Wall clock time and date at job start Tue Mar 31 2020 14:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 119.99968 * 2 1 4 4 H 1.48493 * 109.47649 * 274.66717 * 3 2 1 5 5 H 1.48504 * 109.47228 * 34.67310 * 3 2 1 6 6 H 1.48507 * 109.46682 * 154.66566 * 3 2 1 7 7 C 1.39938 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00372 * 162.22683 * 7 2 1 9 9 C 1.41394 * 120.00075 * 342.22848 * 7 2 1 10 10 C 1.40716 * 120.24691 * 155.28951 * 9 7 2 11 11 C 1.37622 * 119.74836 * 180.02562 * 10 9 7 12 12 C 1.38629 * 120.24629 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75011 * 179.97438 * 12 11 10 14 14 O 1.45200 * 109.47332 * 89.99799 * 13 12 11 15 15 C 1.34663 * 116.99785 * 180.02562 * 14 13 12 16 16 O 1.21407 * 120.00141 * 359.97438 * 15 14 13 17 17 C 1.48231 * 119.99688 * 179.97438 * 15 14 13 18 18 C 1.39715 * 119.99843 * 179.97438 * 17 15 14 19 19 N 1.31794 * 119.99323 * 179.97438 * 18 17 15 20 20 C 1.32969 * 120.00370 * 359.97438 * 19 18 17 21 21 C 1.48228 * 119.99815 * 179.97438 * 20 19 18 22 22 O 1.21405 * 120.00080 * 179.97438 * 21 20 19 23 23 O 1.34665 * 120.00096 * 359.73211 * 21 20 19 24 24 C 1.39666 * 120.00212 * 0.25818 * 20 19 18 25 25 N 1.31824 * 119.99765 * 359.47214 * 24 20 19 26 26 C 1.38639 * 120.50443 * 0.24748 * 12 11 10 27 27 C 1.37623 * 120.24363 * 359.45384 * 26 12 11 28 28 H 0.97004 * 119.99716 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.12727 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.87446 * 179.97438 * 11 10 9 31 31 H 1.09001 * 109.46696 * 329.99890 * 13 12 11 32 32 H 1.08998 * 109.47242 * 209.99952 * 13 12 11 33 33 H 1.07992 * 120.00171 * 0.02562 * 18 17 15 34 34 H 0.96703 * 116.99868 * 180.26943 * 23 21 20 35 35 H 1.08000 * 120.00138 * 179.73851 * 24 20 19 36 36 H 1.07997 * 119.87844 * 179.69990 * 26 12 11 37 37 H 1.08003 * 120.12511 * 180.27282 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1034 -1.3953 5 1 1.4926 2.6222 0.7965 6 1 3.5857 1.4136 0.5991 7 6 2.0079 -1.2119 -0.0005 8 1 3.0493 -1.2342 -0.2860 9 6 1.3515 -2.4074 0.3727 10 6 1.8216 -3.6493 -0.0930 11 6 1.1746 -4.8064 0.2763 12 6 0.0633 -4.7516 1.1033 13 6 -0.6370 -6.0256 1.5001 14 8 -0.0503 -6.5391 2.7251 15 6 -0.5658 -7.6814 3.2177 16 8 -1.4804 -8.2333 2.6406 17 6 -0.0166 -8.2651 4.4647 18 6 -0.5518 -9.4500 4.9762 19 7 -0.0631 -9.9691 6.0846 20 6 0.9395 -9.3655 6.7158 21 6 1.4887 -9.9492 7.9628 22 8 2.4045 -9.3983 8.5389 23 8 0.9687 -11.0878 8.4593 24 6 1.4713 -8.1784 6.2072 25 7 0.9861 -7.6620 5.0956 26 6 -0.4120 -3.5333 1.5635 27 6 0.2229 -2.3640 1.2120 28 1 -0.4850 0.8401 0.0004 29 1 2.6870 -3.6942 -0.7377 30 1 1.5334 -5.7606 -0.0802 31 1 -0.5251 -6.7641 0.7063 32 1 -1.6958 -5.8231 1.6615 33 1 -1.3653 -9.9409 4.4629 34 1 1.3572 -11.4280 9.2769 35 1 2.2829 -7.6859 6.7222 36 1 -1.2815 -3.5020 2.2033 37 1 -0.1465 -1.4163 1.5751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605601463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:40 Heat of formation + Delta-G solvation = -99.445555 kcal Electronic energy + Delta-G solvation = -25266.487553 eV Core-core repulsion = 21167.248788 eV Total energy + Delta-G solvation = -4099.238765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02294 -40.53182 -39.88445 -37.73552 -36.72935 -36.31933 -35.11556 -33.89796 -32.58250 -30.84614 -29.40003 -27.88454 -26.85412 -25.27260 -24.09473 -23.08011 -21.60319 -21.11808 -20.11344 -19.31454 -18.44732 -18.06141 -17.65285 -17.41932 -16.76038 -16.64306 -16.22422 -15.57118 -15.42299 -15.04918 -14.91130 -14.34097 -13.90919 -13.77871 -13.62190 -12.87775 -12.56881 -12.51075 -12.30492 -12.15989 -12.05914 -11.89553 -11.60536 -11.56610 -11.33316 -11.15877 -10.96689 -10.68389 -10.58307 -10.30270 -10.15716 -9.86615 -9.71403 -9.49996 -9.23952 -7.58957 -7.48765 -6.89946 -4.48921 -0.71033 0.40378 1.53432 2.03712 2.23800 2.30060 2.77399 2.98799 3.01466 3.05128 3.13280 3.18157 3.35640 3.55640 3.70312 3.83982 4.28605 4.44553 4.63065 4.80089 4.95392 5.49632 5.52774 5.57433 5.62106 5.77714 5.98059 6.20792 6.28160 6.32794 6.52205 6.84741 6.87344 6.94895 7.15116 7.23406 7.26493 7.48984 7.65003 7.74421 7.93455 7.97297 8.16563 8.51229 8.75932 8.83979 10.04074 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.002163 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.666998 B =12943.096422 C =13911.780650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.120 3.880 10 C -0.230 4.230 11 C -0.061 4.061 12 C -0.238 4.238 13 C 0.133 3.867 14 O -0.321 6.321 15 C 0.516 3.484 16 O -0.495 6.495 17 C 0.087 3.913 18 C 0.108 3.892 19 N -0.387 5.387 20 C 0.058 3.942 21 C 0.550 3.450 22 O -0.492 6.492 23 O -0.490 6.490 24 C 0.118 3.882 25 N -0.379 5.379 26 C -0.073 4.073 27 C -0.171 4.171 28 H 0.283 0.717 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.198 0.802 34 H 0.418 0.582 35 H 0.197 0.803 36 H 0.089 0.911 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -15.722 12.323 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.250 4.250 11 C -0.079 4.079 12 C -0.239 4.239 13 C 0.062 3.938 14 O -0.235 6.235 15 C 0.357 3.643 16 O -0.383 6.383 17 C -0.054 4.054 18 C -0.054 4.054 19 N -0.104 5.104 20 C -0.083 4.083 21 C 0.390 3.610 22 O -0.378 6.378 23 O -0.300 6.300 24 C -0.043 4.043 25 N -0.096 5.096 26 C -0.092 4.092 27 C -0.190 4.190 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.215 0.785 34 H 0.278 0.722 35 H 0.213 0.787 36 H 0.107 0.893 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.756 -15.369 11.887 19.445 hybrid contribution 0.460 0.535 0.396 0.810 sum -0.296 -14.834 12.284 19.262 Atomic orbital electron populations 1.69825 1.07697 1.29566 1.33844 1.25983 0.94779 1.01597 0.92055 0.86271 0.80818 0.80373 0.79172 1.19446 1.19899 1.18265 1.19685 0.98241 0.91221 1.39150 0.90114 1.17697 0.90734 0.92098 0.87751 1.20953 1.03942 0.92790 1.07308 1.20382 0.94174 0.96639 0.96734 1.18591 1.03602 0.91248 1.10502 1.21926 0.96237 0.94148 0.81516 1.86909 1.58638 1.35564 1.42378 1.20454 0.80406 0.80524 0.82936 1.90854 1.27546 1.61349 1.58548 1.21868 0.94278 0.94067 0.95222 1.23985 0.98540 0.91807 0.91068 1.68659 1.06634 1.29372 1.05701 1.21398 0.96169 0.95263 0.95430 1.20089 0.79437 0.78585 0.82897 1.90963 1.27476 1.60790 1.58600 1.84656 1.61637 1.38865 1.44834 1.24062 0.98063 0.91185 0.91029 1.68845 1.06619 1.28951 1.05174 1.20532 0.98054 0.92546 0.98019 1.21293 0.99418 0.96759 1.01517 0.90606 0.88668 0.89263 0.91565 0.91483 0.78544 0.72224 0.78665 0.89285 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.57 10.97 55.55 0.61 -18.96 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 7 C -0.45 -11.66 9.05 -37.75 -0.34 -12.00 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.12 3.11 5.57 -106.82 -0.60 2.52 16 10 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 11 C -0.06 -1.34 9.67 -39.66 -0.38 -1.72 16 12 C -0.24 -5.12 5.54 -104.33 -0.58 -5.70 16 13 C 0.13 2.40 5.59 36.01 0.20 2.60 16 14 O -0.32 -5.67 10.03 -40.39 -0.41 -6.07 16 15 C 0.52 7.75 7.96 34.84 0.28 8.03 16 16 O -0.49 -7.73 16.13 -19.19 -0.31 -8.04 16 17 C 0.09 1.09 6.76 -82.73 -0.56 0.53 16 18 C 0.11 1.09 10.77 -17.02 -0.18 0.91 16 19 N -0.39 -3.95 10.27 -9.30 -0.10 -4.05 16 20 C 0.06 0.56 6.76 -82.74 -0.56 0.00 16 21 C 0.55 4.72 8.33 34.84 0.29 5.01 16 22 O -0.49 -5.03 17.13 -19.19 -0.33 -5.36 16 23 O -0.49 -3.06 13.26 -40.40 -0.54 -3.60 16 24 C 0.12 1.19 10.77 -17.02 -0.18 1.01 16 25 N -0.38 -4.88 10.27 -9.30 -0.10 -4.98 16 26 C -0.07 -1.67 9.67 -39.66 -0.38 -2.05 16 27 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 28 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 29 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 30 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 32 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.20 1.56 7.64 -52.49 -0.40 1.16 16 34 H 0.42 0.47 9.11 45.56 0.42 0.88 16 35 H 0.20 1.55 7.64 -52.49 -0.40 1.15 16 36 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.12 3.10 6.18 -52.48 -0.32 2.78 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -30.45 346.13 -7.15 -37.60 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -2.37 Total: 4.98 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -3.81 Total: -9.68 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.42 Total: -27.99 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -1.58 Total: -23.07 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.45 -7.15 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605601463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.850 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds