Wall clock time and date at job start Tue Mar 31 2020 15:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86798 * 120.00234 * 2 1 4 4 H 1.48501 * 109.47112 * 274.99394 * 3 2 1 5 5 H 1.48506 * 109.47017 * 34.99153 * 3 2 1 6 6 H 1.48499 * 109.47525 * 154.99262 * 3 2 1 7 7 C 1.39165 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99715 * 191.06946 * 7 2 1 9 9 N 1.36703 * 119.99776 * 11.06633 * 7 2 1 10 10 C 1.34773 * 120.00160 * 15.07022 * 9 7 2 11 11 O 1.21712 * 120.00060 * 62.95339 * 10 9 7 12 12 C 1.46699 * 119.99903 * 242.95610 * 10 9 7 13 13 C 1.37987 * 125.77880 * 185.56175 * 12 10 9 14 14 C 1.39628 * 106.90752 * 179.70707 * 13 12 10 15 15 C 1.38254 * 106.86532 * 0.41496 * 14 13 12 16 16 C 1.46138 * 125.81868 * 179.84550 * 15 14 13 17 17 C 1.35502 * 119.99826 * 224.45263 * 16 15 14 18 18 C 1.41796 * 120.00064 * 7.26571 * 17 16 15 19 19 O 1.21655 * 119.99547 * 6.30575 * 18 17 16 20 20 O 1.34949 * 119.99897 * 186.30896 * 18 17 16 21 21 O 1.34634 * 108.35812 * 359.58225 * 15 14 13 22 22 C 1.39322 * 119.99653 * 195.07211 * 9 7 2 23 23 C 1.39091 * 119.69883 * 190.02392 * 22 9 7 24 24 C 1.38379 * 119.09814 * 179.75646 * 23 22 9 25 25 C 1.38823 * 118.49241 * 0.50366 * 24 23 22 26 26 C 1.38158 * 119.31638 * 359.73432 * 25 24 23 27 27 N 1.31876 * 120.85187 * 0.02562 * 26 25 24 28 28 H 0.97001 * 120.00305 * 4.99286 * 1 2 3 29 29 H 1.08000 * 126.54787 * 0.02562 * 13 12 10 30 30 H 1.08000 * 126.56827 * 180.27981 * 14 13 12 31 31 H 1.07996 * 120.00153 * 44.45705 * 16 15 14 32 32 H 1.08006 * 119.99759 * 187.54124 * 17 16 15 33 33 H 0.96705 * 113.99873 * 185.02191 * 20 18 17 34 34 H 1.08001 * 120.44897 * 359.96989 * 23 22 9 35 35 H 1.07999 * 120.75415 * 180.23855 * 24 23 22 36 36 H 1.08003 * 120.34579 * 179.71357 * 25 24 23 37 37 H 1.08001 * 119.57497 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3886 2.1073 -1.3948 5 1 1.5008 2.6199 0.8029 6 1 3.5929 1.4120 0.5918 7 6 2.0084 -1.2052 0.0005 8 1 3.0733 -1.2138 0.1801 9 7 1.3439 -2.3782 -0.2262 10 6 0.0998 -2.3587 -0.7442 11 8 -0.0883 -1.9075 -1.8589 12 6 -1.0276 -2.8811 0.0355 13 6 -2.3247 -3.0192 -0.4146 14 6 -3.0656 -3.5562 0.6400 15 6 -2.1940 -3.7180 1.7010 16 6 -2.5390 -4.2493 3.0179 17 6 -2.0809 -3.6373 4.1366 18 6 -1.3982 -2.3984 4.0380 19 8 -1.3237 -1.8287 2.9657 20 8 -0.8311 -1.8515 5.1337 21 8 -0.9720 -3.3079 1.3121 22 6 1.9527 -3.5937 0.0783 23 6 1.3666 -4.7827 -0.3431 24 6 1.9847 -5.9827 -0.0382 25 6 3.1665 -5.9528 0.6895 26 6 3.6898 -4.7352 1.0801 27 7 3.0811 -3.6070 0.7708 28 1 -0.4850 0.8368 -0.0731 29 1 -2.6949 -2.7656 -1.3970 30 1 -4.1183 -3.7969 0.6297 31 1 -3.1590 -5.1298 3.0994 32 1 -2.2319 -4.0953 5.1030 33 1 -0.4559 -0.9726 4.9852 34 1 0.4436 -4.7693 -0.9036 35 1 1.5550 -6.9214 -0.3554 36 1 3.6716 -6.8718 0.9480 37 1 4.6093 -4.7071 1.6460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:08 Heat of formation + Delta-G solvation = -39.187555 kcal Electronic energy + Delta-G solvation = -28597.742660 eV Core-core repulsion = 24501.116878 eV Total energy + Delta-G solvation = -4096.625782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.38619 -41.53182 -41.10777 -39.90265 -37.16627 -36.78953 -35.01211 -34.19060 -33.79947 -33.17280 -30.72922 -30.39884 -27.61997 -26.22390 -24.80043 -23.94585 -23.13744 -22.57829 -21.52663 -20.54314 -19.65969 -19.38829 -19.09942 -18.16385 -17.32296 -17.07276 -16.96551 -16.67331 -16.50127 -16.40537 -15.83983 -15.56635 -15.33448 -14.91186 -14.86794 -14.22641 -14.11478 -13.95496 -13.84056 -13.81073 -13.58605 -13.17925 -13.02799 -12.83405 -12.69279 -12.54217 -12.18768 -11.97239 -11.64292 -11.27164 -11.09277 -10.78367 -10.73319 -10.60360 -10.13771 -9.15040 -9.02054 -8.49295 -5.98741 -0.59526 0.23281 0.50699 0.69649 1.29032 1.35755 1.45288 1.46989 1.75980 2.08478 2.17321 2.27784 2.47226 2.61010 2.88701 3.26910 3.57497 3.81206 3.93192 4.02083 4.16462 4.31781 4.34822 4.42332 4.45735 4.64369 4.67610 4.78947 4.81055 4.96014 5.03488 5.23118 5.24968 5.32113 5.46580 5.54879 5.57301 5.69981 6.03909 6.10599 6.44864 6.76054 6.94775 7.03566 7.33265 7.66044 8.58188 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.007069 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.290232 B = 3960.113580 C = 5006.242352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C -0.025 4.025 3 Si 1.006 2.994 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.324 4.324 8 H 0.104 0.896 9 N -0.456 5.456 10 C 0.666 3.334 11 O -0.520 6.520 12 C -0.040 4.040 13 C -0.167 4.167 14 C -0.176 4.176 15 C -0.007 4.007 16 C 0.038 3.962 17 C -0.191 4.191 18 C 0.473 3.527 19 O -0.525 6.525 20 O -0.509 6.509 21 O -0.133 6.133 22 C 0.356 3.644 23 C -0.268 4.268 24 C -0.025 4.025 25 C -0.240 4.240 26 C 0.131 3.869 27 N -0.560 5.560 28 H 0.273 0.727 29 H 0.154 0.846 30 H 0.200 0.800 31 H 0.229 0.771 32 H 0.197 0.803 33 H 0.416 0.584 34 H 0.104 0.896 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 -13.612 9.733 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.226 4.226 3 Si 0.828 3.172 4 H -0.201 1.201 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.451 4.451 8 H 0.121 0.879 9 N -0.165 5.165 10 C 0.460 3.540 11 O -0.396 6.396 12 C -0.095 4.095 13 C -0.188 4.188 14 C -0.194 4.194 15 C -0.059 4.059 16 C 0.020 3.980 17 C -0.209 4.209 18 C 0.320 3.680 19 O -0.416 6.416 20 O -0.321 6.321 21 O -0.026 6.026 22 C 0.124 3.876 23 C -0.294 4.294 24 C -0.051 4.051 25 C -0.262 4.262 26 C -0.029 4.029 27 N -0.279 5.279 28 H 0.085 0.915 29 H 0.172 0.828 30 H 0.217 0.783 31 H 0.245 0.755 32 H 0.214 0.786 33 H 0.274 0.726 34 H 0.122 0.878 35 H 0.184 0.816 36 H 0.188 0.812 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.290 -12.451 9.358 16.450 hybrid contribution 0.132 1.567 -0.745 1.740 sum -5.158 -10.884 8.613 14.807 Atomic orbital electron populations 1.69273 1.07050 1.28829 1.47603 1.26359 0.96540 1.03554 0.96123 0.84716 0.78300 0.75899 0.78276 1.20071 1.20106 1.17891 1.19850 0.94052 0.82476 1.48683 0.87865 1.40848 1.14217 1.04801 1.56682 1.16212 0.81340 0.73407 0.82997 1.90569 1.85509 1.42941 1.20600 1.22542 0.96988 1.05934 0.84063 1.22176 0.91251 1.03366 1.02006 1.22336 1.01657 1.05165 0.90287 1.22005 0.83814 1.02591 0.97534 1.22521 0.93699 0.97507 0.84225 1.22011 1.02458 0.93620 1.02843 1.20808 0.77193 0.88567 0.81457 1.91254 1.56364 1.64278 1.29698 1.84962 1.70101 1.38473 1.38525 1.84248 1.32706 1.59925 1.25763 1.18675 0.91464 0.85247 0.92223 1.21361 1.03582 0.93206 1.11233 1.21575 0.93802 0.96784 0.92901 1.22100 0.98999 0.99838 1.05299 1.23112 0.98188 0.87055 0.94512 1.67137 1.10712 1.33254 1.16748 0.91547 0.82826 0.78337 0.75491 0.78601 0.72631 0.87839 0.81647 0.81167 0.80348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.39 10.60 21.70 0.23 -55.16 16 2 C -0.02 -1.47 5.20 85.00 0.44 -1.03 16 3 Si 1.01 47.33 29.57 68.60 2.03 49.35 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.32 -19.87 9.35 84.16 0.79 -19.08 16 8 H 0.10 6.26 7.34 -2.91 -0.02 6.24 16 9 N -0.46 -26.86 2.77 -468.60 -1.30 -28.16 16 10 C 0.67 38.93 2.88 86.45 0.25 39.18 16 11 O -0.52 -32.87 16.86 -4.39 -0.07 -32.94 16 12 C -0.04 -2.03 5.62 24.42 0.14 -1.89 16 13 C -0.17 -7.12 10.64 22.55 0.24 -6.88 16 14 C -0.18 -5.70 10.88 22.61 0.25 -5.45 16 15 C -0.01 -0.24 5.34 24.33 0.13 -0.11 16 16 C 0.04 0.81 10.15 23.69 0.24 1.05 16 17 C -0.19 -4.31 10.01 22.52 0.23 -4.08 16 18 C 0.47 16.02 7.92 68.70 0.54 16.57 16 19 O -0.52 -24.45 13.24 27.12 0.36 -24.09 16 20 O -0.51 -14.58 13.54 -58.65 -0.79 -15.38 16 21 O -0.13 -6.27 8.09 13.50 0.11 -6.16 16 22 C 0.36 18.30 7.06 132.94 0.94 19.24 16 23 C -0.27 -11.58 8.92 22.51 0.20 -11.38 16 24 C -0.03 -0.80 10.17 22.44 0.23 -0.57 16 25 C -0.24 -6.83 10.11 22.39 0.23 -6.60 16 26 C 0.13 4.59 11.18 84.67 0.95 5.54 16 27 N -0.56 -26.75 9.25 -193.00 -1.78 -28.53 16 28 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 29 H 0.15 6.22 8.06 -2.91 -0.02 6.20 16 30 H 0.20 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.23 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.42 10.40 8.98 -74.05 -0.67 9.74 16 34 H 0.10 4.61 6.51 -2.91 -0.02 4.59 16 35 H 0.17 3.71 8.06 -2.91 -0.02 3.68 16 36 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 37 H 0.18 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -93.74 338.20 5.04 -88.71 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.48 Total: 27.86 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 5.78 Total: 24.49 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -2.85 Total: -111.85 kcal Atomic # 8 Polarization: -78.17 SS G_CDS: -0.40 Total: -78.57 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -93.74 5.04 -88.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.519 kcal (2) G-P(sol) polarization free energy of solvation -93.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds