83842 1.97540 2.24454 2.60805 2.67052 2.89783 3.12041 3.21125 3.23580 3.45527 3.68915 3.85640 4.21825 4.26139 4.31440 4.33264 4.39969 4.46655 4.61430 4.63882 4.77600 4.85682 4.91118 5.12517 5.14720 5.15661 5.46101 5.49446 5.54441 6.04312 6.21601 6.31924 6.41226 6.69161 6.79457 7.48530 8.85781 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.005269 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.514911 B = 5313.046590 C = 6284.954237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.272 3.728 4 H 0.019 0.981 5 C -0.616 4.616 6 H 0.047 0.953 7 C -0.017 4.017 8 N -0.928 5.928 9 Si 1.101 2.899 10 H -0.284 1.284 11 H -0.283 1.283 12 H -0.269 1.269 13 N -1.090 6.090 14 S 2.713 3.287 15 O -0.976 6.976 16 O -0.980 6.980 17 C -0.753 4.753 18 C 0.242 3.758 19 N -0.501 5.501 20 C 0.241 3.759 21 C -0.115 4.115 22 C -0.217 4.217 23 C 0.541 3.459 24 O -0.513 6.513 25 O -0.508 6.508 26 C 0.083 3.917 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.264 0.736 33 H 0.421 0.579 34 H 0.206 0.794 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.438 0.562 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.527 3.816 1.664 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.166 3.834 4 H 0.037 0.963 5 C -0.655 4.655 6 H 0.065 0.935 7 C -0.218 4.218 8 N -0.565 5.565 9 Si 0.925 3.075 10 H -0.210 1.210 11 H -0.209 1.209 12 H -0.195 1.195 13 N -0.852 5.852 14 S 2.801 3.199 15 O -0.966 6.966 16 O -0.970 6.970 17 C -0.841 4.841 18 C 0.083 3.917 19 N -0.211 5.211 20 C 0.104 3.896 21 C -0.171 4.171 22 C -0.221 4.221 23 C 0.385 3.615 24 O -0.405 6.405 25 O -0.322 6.322 26 C 0.057 3.943 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.257 0.743 34 H 0.223 0.777 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.302 0.698 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.890 4.170 1.571 12.697 hybrid contribution -0.621 0.125 -0.321 0.710 sum -12.511 4.295 1.250 13.287 Atomic orbital electron populations 1.21775 0.95550 1.01859 1.00941 1.21786 0.95101 0.97693 1.01636 1.18430 0.93763 0.90746 0.80416 0.96319 1.22577 0.92840 1.45335 1.04740 0.93494 1.26797 1.10019 0.93328 0.91609 1.70930 1.07777 1.48136 1.29670 0.83121 0.70910 0.77150 0.76364 1.20967 1.20920 1.19461 1.55155 1.82634 1.29615 1.17759 1.01187 0.73249 0.72914 0.72582 1.93526 1.84989 1.83235 1.34880 1.93587 1.55141 1.73636 1.74610 1.32013 1.21829 1.22016 1.08218 1.23299 0.85017 0.81580 1.01839 1.67987 1.30306 1.15999 1.06849 1.22317 0.95310 0.82344 0.89677 1.21284 0.90485 1.05165 1.00155 1.20078 0.95441 1.14611 0.91979 1.20212 0.81263 0.72462 0.87544 1.90830 1.33256 1.46028 1.70355 1.84608 1.34606 1.83580 1.29415 1.21731 0.99473 0.80949 0.92158 0.94551 0.91827 0.91903 0.93016 0.91941 0.92557 0.74293 0.77724 0.87769 0.87999 0.88516 0.69839 0.82937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.85 71.98 0.71 -3.76 16 2 C -0.12 -4.77 5.22 30.59 0.16 -4.61 16 3 C 0.27 11.82 1.78 44.24 0.08 11.90 16 4 H 0.02 0.88 6.37 -2.39 -0.02 0.86 16 5 C -0.62 -31.94 8.76 25.60 0.22 -31.71 16 6 H 0.05 2.50 7.83 -2.91 -0.02 2.48 16 7 C -0.02 -0.91 5.18 84.65 0.44 -0.47 16 8 N -0.93 -51.62 13.05 21.45 0.28 -51.34 16 9 Si 1.10 48.56 29.91 68.60 2.05 50.61 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 13 N -1.09 -39.06 4.80 -172.52 -0.83 -39.89 16 14 S 2.71 95.80 5.66 -56.49 -0.32 95.48 16 15 O -0.98 -33.87 17.20 -128.00 -2.20 -36.07 16 16 O -0.98 -43.42 17.20 -128.00 -2.20 -45.62 16 17 C -0.75 -22.99 5.90 22.32 0.13 -22.86 16 18 C 0.24 6.27 10.68 84.71 0.90 7.17 16 19 N -0.50 -12.90 10.26 -182.80 -1.88 -14.78 16 20 C 0.24 6.13 6.82 42.90 0.29 6.42 16 21 C -0.11 -2.24 8.88 71.24 0.63 -1.61 16 22 C -0.22 -6.13 5.89 -20.00 -0.12 -6.25 16 23 C 0.54 14.24 8.21 70.33 0.58 14.82 16 24 O -0.51 -13.55 14.16 19.94 0.28 -13.27 16 25 O -0.51 -12.23 12.78 -56.22 -0.72 -12.95 16 26 C 0.08 2.65 8.45 22.74 0.19 2.84 16 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.71 7.60 -2.39 -0.02 1.69 16 30 H 0.05 2.31 6.30 -2.38 -0.02 2.30 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.26 14.40 5.98 -92.71 -0.55 13.85 16 33 H 0.42 12.72 8.84 -96.74 -0.86 11.86 16 34 H 0.21 4.16 7.53 -2.91 -0.02 4.14 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.10 2.12 5.85 -2.38 -0.01 2.11 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.44 5.91 9.11 -74.05 -0.67 5.23 16 39 H 0.15 5.34 7.29 -2.91 -0.02 5.32 16 Total: -1.00 -69.75 345.36 -1.50 -71.24 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.19 Total: 24.70 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 4.22 Total: -28.12 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -2.42 Total: -106.01 kcal Atomic # 8 Polarization: -103.07 SS G_CDS: -4.84 Total: -107.91 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.05 Total: 50.61 kcal Atomic # 16 Polarization: 95.80 SS G_CDS: -0.32 Total: 95.48 kcal Total: -69.75 -1.50 -71.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.965 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds