Wall clock time and date at job start Tue Mar 31 2020 15:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86798 * 120.00234 * 2 1 4 4 H 1.48501 * 109.47112 * 274.99394 * 3 2 1 5 5 H 1.48506 * 109.47017 * 34.99153 * 3 2 1 6 6 H 1.48499 * 109.47525 * 154.99262 * 3 2 1 7 7 C 1.39165 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99715 * 191.06946 * 7 2 1 9 9 N 1.36703 * 119.99776 * 11.06633 * 7 2 1 10 10 C 1.34773 * 120.00160 * 15.07022 * 9 7 2 11 11 O 1.21712 * 120.00060 * 62.95339 * 10 9 7 12 12 C 1.46699 * 119.99903 * 242.95610 * 10 9 7 13 13 C 1.37987 * 125.77880 * 185.56175 * 12 10 9 14 14 C 1.39628 * 106.90752 * 179.70707 * 13 12 10 15 15 C 1.38254 * 106.86532 * 0.41496 * 14 13 12 16 16 C 1.46138 * 125.81868 * 179.84550 * 15 14 13 17 17 C 1.35502 * 119.99826 * 224.45263 * 16 15 14 18 18 C 1.41796 * 120.00064 * 7.26571 * 17 16 15 19 19 O 1.21655 * 119.99547 * 6.30575 * 18 17 16 20 20 O 1.34949 * 119.99897 * 186.30896 * 18 17 16 21 21 O 1.34634 * 108.35812 * 359.58225 * 15 14 13 22 22 C 1.39322 * 119.99653 * 195.07211 * 9 7 2 23 23 C 1.39091 * 119.69883 * 190.02392 * 22 9 7 24 24 C 1.38379 * 119.09814 * 179.75646 * 23 22 9 25 25 C 1.38823 * 118.49241 * 0.50366 * 24 23 22 26 26 C 1.38158 * 119.31638 * 359.73432 * 25 24 23 27 27 N 1.31876 * 120.85187 * 0.02562 * 26 25 24 28 28 H 0.97001 * 120.00305 * 4.99286 * 1 2 3 29 29 H 1.08000 * 126.54787 * 0.02562 * 13 12 10 30 30 H 1.08000 * 126.56827 * 180.27981 * 14 13 12 31 31 H 1.07996 * 120.00153 * 44.45705 * 16 15 14 32 32 H 1.08006 * 119.99759 * 187.54124 * 17 16 15 33 33 H 0.96705 * 113.99873 * 185.02191 * 20 18 17 34 34 H 1.08001 * 120.44897 * 359.96989 * 23 22 9 35 35 H 1.07999 * 120.75415 * 180.23855 * 24 23 22 36 36 H 1.08003 * 120.34579 * 179.71357 * 25 24 23 37 37 H 1.08001 * 119.57497 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3886 2.1073 -1.3948 5 1 1.5008 2.6199 0.8029 6 1 3.5929 1.4120 0.5918 7 6 2.0084 -1.2052 0.0005 8 1 3.0733 -1.2138 0.1801 9 7 1.3439 -2.3782 -0.2262 10 6 0.0998 -2.3587 -0.7442 11 8 -0.0883 -1.9075 -1.8589 12 6 -1.0276 -2.8811 0.0355 13 6 -2.3247 -3.0192 -0.4146 14 6 -3.0656 -3.5562 0.6400 15 6 -2.1940 -3.7180 1.7010 16 6 -2.5390 -4.2493 3.0179 17 6 -2.0809 -3.6373 4.1366 18 6 -1.3982 -2.3984 4.0380 19 8 -1.3237 -1.8287 2.9657 20 8 -0.8311 -1.8515 5.1337 21 8 -0.9720 -3.3079 1.3121 22 6 1.9527 -3.5937 0.0783 23 6 1.3666 -4.7827 -0.3431 24 6 1.9847 -5.9827 -0.0382 25 6 3.1665 -5.9528 0.6895 26 6 3.6898 -4.7352 1.0801 27 7 3.0811 -3.6070 0.7708 28 1 -0.4850 0.8368 -0.0731 29 1 -2.6949 -2.7656 -1.3970 30 1 -4.1183 -3.7969 0.6297 31 1 -3.1590 -5.1298 3.0994 32 1 -2.2319 -4.0953 5.1030 33 1 -0.4559 -0.9726 4.9852 34 1 0.4436 -4.7693 -0.9036 35 1 1.5550 -6.9214 -0.3554 36 1 3.6716 -6.8718 0.9480 37 1 4.6093 -4.7071 1.6460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:08 Heat of formation + Delta-G solvation = -13.230651 kcal Electronic energy + Delta-G solvation = -28596.617085 eV Core-core repulsion = 24501.116878 eV Total energy + Delta-G solvation = -4095.500206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87831 -39.91663 -39.66011 -38.14541 -35.87541 -34.92938 -33.79542 -32.31823 -32.24944 -31.57244 -29.08747 -28.88813 -25.89002 -24.69613 -23.21524 -22.36567 -21.59459 -21.13096 -19.88813 -19.23105 -18.04383 -17.76854 -17.60512 -16.73297 -15.58173 -15.48950 -15.33153 -15.19743 -14.99285 -14.58104 -14.30540 -14.08333 -13.90914 -13.57521 -13.24255 -12.79845 -12.71547 -12.38701 -12.32896 -12.11918 -11.91082 -11.67485 -11.23735 -11.21421 -11.14714 -10.82038 -10.40777 -10.22046 -10.15482 -9.94483 -9.33891 -9.32410 -9.09491 -8.75418 -8.50242 -7.64398 -7.29180 -6.51623 -3.90919 0.61639 1.80613 2.06037 2.23712 2.85213 3.19361 3.20815 3.24940 3.27451 3.40886 3.59179 3.90020 3.95396 4.35619 4.63911 4.81488 5.11699 5.22763 5.34576 5.36413 5.42515 5.44480 5.58104 5.84636 5.88259 5.92704 6.06999 6.12677 6.25342 6.34900 6.43997 6.52743 6.74616 6.77991 6.91209 6.97511 7.30324 7.47165 7.57067 7.82138 8.21103 8.33803 8.69064 8.89094 9.14499 9.50029 10.58668 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.007069 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.290232 B = 3960.113580 C = 5006.242352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.027 3.973 3 Si 0.943 3.057 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.301 4.301 8 H 0.116 0.884 9 N -0.423 5.423 10 C 0.664 3.336 11 O -0.467 6.467 12 C 0.010 3.990 13 C -0.169 4.169 14 C -0.180 4.180 15 C -0.009 4.009 16 C 0.029 3.971 17 C -0.193 4.193 18 C 0.482 3.518 19 O -0.461 6.461 20 O -0.517 6.517 21 O -0.108 6.108 22 C 0.380 3.620 23 C -0.255 4.255 24 C -0.033 4.033 25 C -0.274 4.274 26 C 0.148 3.852 27 N -0.523 5.523 28 H 0.281 0.719 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.147 0.853 33 H 0.408 0.592 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -9.651 7.117 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.179 4.179 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.427 4.427 8 H 0.134 0.866 9 N -0.128 5.128 10 C 0.455 3.545 11 O -0.338 6.338 12 C -0.046 4.046 13 C -0.190 4.190 14 C -0.199 4.199 15 C -0.062 4.062 16 C 0.010 3.990 17 C -0.212 4.212 18 C 0.325 3.675 19 O -0.348 6.348 20 O -0.328 6.328 21 O 0.000 6.000 22 C 0.145 3.855 23 C -0.281 4.281 24 C -0.059 4.059 25 C -0.298 4.298 26 C -0.014 4.014 27 N -0.240 5.240 28 H 0.093 0.907 29 H 0.170 0.830 30 H 0.168 0.832 31 H 0.180 0.820 32 H 0.165 0.835 33 H 0.265 0.735 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.889 -8.414 6.679 11.803 hybrid contribution -0.114 0.716 -0.138 0.738 sum -5.003 -7.698 6.542 11.273 Atomic orbital electron populations 1.69104 1.05837 1.28955 1.45407 1.25426 0.95689 1.00513 0.96245 0.85640 0.79180 0.79973 0.78376 1.20133 1.20770 1.19015 1.19828 0.94312 0.80995 1.47552 0.86638 1.40796 1.13354 1.04312 1.54365 1.15849 0.80686 0.74618 0.83351 1.90660 1.84717 1.39881 1.18552 1.23008 0.96975 1.01646 0.83003 1.21839 0.91738 1.04476 1.00902 1.21875 0.99834 1.06124 0.92082 1.20778 0.85061 1.05137 0.95196 1.21711 0.93814 0.96147 0.87305 1.21560 1.03819 0.95428 1.00358 1.19849 0.78014 0.87456 0.82158 1.91232 1.53670 1.62369 1.27534 1.84981 1.70569 1.37858 1.39422 1.84299 1.30205 1.59280 1.26251 1.18282 0.90912 0.84993 0.91313 1.21205 1.03398 0.92594 1.10878 1.20997 0.93961 0.96648 0.94252 1.21482 1.00480 0.98729 1.09150 1.22321 0.97176 0.87335 0.94577 1.67171 1.10503 1.30339 1.16026 0.90701 0.83000 0.83236 0.81993 0.83502 0.73521 0.86894 0.86274 0.86493 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 10.60 55.51 0.59 -24.06 16 2 C 0.03 0.75 5.20 -17.45 -0.09 0.66 16 3 Si 0.94 21.62 29.57 -169.99 -5.03 16.59 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.53 9.35 -15.04 -0.14 -8.67 16 8 H 0.12 3.24 7.34 -52.49 -0.39 2.85 16 9 N -0.42 -11.57 2.77 -62.10 -0.17 -11.75 16 10 C 0.66 17.91 2.88 -12.85 -0.04 17.88 16 11 O -0.47 -13.42 16.86 5.18 0.09 -13.33 16 12 C 0.01 0.25 5.62 -36.26 -0.20 0.04 16 13 C -0.17 -3.46 10.64 -39.16 -0.42 -3.88 16 14 C -0.18 -3.05 10.88 -39.06 -0.42 -3.47 16 15 C -0.01 -0.17 5.34 -36.41 -0.19 -0.36 16 16 C 0.03 0.37 10.15 -37.39 -0.38 -0.01 16 17 C -0.19 -2.54 10.01 -39.20 -0.39 -2.93 16 18 C 0.48 8.32 7.92 32.09 0.25 8.58 16 19 O -0.46 -10.37 13.24 -27.53 -0.36 -10.73 16 20 O -0.52 -7.59 13.54 -41.18 -0.56 -8.15 16 21 O -0.11 -2.47 8.09 -20.82 -0.17 -2.64 16 22 C 0.38 9.36 7.06 -154.72 -1.09 8.26 16 23 C -0.25 -5.44 8.92 -39.21 -0.35 -5.79 16 24 C -0.03 -0.58 10.17 -39.31 -0.40 -0.98 16 25 C -0.27 -4.55 10.11 -39.39 -0.40 -4.95 16 26 C 0.15 2.76 11.18 -17.56 -0.20 2.57 16 27 N -0.52 -12.25 9.25 -12.35 -0.11 -12.36 16 28 H 0.28 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.15 2.89 8.06 -52.49 -0.42 2.47 16 30 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.15 1.36 8.06 -52.48 -0.42 0.93 16 33 H 0.41 4.97 8.98 45.56 0.41 5.38 16 34 H 0.11 2.39 6.51 -52.49 -0.34 2.05 16 35 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -36.80 338.20 -7.51 -44.31 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -2.41 Total: 10.09 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -4.46 Total: 6.94 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.30 Total: -48.17 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.00 Total: -34.86 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.80 -7.51 -44.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.078 kcal (2) G-P(sol) polarization free energy of solvation -36.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds