Wall clock time and date at job start Tue Mar 31 2020 15:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86800 * 119.99902 * 2 1 4 4 H 1.48499 * 109.47107 * 240.00070 * 3 2 1 5 5 H 1.48508 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47257 * 119.99807 * 3 2 1 7 7 C 1.40027 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.41330 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.40611 * 119.78486 * 179.97438 * 9 7 2 11 11 C 1.38321 * 119.13826 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.67041 * 0.02562 * 11 10 9 13 13 C 1.39682 * 119.49009 * 359.97438 * 12 11 10 14 14 N 1.39116 * 119.57186 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99954 * 342.83406 * 14 13 12 16 16 O 1.21701 * 120.00376 * 3.54205 * 15 14 13 17 17 C 1.46336 * 119.99795 * 183.53760 * 15 14 13 18 18 C 1.35277 * 119.99998 * 187.03758 * 17 15 14 19 19 C 1.46332 * 119.99746 * 20.38002 * 18 17 15 20 20 C 1.38124 * 125.81340 * 200.61653 * 19 18 17 21 21 C 1.39758 * 106.84607 * 179.90502 * 20 19 18 22 22 C 1.37811 * 106.89333 * 0.35451 * 21 20 19 23 23 C 1.46827 * 125.77911 * 179.78116 * 22 21 20 24 24 O 1.21578 * 119.99991 * 0.02562 * 23 22 21 25 25 O 1.34872 * 119.99958 * 180.02562 * 23 22 21 26 26 O 1.34552 * 125.81972 * 20.92520 * 19 18 17 27 27 N 1.31957 * 120.84672 * 0.25811 * 13 12 11 28 28 H 0.97005 * 119.99965 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.43453 * 0.02562 * 10 9 7 30 30 H 1.07994 * 120.66364 * 179.97438 * 11 10 9 31 31 H 1.07991 * 120.25236 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99960 * 162.84512 * 14 13 12 33 33 H 1.07995 * 119.99963 * 6.75717 * 17 15 14 34 34 H 1.07996 * 119.99779 * 200.37833 * 18 17 15 35 35 H 1.07998 * 126.57292 * 0.03667 * 20 19 18 36 36 H 1.08006 * 126.54839 * 180.09763 * 21 20 19 37 37 H 0.96702 * 116.99719 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3010 -2.4366 0.0005 10 6 2.0086 -3.6517 0.0005 11 6 1.3035 -4.8417 0.0011 12 6 -0.0825 -4.7939 0.0011 13 6 -0.7278 -3.5550 0.0010 14 7 -2.1181 -3.5051 0.0005 15 6 -2.8314 -4.5953 -0.3445 16 8 -2.2618 -5.6417 -0.5931 17 6 -4.2909 -4.5209 -0.4202 18 6 -5.0158 -5.6444 -0.6259 19 6 -4.4329 -6.9546 -0.3346 20 6 -4.8633 -8.1628 -0.8474 21 6 -4.0304 -9.1495 -0.3127 22 6 -3.1296 -8.5099 0.5110 23 6 -2.0658 -9.1588 1.2877 24 8 -1.9237 -10.3651 1.2344 25 8 -1.2463 -8.4167 2.0602 26 8 -3.3902 -7.1884 0.4830 27 7 -0.0356 -2.4316 -0.0041 28 1 -0.4850 0.8401 -0.0004 29 1 3.0885 -3.6558 0.0010 30 1 1.8220 -5.7891 0.0007 31 1 -0.6585 -5.7074 0.0019 32 1 -2.5740 -2.6855 0.2482 33 1 -4.7897 -3.5696 -0.3072 34 1 -6.0245 -5.5743 -1.0051 35 1 -5.6845 -8.3153 -1.5320 36 1 -4.0852 -10.2109 -0.5049 37 1 -0.5608 -8.8886 2.5526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605601434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:40 Heat of formation + Delta-G solvation = -51.869180 kcal Electronic energy + Delta-G solvation = -26917.775198 eV Core-core repulsion = 22820.599500 eV Total energy + Delta-G solvation = -4097.175699 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.55953 -41.39722 -41.00295 -39.51098 -37.31396 -36.08059 -35.10550 -34.89976 -34.00251 -32.31865 -31.34962 -30.30244 -27.55881 -26.35170 -24.53379 -23.50919 -22.85445 -22.61970 -21.76232 -20.61914 -19.57855 -19.37540 -18.95025 -18.32627 -18.01694 -17.51613 -16.79771 -16.46894 -16.26608 -16.12138 -16.07213 -15.41855 -15.08926 -14.88239 -14.69971 -14.28364 -14.18711 -14.08034 -13.88224 -13.74022 -13.28288 -12.93604 -12.87993 -12.78250 -12.68766 -12.58093 -12.17564 -11.86247 -11.61812 -11.21813 -11.03787 -10.92290 -10.43094 -9.96568 -9.63451 -9.23352 -8.92629 -8.30052 -6.50954 -0.78842 0.24369 0.87020 1.11567 1.42654 1.45530 1.51833 1.54136 1.59860 1.81009 2.13318 2.24723 2.30114 2.36626 2.89374 3.49529 3.78629 3.85615 3.93765 4.12453 4.32445 4.42022 4.51667 4.62895 4.64546 4.77165 4.86821 4.92533 4.98033 5.07449 5.11677 5.24851 5.28920 5.42930 5.63528 5.67541 5.95200 5.97319 6.08448 6.28562 6.55822 6.78555 6.79309 6.95699 7.26562 8.10361 8.45590 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.003221 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.460928 B = 8690.607298 C = 9882.115288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.469 4.469 8 H 0.090 0.910 9 C 0.245 3.755 10 C -0.309 4.309 11 C -0.052 4.052 12 C -0.330 4.330 13 C 0.345 3.655 14 N -0.637 5.637 15 C 0.522 3.478 16 O -0.535 6.535 17 C -0.190 4.190 18 C 0.008 3.992 19 C 0.033 3.967 20 C -0.182 4.182 21 C -0.109 4.109 22 C -0.098 4.098 23 C 0.572 3.428 24 O -0.523 6.523 25 O -0.505 6.505 26 O -0.134 6.134 27 N -0.532 5.532 28 H 0.280 0.720 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.148 0.852 32 H 0.417 0.583 33 H 0.188 0.812 34 H 0.227 0.773 35 H 0.206 0.794 36 H 0.182 0.818 37 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.808 -8.755 -0.174 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.501 4.501 8 H 0.108 0.892 9 C 0.118 3.882 10 C -0.332 4.332 11 C -0.077 4.077 12 C -0.354 4.354 13 C 0.109 3.891 14 N -0.281 5.281 15 C 0.313 3.687 16 O -0.414 6.414 17 C -0.211 4.211 18 C -0.010 4.010 19 C -0.020 4.020 20 C -0.201 4.201 21 C -0.128 4.128 22 C -0.149 4.149 23 C 0.419 3.581 24 O -0.416 6.416 25 O -0.319 6.319 26 O -0.028 6.028 27 N -0.252 5.252 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.142 0.858 31 H 0.165 0.835 32 H 0.254 0.746 33 H 0.205 0.795 34 H 0.243 0.757 35 H 0.223 0.777 36 H 0.199 0.801 37 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -15.142 -8.445 -0.399 17.342 hybrid contribution 1.676 -0.165 0.506 1.758 sum -13.465 -8.610 0.106 15.983 Atomic orbital electron populations 1.70181 1.08711 1.29137 1.29396 1.26937 0.95835 1.04291 0.92430 0.85175 0.78629 0.75436 0.79891 1.18610 1.18998 1.18477 1.19907 0.94772 0.90223 1.45193 0.89240 1.18668 0.87297 0.93320 0.88868 1.21888 0.99422 0.93562 1.18311 1.21176 0.93999 0.97311 0.95211 1.22322 0.95192 0.98487 1.19443 1.18926 0.84964 0.90753 0.94420 1.43138 1.03942 1.16090 1.64909 1.19374 0.90075 0.82440 0.76794 1.90651 1.71720 1.29943 1.49066 1.23443 0.89673 1.02992 1.04956 1.22391 1.01069 0.84629 0.92932 1.22139 0.87459 0.97533 0.94888 1.22641 1.04075 0.88979 1.04382 1.22415 0.93195 1.02362 0.94872 1.21332 1.02568 0.82476 1.08534 1.19121 0.79123 0.83729 0.76172 1.90929 1.71359 1.14757 1.64525 1.84734 1.45189 1.44833 1.57154 1.84395 1.41151 1.24128 1.53086 1.68105 1.08381 1.25671 1.23035 0.90938 0.87170 0.85842 0.83533 0.74646 0.79526 0.75667 0.77656 0.80111 0.70245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.28 11.46 21.84 0.25 -39.03 16 2 C 0.03 1.37 5.50 85.29 0.47 1.83 16 3 Si 0.99 37.61 29.56 68.60 2.03 39.64 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 6 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 7 C -0.47 -25.78 9.14 23.46 0.21 -25.57 16 8 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 9 C 0.25 14.07 6.55 40.20 0.26 14.33 16 10 C -0.31 -16.25 9.83 22.87 0.22 -16.03 16 11 C -0.05 -2.59 10.15 22.40 0.23 -2.36 16 12 C -0.33 -16.86 8.95 22.73 0.20 -16.66 16 13 C 0.34 17.67 7.54 133.29 1.01 18.68 16 14 N -0.64 -25.72 5.40 -312.30 -1.69 -27.40 16 15 C 0.52 18.35 7.27 86.35 0.63 18.98 16 16 O -0.53 -22.29 9.32 19.34 0.18 -22.11 16 17 C -0.19 -3.95 10.04 23.69 0.24 -3.71 16 18 C 0.01 0.13 10.09 23.69 0.24 0.37 16 19 C 0.03 0.77 5.96 24.35 0.15 0.91 16 20 C -0.18 -3.28 10.88 22.61 0.25 -3.03 16 21 C -0.11 -2.48 10.64 22.54 0.24 -2.24 16 22 C -0.10 -2.94 7.21 24.42 0.18 -2.77 16 23 C 0.57 17.49 8.32 70.07 0.58 18.07 16 24 O -0.52 -16.73 17.65 19.58 0.35 -16.39 16 25 O -0.51 -14.35 13.44 -56.42 -0.76 -15.11 16 26 O -0.13 -4.33 7.46 16.03 0.12 -4.21 16 27 N -0.53 -30.04 7.89 -186.43 -1.47 -31.51 16 28 H 0.28 13.06 8.29 -92.70 -0.77 12.29 16 29 H 0.11 5.31 8.06 -2.91 -0.02 5.29 16 30 H 0.12 5.24 8.06 -2.91 -0.02 5.22 16 31 H 0.15 7.49 4.92 -30.87 -0.15 7.34 16 32 H 0.42 14.81 8.80 -92.71 -0.82 13.99 16 33 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.23 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.21 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.44 7.45 9.11 -74.06 -0.67 6.78 16 Total: -1.00 -82.30 338.89 3.65 -78.65 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.45 Total: 36.66 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 5.10 Total: 0.82 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -2.91 Total: -97.95 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -0.11 Total: -57.82 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -82.30 3.65 -78.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605601434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.778 kcal (2) G-P(sol) polarization free energy of solvation -82.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds