Wall clock time and date at job start Tue Mar 31 2020 16:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46942 * 2 1 4 4 H 1.09002 * 109.47247 * 57.47643 * 3 2 1 5 5 C 1.50701 * 109.47045 * 177.47448 * 3 2 1 6 6 H 1.08001 * 119.99992 * 120.00283 * 5 3 2 7 7 C 1.37875 * 119.99597 * 299.99979 * 5 3 2 8 8 N 1.31519 * 119.99485 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00495 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47178 * 90.00053 * 9 7 5 11 11 H 1.48498 * 109.47192 * 209.99948 * 9 7 5 12 12 H 1.48496 * 109.46976 * 329.99901 * 9 7 5 13 13 N 1.46498 * 109.47286 * 297.47530 * 3 2 1 14 14 S 1.65599 * 120.00215 * 144.80609 * 13 3 2 15 15 O 1.42102 * 106.40302 * 176.17814 * 14 13 3 16 16 O 1.42098 * 106.40016 * 309.09834 * 14 13 3 17 17 C 1.76200 * 107.21801 * 62.63683 * 14 13 3 18 18 C 1.38363 * 120.34440 * 89.99994 * 17 14 13 19 19 N 1.31932 * 121.09151 * 179.97438 * 18 17 14 20 20 C 1.31684 * 121.88594 * 0.02562 * 19 18 17 21 21 C 1.50693 * 119.72100 * 179.97438 * 20 19 18 22 22 C 1.39573 * 120.55817 * 359.97438 * 20 19 18 23 23 C 1.47720 * 120.56280 * 179.97438 * 22 20 19 24 24 O 1.21464 * 120.00118 * 5.53938 * 23 22 20 25 25 O 1.34716 * 119.99533 * 185.53383 * 23 22 20 26 26 C 1.38339 * 120.34762 * 269.71844 * 17 14 13 27 27 H 1.09002 * 109.47500 * 295.08053 * 1 2 3 28 28 H 1.09008 * 109.46955 * 55.08161 * 1 2 3 29 29 H 1.09004 * 109.47050 * 175.07833 * 1 2 3 30 30 H 1.08993 * 109.47156 * 240.00165 * 2 1 3 31 31 H 1.08998 * 109.46833 * 119.99825 * 2 1 3 32 32 H 0.96998 * 120.00142 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99757 * 324.80169 * 13 3 2 34 34 H 1.08001 * 119.45128 * 0.02562 * 18 17 14 35 35 H 1.09004 * 109.46830 * 96.61307 * 21 20 19 36 36 H 1.08997 * 109.47434 * 216.60801 * 21 20 19 37 37 H 1.08998 * 109.47518 * 336.60996 * 21 20 19 38 38 H 0.96705 * 116.99587 * 179.97438 * 25 23 22 39 39 H 1.08009 * 120.85691 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6402 1.9693 0.8665 5 6 3.5457 1.4430 0.0626 6 1 4.1190 1.8989 -0.7310 7 6 4.1913 0.8615 1.1331 8 7 5.5053 0.8623 1.1880 9 14 3.1997 0.0723 2.5055 10 1 2.9662 -1.3593 2.1874 11 1 3.9495 0.1797 3.7827 12 1 1.8951 0.7693 2.6373 13 7 1.6020 2.1154 -1.2254 14 16 1.2012 3.7218 -1.1901 15 8 0.9107 4.0924 -2.5308 16 8 0.2776 3.8815 -0.1220 17 6 2.6514 4.6111 -0.7310 18 6 3.5291 5.0647 -1.6996 19 7 4.6190 5.7324 -1.3725 20 6 4.9225 5.9973 -0.1188 21 6 6.1805 6.7634 0.1995 22 6 4.0888 5.5745 0.9177 23 6 4.4295 5.8710 2.3241 24 8 5.3868 6.5727 2.5822 25 8 3.6783 5.3633 3.3205 26 6 2.9212 4.8682 0.6012 27 1 -0.3634 0.4356 0.9308 28 1 -0.3633 0.5883 -0.8427 29 1 -0.3633 -1.0239 -0.0882 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.9596 0.4529 1.9409 33 1 1.5467 1.6199 -2.0575 34 1 3.3182 4.8696 -2.7407 35 1 5.9398 7.8182 0.3321 36 1 6.6212 6.3733 1.1169 37 1 6.8905 6.6529 -0.6201 38 1 3.9405 5.5848 4.2246 39 1 2.2511 4.5294 1.3776 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604980718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:41 Heat of formation + Delta-G solvation = -151.505535 kcal Electronic energy + Delta-G solvation = -27247.513444 eV Core-core repulsion = 23281.461141 eV Total energy + Delta-G solvation = -3966.052304 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.05109 -40.53664 -38.46905 -37.90338 -37.31426 -36.98122 -34.41523 -34.27402 -33.79888 -32.56108 -29.41795 -29.05442 -26.33735 -24.49504 -23.92089 -23.24954 -22.30492 -20.65462 -19.51936 -19.20340 -18.78499 -18.43400 -17.93176 -17.53302 -17.16694 -16.94401 -16.87316 -16.29516 -15.65713 -15.44455 -15.22092 -14.66941 -14.52719 -14.46620 -13.98248 -13.85128 -13.74667 -13.63667 -13.43734 -13.29245 -13.19458 -13.14097 -12.87994 -12.75993 -12.59881 -12.51892 -12.24858 -11.75175 -11.63457 -11.48741 -11.31779 -11.24426 -10.87524 -10.70307 -10.58734 -10.10204 -8.28182 -6.33293 -0.85895 -0.58193 -0.31249 1.26263 1.32248 1.40375 1.46659 1.85462 1.99004 2.31625 2.32694 2.74133 3.01062 3.06738 3.21000 3.36044 3.59897 3.80801 3.94960 4.24792 4.31650 4.33591 4.42641 4.47317 4.52320 4.63509 4.66502 4.81719 4.94596 4.96537 5.10939 5.20275 5.24099 5.38776 5.50517 5.54075 5.59873 6.23564 6.37596 6.46813 6.73778 6.85132 7.32933 8.86687 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.006926 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.408509 B = 4041.561968 C = 5425.577977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C 0.246 3.754 4 H 0.046 0.954 5 C -0.525 4.525 6 H 0.050 0.950 7 C 0.030 3.970 8 N -0.936 5.936 9 Si 0.918 3.082 10 H -0.264 1.264 11 H -0.303 1.303 12 H -0.239 1.239 13 N -1.086 6.086 14 S 2.726 3.274 15 O -0.974 6.974 16 O -0.976 6.976 17 C -0.745 4.745 18 C 0.234 3.766 19 N -0.511 5.511 20 C 0.232 3.768 21 C -0.112 4.112 22 C -0.221 4.221 23 C 0.543 3.457 24 O -0.519 6.519 25 O -0.504 6.504 26 C 0.095 3.905 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.424 0.576 34 H 0.199 0.801 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.437 0.563 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.337 6.391 -0.230 9.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 C 0.140 3.860 4 H 0.063 0.937 5 C -0.564 4.564 6 H 0.068 0.932 7 C -0.169 4.169 8 N -0.575 5.575 9 Si 0.745 3.255 10 H -0.190 1.190 11 H -0.231 1.231 12 H -0.163 1.163 13 N -0.848 5.848 14 S 2.812 3.188 15 O -0.964 6.964 16 O -0.966 6.966 17 C -0.832 4.832 18 C 0.075 3.925 19 N -0.222 5.222 20 C 0.095 3.905 21 C -0.169 4.169 22 C -0.225 4.225 23 C 0.388 3.612 24 O -0.411 6.411 25 O -0.319 6.319 26 C 0.069 3.931 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.261 0.739 34 H 0.216 0.784 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.299 0.701 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.284 7.197 -1.094 9.617 hybrid contribution 0.630 -0.963 1.869 2.195 sum -5.654 6.234 0.775 8.452 Atomic orbital electron populations 1.21860 0.94700 1.02332 1.02225 1.22080 0.96372 0.97113 1.01813 1.18870 0.92760 0.91713 0.82693 0.93658 1.21548 0.90874 1.37211 1.06774 0.93173 1.25552 0.95250 0.96153 0.99951 1.70019 1.09222 1.46075 1.32174 0.86324 0.80152 0.80351 0.78661 1.18998 1.23149 1.16250 1.55051 1.84522 1.26557 1.18662 1.00874 0.72877 0.72403 0.72622 1.93543 1.83879 1.82931 1.36085 1.93546 1.59268 1.86095 1.57653 1.31966 1.26959 1.22317 1.01946 1.23170 0.85106 0.83749 1.00475 1.67863 1.18586 1.16485 1.19234 1.22208 0.93955 0.87175 0.87194 1.21219 0.91576 1.00135 1.03948 1.20046 1.00309 1.09813 0.92302 1.20222 0.79344 0.75779 0.85897 1.90808 1.28016 1.37233 1.85004 1.84546 1.56125 1.70496 1.20685 1.21682 0.92597 0.83412 0.95416 0.93304 0.91555 0.91283 0.90558 0.93533 0.92709 0.73900 0.78389 0.87432 0.88638 0.89330 0.70053 0.81702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 9.84 71.98 0.71 -3.68 16 2 C -0.13 -4.74 5.05 30.60 0.15 -4.58 16 3 C 0.25 9.66 1.87 44.25 0.08 9.74 16 4 H 0.05 1.84 6.63 -2.39 -0.02 1.82 16 5 C -0.52 -25.36 9.35 25.60 0.24 -25.12 16 6 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 7 C 0.03 1.58 5.45 84.65 0.46 2.04 16 8 N -0.94 -53.49 13.96 21.45 0.30 -53.19 16 9 Si 0.92 40.03 24.39 68.60 1.67 41.70 16 10 H -0.26 -10.99 6.85 99.48 0.68 -10.31 16 11 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.24 -9.54 6.53 99.48 0.65 -8.89 16 13 N -1.09 -35.60 4.71 -172.52 -0.81 -36.41 16 14 S 2.73 89.12 5.71 -56.49 -0.32 88.80 16 15 O -0.97 -32.24 17.30 -128.00 -2.21 -34.45 16 16 O -0.98 -35.30 16.78 -128.00 -2.15 -37.45 16 17 C -0.75 -25.40 5.84 22.32 0.13 -25.27 16 18 C 0.23 7.62 10.68 84.71 0.90 8.53 16 19 N -0.51 -17.41 10.26 -182.81 -1.88 -19.28 16 20 C 0.23 7.81 6.82 42.90 0.29 8.11 16 21 C -0.11 -3.12 8.89 71.23 0.63 -2.49 16 22 C -0.22 -7.64 5.89 -20.00 -0.12 -7.76 16 23 C 0.54 17.10 8.21 70.33 0.58 17.68 16 24 O -0.52 -16.69 14.15 19.95 0.28 -16.41 16 25 O -0.50 -13.14 12.77 -56.25 -0.72 -13.86 16 26 C 0.10 3.34 9.21 22.74 0.21 3.55 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.72 7.54 -2.38 -0.02 1.70 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.05 1.77 3.23 -2.39 -0.01 1.76 16 32 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.42 11.60 8.84 -96.74 -0.86 10.75 16 34 H 0.20 5.27 7.62 -2.91 -0.02 5.25 16 35 H 0.11 2.54 8.14 -2.38 -0.02 2.53 16 36 H 0.10 2.88 5.83 -2.39 -0.01 2.86 16 37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.44 6.50 9.11 -74.05 -0.67 5.83 16 39 H 0.17 5.52 7.35 -2.91 -0.02 5.49 16 Total: -1.00 -67.79 340.84 -2.04 -69.83 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.48 Total: 29.98 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 4.28 Total: -19.26 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -2.39 Total: -108.88 kcal Atomic # 8 Polarization: -97.37 SS G_CDS: -4.80 Total: -102.17 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.67 Total: 41.70 kcal Atomic # 16 Polarization: 89.12 SS G_CDS: -0.32 Total: 88.80 kcal Total: -67.79 -2.04 -69.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.672 kcal (2) G-P(sol) polarization free energy of solvation -67.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds