Wall clock time and date at job start Tue Mar 31 2020 16:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46942 * 2 1 4 4 H 1.09002 * 109.47247 * 57.47643 * 3 2 1 5 5 C 1.50701 * 109.47045 * 177.47448 * 3 2 1 6 6 H 1.08001 * 119.99992 * 120.00283 * 5 3 2 7 7 C 1.37875 * 119.99597 * 299.99979 * 5 3 2 8 8 N 1.31519 * 119.99485 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00495 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47178 * 90.00053 * 9 7 5 11 11 H 1.48498 * 109.47192 * 209.99948 * 9 7 5 12 12 H 1.48496 * 109.46976 * 329.99901 * 9 7 5 13 13 N 1.46498 * 109.47286 * 297.47530 * 3 2 1 14 14 S 1.65599 * 120.00215 * 144.80609 * 13 3 2 15 15 O 1.42102 * 106.40302 * 176.17814 * 14 13 3 16 16 O 1.42098 * 106.40016 * 309.09834 * 14 13 3 17 17 C 1.76200 * 107.21801 * 62.63683 * 14 13 3 18 18 C 1.38363 * 120.34440 * 89.99994 * 17 14 13 19 19 N 1.31932 * 121.09151 * 179.97438 * 18 17 14 20 20 C 1.31684 * 121.88594 * 0.02562 * 19 18 17 21 21 C 1.50693 * 119.72100 * 179.97438 * 20 19 18 22 22 C 1.39573 * 120.55817 * 359.97438 * 20 19 18 23 23 C 1.47720 * 120.56280 * 179.97438 * 22 20 19 24 24 O 1.21464 * 120.00118 * 5.53938 * 23 22 20 25 25 O 1.34716 * 119.99533 * 185.53383 * 23 22 20 26 26 C 1.38339 * 120.34762 * 269.71844 * 17 14 13 27 27 H 1.09002 * 109.47500 * 295.08053 * 1 2 3 28 28 H 1.09008 * 109.46955 * 55.08161 * 1 2 3 29 29 H 1.09004 * 109.47050 * 175.07833 * 1 2 3 30 30 H 1.08993 * 109.47156 * 240.00165 * 2 1 3 31 31 H 1.08998 * 109.46833 * 119.99825 * 2 1 3 32 32 H 0.96998 * 120.00142 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99757 * 324.80169 * 13 3 2 34 34 H 1.08001 * 119.45128 * 0.02562 * 18 17 14 35 35 H 1.09004 * 109.46830 * 96.61307 * 21 20 19 36 36 H 1.08997 * 109.47434 * 216.60801 * 21 20 19 37 37 H 1.08998 * 109.47518 * 336.60996 * 21 20 19 38 38 H 0.96705 * 116.99587 * 179.97438 * 25 23 22 39 39 H 1.08009 * 120.85691 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6402 1.9693 0.8665 5 6 3.5457 1.4430 0.0626 6 1 4.1190 1.8989 -0.7310 7 6 4.1913 0.8615 1.1331 8 7 5.5053 0.8623 1.1880 9 14 3.1997 0.0723 2.5055 10 1 2.9662 -1.3593 2.1874 11 1 3.9495 0.1797 3.7827 12 1 1.8951 0.7693 2.6373 13 7 1.6020 2.1154 -1.2254 14 16 1.2012 3.7218 -1.1901 15 8 0.9107 4.0924 -2.5308 16 8 0.2776 3.8815 -0.1220 17 6 2.6514 4.6111 -0.7310 18 6 3.5291 5.0647 -1.6996 19 7 4.6190 5.7324 -1.3725 20 6 4.9225 5.9973 -0.1188 21 6 6.1805 6.7634 0.1995 22 6 4.0888 5.5745 0.9177 23 6 4.4295 5.8710 2.3241 24 8 5.3868 6.5727 2.5822 25 8 3.6783 5.3633 3.3205 26 6 2.9212 4.8682 0.6012 27 1 -0.3634 0.4356 0.9308 28 1 -0.3633 0.5883 -0.8427 29 1 -0.3633 -1.0239 -0.0882 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.9596 0.4529 1.9409 33 1 1.5467 1.6199 -2.0575 34 1 3.3182 4.8696 -2.7407 35 1 5.9398 7.8182 0.3321 36 1 6.6212 6.3733 1.1169 37 1 6.8905 6.6529 -0.6201 38 1 3.9405 5.5848 4.2246 39 1 2.2511 4.5294 1.3776 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:42 Heat of formation + Delta-G solvation = -125.603347 kcal Electronic energy + Delta-G solvation = -27246.390241 eV Core-core repulsion = 23281.461141 eV Total energy + Delta-G solvation = -3964.929101 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78785 -39.29403 -37.00873 -36.36297 -36.14267 -35.54450 -33.11085 -32.50845 -32.37195 -31.15728 -28.16949 -27.35463 -25.05140 -22.85048 -22.63553 -21.97423 -20.75705 -19.27067 -18.21327 -17.83063 -17.21942 -16.81760 -16.62967 -16.24674 -15.72534 -15.58555 -15.52991 -14.71469 -14.18252 -14.14640 -13.66893 -13.42481 -13.19726 -12.86545 -12.61857 -12.47631 -12.32227 -12.25787 -12.16128 -11.83649 -11.73177 -11.68074 -11.51406 -11.38346 -11.25924 -10.90733 -10.69149 -10.28858 -10.15340 -9.97914 -9.92084 -9.57447 -9.52969 -9.27099 -8.77714 -8.50740 -6.29742 -4.33487 0.45401 0.79375 1.04485 2.52650 3.00824 3.11311 3.23524 3.24995 3.38497 3.65933 4.10952 4.19341 4.25912 4.54382 4.63448 4.89121 4.98848 5.11275 5.23636 5.55692 5.67921 5.70901 5.72443 5.73424 5.75434 5.90571 6.01343 6.11604 6.16429 6.38459 6.44405 6.47869 6.56871 6.62606 6.80500 7.09009 7.36326 7.65427 7.78555 7.91927 8.25524 8.72999 9.29646 10.82032 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.006926 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.408509 B = 4041.561968 C = 5425.577977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.132 4.132 3 C 0.245 3.755 4 H 0.048 0.952 5 C -0.542 4.542 6 H 0.081 0.919 7 C 0.081 3.919 8 N -0.886 5.886 9 Si 0.872 3.128 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.259 1.259 13 N -1.091 6.091 14 S 2.706 3.294 15 O -0.974 6.974 16 O -0.961 6.961 17 C -0.734 4.734 18 C 0.241 3.759 19 N -0.503 5.503 20 C 0.244 3.756 21 C -0.118 4.118 22 C -0.204 4.204 23 C 0.542 3.458 24 O -0.511 6.511 25 O -0.505 6.505 26 C 0.109 3.891 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.267 0.733 33 H 0.412 0.588 34 H 0.176 0.824 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.415 0.585 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.726 6.607 -0.179 8.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.171 4.171 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.581 4.581 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.522 5.522 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.221 1.221 12 H -0.183 1.183 13 N -0.852 5.852 14 S 2.792 3.208 15 O -0.964 6.964 16 O -0.951 6.951 17 C -0.821 4.821 18 C 0.082 3.918 19 N -0.213 5.213 20 C 0.106 3.894 21 C -0.174 4.174 22 C -0.208 4.208 23 C 0.386 3.614 24 O -0.402 6.402 25 O -0.317 6.317 26 C 0.083 3.917 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.246 0.754 34 H 0.193 0.807 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.273 0.727 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.634 7.416 -1.039 8.807 hybrid contribution 0.111 -1.094 1.913 2.207 sum -4.523 6.322 0.874 7.823 Atomic orbital electron populations 1.21869 0.97245 1.00424 1.01768 1.22128 0.94058 0.98934 1.01994 1.19055 0.95352 0.90098 0.81600 0.93425 1.21361 0.88853 1.39428 1.08454 0.90062 1.24887 0.94710 0.95184 0.97599 1.69878 1.07401 1.43747 1.31173 0.87084 0.80737 0.80370 0.81687 1.20107 1.22074 1.18345 1.55212 1.84844 1.26294 1.18858 1.01466 0.73387 0.72829 0.73118 1.93548 1.83806 1.82990 1.36025 1.93569 1.58529 1.85938 1.57063 1.31924 1.26647 1.21775 1.01775 1.22722 0.85433 0.84261 0.99415 1.67807 1.18324 1.16115 1.19011 1.21734 0.93186 0.87241 0.87206 1.21196 0.92591 0.99509 1.04143 1.19787 1.00229 1.09658 0.91134 1.20409 0.79312 0.75787 0.85862 1.90815 1.27734 1.36823 1.84834 1.84598 1.56619 1.70954 1.19480 1.21517 0.92171 0.83015 0.95033 0.93078 0.92744 0.93709 0.91329 0.92305 0.92336 0.75354 0.80690 0.89366 0.87694 0.90333 0.72674 0.82040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.84 37.16 0.37 -2.13 16 2 C -0.13 -2.49 5.05 -26.73 -0.13 -2.63 16 3 C 0.24 4.99 1.87 -69.08 -0.13 4.86 16 4 H 0.05 1.01 6.63 -51.93 -0.34 0.67 16 5 C -0.54 -13.14 9.35 -34.44 -0.32 -13.46 16 6 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 7 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.89 -24.78 13.96 55.43 0.77 -24.01 16 9 Si 0.87 19.78 24.39 -169.99 -4.15 15.63 16 10 H -0.27 -6.07 6.85 56.52 0.39 -5.68 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.26 -5.57 6.53 56.52 0.37 -5.20 16 13 N -1.09 -18.82 4.71 -5.88 -0.03 -18.84 16 14 S 2.71 46.20 5.71 -107.50 -0.61 45.58 16 15 O -0.97 -17.03 17.30 -57.17 -0.99 -18.02 16 16 O -0.96 -18.15 16.78 -57.17 -0.96 -19.11 16 17 C -0.73 -12.73 5.84 -39.50 -0.23 -12.96 16 18 C 0.24 3.99 10.68 -17.46 -0.19 3.81 16 19 N -0.50 -8.65 10.26 -9.13 -0.09 -8.74 16 20 C 0.24 4.13 6.82 -82.16 -0.56 3.57 16 21 C -0.12 -1.67 8.89 36.00 0.32 -1.35 16 22 C -0.20 -3.54 5.89 -104.83 -0.62 -4.16 16 23 C 0.54 8.64 8.21 34.61 0.28 8.93 16 24 O -0.51 -8.37 14.15 -19.24 -0.27 -8.64 16 25 O -0.51 -6.82 12.77 -40.53 -0.52 -7.34 16 26 C 0.11 1.92 9.21 -38.85 -0.36 1.57 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.80 7.54 -51.92 -0.39 0.41 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.20 3.23 -51.93 -0.17 1.03 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.41 6.06 8.84 -34.47 -0.30 5.76 16 34 H 0.18 2.43 7.62 -52.49 -0.40 2.03 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.10 1.59 5.83 -51.93 -0.30 1.29 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.41 3.38 9.11 45.56 0.42 3.79 16 39 H 0.16 2.72 7.35 -52.48 -0.39 2.33 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -32.12 340.84 -6.98 -39.09 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -3.60 Total: 11.23 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.67 Total: -11.95 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.65 Total: -51.60 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -2.74 Total: -53.11 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.15 Total: 15.63 kcal Atomic # 16 Polarization: 46.20 SS G_CDS: -0.61 Total: 45.58 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.12 -6.98 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.512 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds