Wall clock time and date at job start Tue Mar 31 2020 15:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86800 * 119.99902 * 2 1 4 4 H 1.48499 * 109.47107 * 240.00070 * 3 2 1 5 5 H 1.48508 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47257 * 119.99807 * 3 2 1 7 7 C 1.40027 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.41330 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.40611 * 119.78486 * 179.97438 * 9 7 2 11 11 C 1.38321 * 119.13826 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.67041 * 0.02562 * 11 10 9 13 13 C 1.39682 * 119.49009 * 359.97438 * 12 11 10 14 14 N 1.39116 * 119.57186 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99954 * 342.83406 * 14 13 12 16 16 O 1.21701 * 120.00376 * 3.54205 * 15 14 13 17 17 C 1.46336 * 119.99795 * 183.53760 * 15 14 13 18 18 C 1.35277 * 119.99998 * 187.03758 * 17 15 14 19 19 C 1.46332 * 119.99746 * 20.38002 * 18 17 15 20 20 C 1.38124 * 125.81340 * 200.61653 * 19 18 17 21 21 C 1.39758 * 106.84607 * 179.90502 * 20 19 18 22 22 C 1.37811 * 106.89333 * 0.35451 * 21 20 19 23 23 C 1.46827 * 125.77911 * 179.78116 * 22 21 20 24 24 O 1.21578 * 119.99991 * 0.02562 * 23 22 21 25 25 O 1.34872 * 119.99958 * 180.02562 * 23 22 21 26 26 O 1.34552 * 125.81972 * 20.92520 * 19 18 17 27 27 N 1.31957 * 120.84672 * 0.25811 * 13 12 11 28 28 H 0.97005 * 119.99965 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.43453 * 0.02562 * 10 9 7 30 30 H 1.07994 * 120.66364 * 179.97438 * 11 10 9 31 31 H 1.07991 * 120.25236 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99960 * 162.84512 * 14 13 12 33 33 H 1.07995 * 119.99963 * 6.75717 * 17 15 14 34 34 H 1.07996 * 119.99779 * 200.37833 * 18 17 15 35 35 H 1.07998 * 126.57292 * 0.03667 * 20 19 18 36 36 H 1.08006 * 126.54839 * 180.09763 * 21 20 19 37 37 H 0.96702 * 116.99719 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3010 -2.4366 0.0005 10 6 2.0086 -3.6517 0.0005 11 6 1.3035 -4.8417 0.0011 12 6 -0.0825 -4.7939 0.0011 13 6 -0.7278 -3.5550 0.0010 14 7 -2.1181 -3.5051 0.0005 15 6 -2.8314 -4.5953 -0.3445 16 8 -2.2618 -5.6417 -0.5931 17 6 -4.2909 -4.5209 -0.4202 18 6 -5.0158 -5.6444 -0.6259 19 6 -4.4329 -6.9546 -0.3346 20 6 -4.8633 -8.1628 -0.8474 21 6 -4.0304 -9.1495 -0.3127 22 6 -3.1296 -8.5099 0.5110 23 6 -2.0658 -9.1588 1.2877 24 8 -1.9237 -10.3651 1.2344 25 8 -1.2463 -8.4167 2.0602 26 8 -3.3902 -7.1884 0.4830 27 7 -0.0356 -2.4316 -0.0041 28 1 -0.4850 0.8401 -0.0004 29 1 3.0885 -3.6558 0.0010 30 1 1.8220 -5.7891 0.0007 31 1 -0.6585 -5.7074 0.0019 32 1 -2.5740 -2.6855 0.2482 33 1 -4.7897 -3.5696 -0.3072 34 1 -6.0245 -5.5743 -1.0051 35 1 -5.6845 -8.3153 -1.5320 36 1 -4.0852 -10.2109 -0.5049 37 1 -0.5608 -8.8886 2.5526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605601434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:41 Heat of formation + Delta-G solvation = -28.103236 kcal Electronic energy + Delta-G solvation = -26916.744630 eV Core-core repulsion = 22820.599500 eV Total energy + Delta-G solvation = -4096.145130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.56903 -39.99109 -39.77172 -37.74735 -36.20820 -34.48067 -33.88004 -33.26229 -33.02289 -30.39751 -29.84841 -28.94790 -25.81241 -25.06205 -23.24682 -21.86329 -21.62043 -21.25225 -20.43694 -19.40338 -18.47868 -17.86936 -17.50467 -17.04037 -16.55724 -16.23772 -15.30877 -15.15537 -14.85642 -14.69869 -14.33620 -14.21278 -13.81497 -13.52094 -13.38643 -13.19132 -13.00248 -12.73073 -12.41336 -12.25080 -11.98026 -11.66805 -11.24298 -11.16071 -11.04461 -10.96866 -10.65285 -10.35927 -10.13534 -10.01462 -9.83287 -9.20110 -8.86578 -8.22128 -8.02489 -7.68330 -7.10277 -6.41552 -4.50659 0.19806 1.25502 2.37059 2.42421 2.76965 2.85200 2.97628 3.06995 3.10022 3.20247 3.25584 3.53689 3.70814 3.94517 4.39267 4.71262 4.78192 4.87184 5.07048 5.16145 5.43041 5.45501 5.63640 5.82150 5.90444 5.93825 6.17171 6.23582 6.29041 6.41567 6.76801 6.80639 6.87953 6.90985 7.14588 7.47601 7.51332 7.77152 7.84952 7.94317 8.14332 8.30806 8.64894 8.71336 8.96653 10.04323 10.31168 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.003221 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.460928 B = 8690.607298 C = 9882.115288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.437 4.437 8 H 0.084 0.916 9 C 0.279 3.721 10 C -0.286 4.286 11 C -0.052 4.052 12 C -0.313 4.313 13 C 0.351 3.649 14 N -0.633 5.633 15 C 0.529 3.471 16 O -0.502 6.502 17 C -0.168 4.168 18 C -0.028 4.028 19 C 0.063 3.937 20 C -0.203 4.203 21 C -0.115 4.115 22 C -0.056 4.056 23 C 0.574 3.426 24 O -0.505 6.505 25 O -0.494 6.494 26 O -0.101 6.101 27 N -0.507 5.507 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.147 0.853 32 H 0.408 0.592 33 H 0.147 0.853 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.454 -9.297 0.729 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.152 4.152 3 Si 0.732 3.268 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.469 4.469 8 H 0.102 0.898 9 C 0.152 3.848 10 C -0.309 4.309 11 C -0.077 4.077 12 C -0.338 4.338 13 C 0.117 3.883 14 N -0.276 5.276 15 C 0.317 3.683 16 O -0.380 6.380 17 C -0.189 4.189 18 C -0.047 4.047 19 C 0.009 3.991 20 C -0.222 4.222 21 C -0.135 4.135 22 C -0.109 4.109 23 C 0.418 3.582 24 O -0.395 6.395 25 O -0.305 6.305 26 O 0.007 5.993 27 N -0.226 5.226 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.164 0.836 32 H 0.243 0.757 33 H 0.165 0.835 34 H 0.183 0.817 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -12.762 -8.963 0.492 15.602 hybrid contribution 1.066 0.172 0.240 1.106 sum -11.696 -8.791 0.732 14.649 Atomic orbital electron populations 1.70107 1.07188 1.27542 1.29820 1.26020 0.94887 1.00934 0.93398 0.86398 0.80080 0.80490 0.79863 1.19012 1.20328 1.18984 1.19516 0.94182 0.89248 1.43986 0.89792 1.18154 0.86421 0.92061 0.88170 1.21742 0.98741 0.93570 1.16874 1.20849 0.93905 0.96495 0.96468 1.22105 0.94716 0.98252 1.18704 1.18526 0.82773 0.91215 0.95795 1.43048 1.05790 1.14682 1.64091 1.18293 0.87596 0.83878 0.78532 1.90690 1.70334 1.29070 1.47856 1.23447 0.93587 1.00150 1.01742 1.21554 0.99396 0.86931 0.96845 1.21227 0.87825 0.95265 0.94768 1.22110 1.04129 0.90637 1.05338 1.21978 0.94153 1.01082 0.96292 1.21000 1.01115 0.82151 1.06589 1.18975 0.79030 0.83858 0.76288 1.90960 1.70641 1.14280 1.63666 1.84758 1.44552 1.44161 1.57005 1.84435 1.39596 1.23567 1.51683 1.68052 1.08227 1.24627 1.21653 0.91837 0.88337 0.88501 0.83591 0.75658 0.83486 0.81654 0.82061 0.81987 0.72393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.70 11.46 55.55 0.64 -18.06 16 2 C 0.07 1.81 5.50 -17.34 -0.10 1.71 16 3 Si 0.91 18.41 29.56 -169.99 -5.02 13.39 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.44 -11.70 9.14 -37.74 -0.34 -12.04 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.28 7.71 6.55 -85.00 -0.56 7.15 16 10 C -0.29 -7.27 9.83 -38.66 -0.38 -7.65 16 11 C -0.05 -1.26 10.15 -39.38 -0.40 -1.66 16 12 C -0.31 -7.72 8.95 -38.88 -0.35 -8.07 16 13 C 0.35 8.69 7.54 -155.08 -1.17 7.52 16 14 N -0.63 -12.54 5.40 -12.70 -0.07 -12.61 16 15 C 0.53 9.35 7.27 -13.00 -0.09 9.25 16 16 O -0.50 -10.31 9.32 -19.59 -0.18 -10.49 16 17 C -0.17 -1.97 10.04 -37.38 -0.38 -2.34 16 18 C -0.03 -0.28 10.09 -37.38 -0.38 -0.65 16 19 C 0.06 0.82 5.96 -36.37 -0.22 0.60 16 20 C -0.20 -2.19 10.88 -39.06 -0.42 -2.62 16 21 C -0.12 -1.41 10.64 -39.17 -0.42 -1.83 16 22 C -0.06 -0.84 7.21 -36.27 -0.26 -1.11 16 23 C 0.57 8.48 8.32 34.20 0.28 8.76 16 24 O -0.50 -7.89 17.65 -19.32 -0.34 -8.24 16 25 O -0.49 -6.67 13.44 -42.47 -0.57 -7.25 16 26 O -0.10 -1.63 7.46 -22.38 -0.17 -1.80 16 27 N -0.51 -13.81 7.89 -10.28 -0.08 -13.89 16 28 H 0.27 6.32 8.29 -40.82 -0.34 5.98 16 29 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 30 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.15 3.59 4.92 -54.26 -0.27 3.32 16 32 H 0.41 7.14 8.80 -40.82 -0.36 6.78 16 33 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.42 3.33 9.11 45.56 0.42 3.75 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -35.48 338.89 -8.16 -43.65 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -2.29 Total: 13.17 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -5.18 Total: -2.97 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.49 Total: -44.56 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -1.26 Total: -27.77 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.48 -8.16 -43.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605601434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.545 kcal (2) G-P(sol) polarization free energy of solvation -35.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds