Wall clock time and date at job start Tue Mar 31 2020 15:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86796 * 120.00167 * 2 1 4 4 H 1.48507 * 109.47108 * 240.00351 * 3 2 1 5 5 H 1.48502 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47326 * 120.00773 * 3 2 1 7 7 C 1.40031 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.41322 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.40622 * 119.78802 * 180.02562 * 9 7 2 11 11 C 1.38308 * 119.13659 * 180.02562 * 10 9 7 12 12 C 1.38677 * 118.67656 * 359.97438 * 11 10 9 13 13 C 1.39673 * 119.49539 * 359.97438 * 12 11 10 14 14 N 1.39118 * 119.58433 * 180.02562 * 13 12 11 15 15 C 1.34776 * 120.00262 * 185.33169 * 14 13 12 16 16 O 1.21704 * 119.99809 * 354.84490 * 15 14 13 17 17 C 1.46330 * 119.99812 * 174.85222 * 15 14 13 18 18 C 1.35279 * 119.99776 * 179.97438 * 17 15 14 19 19 C 1.46330 * 119.99776 * 179.97438 * 18 17 15 20 20 C 1.38123 * 125.81341 * 179.97438 * 19 18 17 21 21 C 1.39763 * 106.84731 * 179.78667 * 20 19 18 22 22 C 1.37811 * 106.88999 * 0.37898 * 21 20 19 23 23 C 1.46836 * 125.77730 * 179.88380 * 22 21 20 24 24 O 1.21571 * 119.99737 * 359.71067 * 23 22 21 25 25 O 1.34873 * 119.99770 * 179.71382 * 23 22 21 26 26 O 1.34554 * 125.81674 * 0.02924 * 19 18 17 27 27 N 1.31960 * 120.84119 * 0.27900 * 13 12 11 28 28 H 0.97003 * 119.99697 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.42952 * 0.02562 * 10 9 7 30 30 H 1.08007 * 120.66323 * 179.97438 * 11 10 9 31 31 H 1.08007 * 120.25623 * 180.02562 * 12 11 10 32 32 H 0.97002 * 119.99825 * 5.32450 * 14 13 12 33 33 H 1.08000 * 120.00425 * 359.97438 * 17 15 14 34 34 H 1.08000 * 119.99794 * 0.02562 * 18 17 15 35 35 H 1.07994 * 126.57726 * 0.02580 * 20 19 18 36 36 H 1.07996 * 126.55083 * 180.23272 * 21 20 19 37 37 H 0.96700 * 116.99701 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2126 5 1 1.2765 2.7464 0.0006 6 1 3.0954 1.6963 1.2124 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0084 -3.6518 -0.0005 11 6 1.3033 -4.8416 -0.0011 12 6 -0.0827 -4.7938 -0.0011 13 6 -0.7280 -3.5551 0.0000 14 7 -2.1183 -3.5049 0.0006 15 6 -2.7499 -2.3192 -0.1068 16 8 -2.1074 -1.2856 -0.1098 17 6 -4.2082 -2.2747 -0.2196 18 6 -4.8422 -1.0845 -0.3269 19 6 -6.3004 -1.0400 -0.4403 20 6 -7.0677 0.1028 -0.5549 21 6 -8.3999 -0.3107 -0.6413 22 6 -8.3976 -1.6868 -0.5677 23 6 -9.5837 -2.5511 -0.6157 24 8 -10.6901 -2.0592 -0.7243 25 8 -9.4456 -3.8905 -0.5392 26 8 -7.1224 -2.1052 -0.4497 27 7 -0.0358 -2.4316 -0.0045 28 1 -0.4850 0.8401 0.0004 29 1 3.0884 -3.6560 -0.0001 30 1 1.8217 -5.7892 -0.0015 31 1 -0.6587 -5.7074 -0.0011 32 1 -2.6331 -4.3234 0.0782 33 1 -4.7783 -3.1919 -0.2173 34 1 -4.2720 -0.1673 -0.3297 35 1 -6.7070 1.1205 -0.5777 36 1 -9.2658 0.3266 -0.7435 37 1 -10.2552 -4.4181 -0.5754 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605601435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:45 Heat of formation + Delta-G solvation = -28.858136 kcal Electronic energy + Delta-G solvation = -25792.286923 eV Core-core repulsion = 21696.109059 eV Total energy + Delta-G solvation = -4096.177865 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.91165 -40.27692 -39.37759 -37.59479 -36.58333 -34.36705 -33.79410 -33.36253 -33.05248 -30.38021 -29.92041 -28.93388 -25.90255 -25.25588 -23.24205 -22.05864 -21.66019 -21.21046 -20.37141 -19.13302 -18.76005 -17.96521 -17.73516 -16.88886 -16.72898 -16.23656 -15.54280 -15.41026 -14.67958 -14.47587 -14.26162 -14.11058 -13.89733 -13.60619 -13.48915 -13.43091 -12.96751 -12.63866 -12.17847 -12.15782 -12.05847 -11.93900 -11.37105 -11.18185 -10.99676 -10.70171 -10.69524 -10.50371 -10.27348 -9.99080 -9.72832 -9.21040 -9.05718 -8.36406 -8.00520 -7.28558 -7.01435 -6.18276 -4.43360 0.08558 1.19930 1.99625 2.37261 2.52369 2.83258 2.83665 3.09838 3.14203 3.16488 3.25334 3.68295 4.03132 4.03632 4.39335 4.47708 4.77060 4.89710 5.05653 5.16649 5.21569 5.35792 5.60161 5.79584 5.93117 5.99084 6.01537 6.08192 6.21373 6.45407 6.57448 6.64339 6.80083 6.81403 7.19457 7.39999 7.50889 7.57362 7.77859 7.99896 8.15088 8.40450 8.68688 9.00312 9.12851 10.19223 10.44221 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.002665 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.192982 B =10502.834213 C =12213.921611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.658 5.658 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.424 4.424 8 H 0.082 0.918 9 C 0.270 3.730 10 C -0.303 4.303 11 C -0.037 4.037 12 C -0.355 4.355 13 C 0.370 3.630 14 N -0.658 5.658 15 C 0.496 3.504 16 O -0.401 6.401 17 C -0.145 4.145 18 C -0.045 4.045 19 C 0.072 3.928 20 C -0.201 4.201 21 C -0.096 4.096 22 C -0.078 4.078 23 C 0.574 3.426 24 O -0.498 6.498 25 O -0.504 6.504 26 O -0.142 6.142 27 N -0.473 5.473 28 H 0.272 0.728 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.401 0.599 33 H 0.127 0.873 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.539 -2.295 -0.820 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.277 5.277 2 C -0.171 4.171 3 Si 0.722 3.278 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.454 4.454 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.327 4.327 11 C -0.061 4.061 12 C -0.381 4.381 13 C 0.131 3.869 14 N -0.305 5.305 15 C 0.279 3.721 16 O -0.266 6.266 17 C -0.166 4.166 18 C -0.065 4.065 19 C 0.019 3.981 20 C -0.220 4.220 21 C -0.116 4.116 22 C -0.129 4.129 23 C 0.419 3.581 24 O -0.388 6.388 25 O -0.315 6.315 26 O -0.037 6.037 27 N -0.192 5.192 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.235 0.765 33 H 0.145 0.855 34 H 0.187 0.813 35 H 0.186 0.814 36 H 0.185 0.815 37 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -16.591 -0.464 -0.840 16.619 hybrid contribution -0.116 -0.995 0.000 1.002 sum -16.706 -1.460 -0.839 16.791 Atomic orbital electron populations 1.70311 1.05810 1.27474 1.24065 1.26174 0.95153 1.00615 0.95149 0.86557 0.80199 0.81372 0.79674 1.19181 1.20367 1.19187 1.19552 0.94072 0.89366 1.42456 0.89961 1.18385 0.87143 0.91991 0.87959 1.21636 0.98602 0.93516 1.18906 1.20567 0.93181 0.96573 0.95754 1.20499 0.94828 0.94933 1.27853 1.18572 0.83126 0.91041 0.94119 1.43232 1.05331 1.09069 1.72835 1.18401 0.87016 0.85390 0.81246 1.91288 1.65204 1.30637 1.39503 1.23577 0.95631 0.98576 0.98823 1.21566 0.85660 1.00556 0.98685 1.21600 0.91232 0.84251 1.01014 1.22246 0.91802 0.99705 1.08214 1.22119 0.98784 0.92104 0.98598 1.20913 0.81667 0.92468 1.17828 1.18892 0.86028 0.80627 0.72584 1.90992 1.25032 1.75840 1.46933 1.84677 1.43196 1.18558 1.85103 1.84149 1.15323 1.34889 1.69363 1.68705 1.07081 1.23184 1.20261 0.91584 0.88512 0.88561 0.89008 0.76478 0.85504 0.81291 0.81351 0.81494 0.72152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.62 8.98 55.55 0.50 -17.12 16 2 C 0.06 1.49 5.50 -17.34 -0.10 1.40 16 3 Si 0.90 18.80 29.56 -169.99 -5.02 13.78 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.42 -11.46 9.14 -37.74 -0.34 -11.80 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.66 16 9 C 0.27 7.48 6.55 -85.00 -0.56 6.93 16 10 C -0.30 -7.54 9.83 -38.66 -0.38 -7.92 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.36 -7.84 9.95 -38.88 -0.39 -8.23 16 13 C 0.37 8.83 7.42 -155.08 -1.15 7.68 16 14 N -0.66 -12.55 5.37 -12.70 -0.07 -12.62 16 15 C 0.50 9.50 7.70 -13.01 -0.10 9.40 16 16 O -0.40 -9.49 11.98 5.19 0.06 -9.43 16 17 C -0.14 -2.02 9.67 -37.38 -0.36 -2.38 16 18 C -0.05 -0.58 9.64 -37.38 -0.36 -0.94 16 19 C 0.07 0.83 7.02 -36.37 -0.26 0.58 16 20 C -0.20 -1.96 10.88 -39.05 -0.42 -2.38 16 21 C -0.10 -0.94 10.64 -39.17 -0.42 -1.35 16 22 C -0.08 -0.87 7.21 -36.26 -0.26 -1.13 16 23 C 0.57 5.92 8.32 34.21 0.28 6.21 16 24 O -0.50 -5.96 17.65 -19.32 -0.34 -6.30 16 25 O -0.50 -3.97 13.44 -42.47 -0.57 -4.54 16 26 O -0.14 -1.72 10.29 3.55 0.04 -1.69 16 27 N -0.47 -13.02 5.73 -10.28 -0.06 -13.08 16 28 H 0.27 6.78 8.29 -40.82 -0.34 6.45 16 29 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 30 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 31 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.40 5.83 8.68 -40.82 -0.35 5.48 16 33 H 0.13 1.45 7.78 -52.49 -0.41 1.04 16 34 H 0.17 2.19 7.53 -52.49 -0.39 1.80 16 35 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.42 1.07 9.11 45.56 0.42 1.49 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -34.56 343.47 -7.90 -42.47 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -2.40 Total: 8.50 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -5.21 Total: -5.15 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.37 Total: -42.82 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.81 Total: -21.96 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.56 -7.90 -42.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605601435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.610 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds