Wall clock time and date at job start Tue Mar 31 2020 15:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48506 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47236 * 300.00129 * 3 2 1 6 6 H 1.48498 * 109.47168 * 60.00212 * 3 2 1 7 7 C 1.38641 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99515 * 179.97438 * 7 2 1 9 9 O 1.34812 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.35771 * 116.99811 * 174.96377 * 9 7 2 11 11 C 1.38919 * 119.99772 * 5.34609 * 10 9 7 12 12 C 1.37987 * 120.00604 * 180.02562 * 11 10 9 13 13 C 1.38953 * 119.99436 * 359.97438 * 12 11 10 14 14 N 1.39884 * 120.00335 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00184 * 35.13791 * 14 13 12 16 16 O 1.21531 * 119.99659 * 355.49205 * 15 14 13 17 17 C 1.48182 * 120.00492 * 175.49593 * 15 14 13 18 18 C 1.39671 * 119.65710 * 179.97438 * 17 15 14 19 19 C 1.38525 * 119.25255 * 179.97438 * 18 17 15 20 20 C 1.38593 * 118.55681 * 0.02562 * 19 18 17 21 21 C 1.39621 * 119.24877 * 0.02562 * 20 19 18 22 22 C 1.48125 * 119.65656 * 179.97438 * 21 20 19 23 23 O 1.21424 * 119.99968 * 359.97438 * 22 21 20 24 24 O 1.34673 * 120.00167 * 179.97438 * 22 21 20 25 25 N 1.32344 * 119.65146 * 359.97438 * 17 15 14 26 26 C 1.38952 * 119.99203 * 0.24683 * 13 12 11 27 27 C 1.37994 * 119.99562 * 359.54098 * 26 13 12 28 28 H 0.96994 * 119.99644 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99302 * 0.02562 * 11 10 9 30 30 H 1.07993 * 120.00481 * 179.97438 * 12 11 10 31 31 H 0.96998 * 120.00078 * 215.13503 * 14 13 12 32 32 H 1.08005 * 120.37126 * 359.97438 * 18 17 15 33 33 H 1.08000 * 120.72406 * 179.97438 * 19 18 17 34 34 H 1.08007 * 120.37647 * 180.02562 * 20 19 18 35 35 H 0.96698 * 116.99779 * 179.97438 * 24 22 21 36 36 H 1.08000 * 120.00086 * 179.74726 * 26 13 12 37 37 H 1.07995 * 119.99543 * 180.20861 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0890 -1.2006 -0.0010 9 8 1.3349 -2.3682 -0.0005 10 6 2.0703 -3.5045 -0.1073 11 6 3.4578 -3.4372 -0.0982 12 6 4.2054 -4.5919 -0.2072 13 6 3.5702 -5.8221 -0.3255 14 7 4.3278 -6.9927 -0.4366 15 6 5.4945 -7.1060 0.2287 16 8 5.9286 -6.1620 0.8591 17 6 6.2478 -8.3815 0.1916 18 6 7.4563 -8.4908 0.8833 19 6 8.1533 -9.6873 0.8434 20 6 7.6228 -10.7390 0.1132 21 6 6.4102 -10.5618 -0.5560 22 6 5.8353 -11.6796 -1.3395 23 8 6.4184 -12.7431 -1.3978 24 8 4.6659 -11.5165 -1.9872 25 7 5.7684 -9.4053 -0.4966 26 6 2.1823 -5.8887 -0.3392 27 6 1.4351 -4.7342 -0.2258 28 1 -0.4849 0.8400 0.0004 29 1 3.9514 -2.4810 -0.0058 30 1 5.2840 -4.5395 -0.2006 31 1 4.0136 -7.7229 -0.9924 32 1 7.8429 -7.6519 1.4430 33 1 9.0902 -9.7978 1.3691 34 1 8.1414 -11.6850 0.0623 35 1 4.3307 -12.2743 -2.4857 36 1 1.6885 -6.8444 -0.4353 37 1 0.3564 -4.7863 -0.2330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:40 Heat of formation + Delta-G solvation = -73.887449 kcal Electronic energy + Delta-G solvation = -25606.297039 eV Core-core repulsion = 21508.166557 eV Total energy + Delta-G solvation = -4098.130482 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.41672 -40.36684 -39.49872 -38.53533 -36.60562 -36.52289 -34.20618 -33.16282 -32.33462 -32.06502 -30.21645 -28.11842 -25.95379 -25.55398 -24.84379 -22.72569 -22.22390 -21.43323 -20.30330 -18.91473 -18.58625 -17.94797 -17.50119 -17.27315 -16.52926 -16.41477 -16.29644 -15.77252 -15.32213 -14.75661 -14.50519 -14.32463 -14.03499 -13.80628 -13.71928 -13.58140 -13.55471 -12.90767 -12.69645 -12.52431 -12.02397 -11.77199 -11.65613 -11.56801 -11.47325 -11.05116 -10.76655 -10.61639 -10.50253 -10.42134 -9.90875 -9.83978 -9.70910 -9.20558 -8.71375 -8.21844 -6.95732 -6.45495 -4.02684 -0.14570 0.32996 1.75507 2.11340 2.21176 2.31318 2.70334 3.00212 3.13787 3.15206 3.20815 3.45787 3.57970 3.97277 4.24165 4.33503 4.40263 4.48942 4.57098 4.88810 4.96382 5.09206 5.25762 5.36548 5.46180 5.67745 5.73270 5.84388 5.91217 6.11796 6.16677 6.30783 6.70260 6.80194 6.90999 7.00373 7.07648 7.28825 7.41480 7.42718 7.64071 7.75648 7.99812 8.22303 9.00386 9.69560 10.72410 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.002233 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.612085 B =12533.701109 C =13404.171559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.094 0.906 9 O -0.175 6.175 10 C 0.148 3.852 11 C -0.221 4.221 12 C -0.062 4.062 13 C 0.027 3.973 14 N -0.633 5.633 15 C 0.561 3.439 16 O -0.516 6.516 17 C 0.087 3.913 18 C -0.079 4.079 19 C -0.086 4.086 20 C -0.088 4.088 21 C 0.086 3.914 22 C 0.547 3.453 23 O -0.506 6.506 24 O -0.489 6.489 25 N -0.409 5.409 26 C -0.087 4.087 27 C -0.178 4.178 28 H 0.270 0.730 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.414 0.586 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.416 0.584 36 H 0.117 0.883 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.069 -21.604 -1.375 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.466 4.466 8 H 0.111 0.889 9 O -0.078 6.078 10 C 0.094 3.906 11 C -0.241 4.241 12 C -0.082 4.082 13 C -0.065 4.065 14 N -0.277 5.277 15 C 0.346 3.654 16 O -0.391 6.391 17 C -0.055 4.055 18 C -0.099 4.099 19 C -0.111 4.111 20 C -0.108 4.108 21 C -0.053 4.053 22 C 0.389 3.611 23 O -0.394 6.394 24 O -0.299 6.299 25 N -0.124 5.124 26 C -0.107 4.107 27 C -0.198 4.198 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.250 0.750 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.275 0.725 36 H 0.135 0.865 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.434 -20.590 -1.151 24.612 hybrid contribution 0.880 -0.256 -0.161 0.931 sum 14.314 -20.845 -1.312 25.321 Atomic orbital electron populations 1.70054 1.05956 1.27596 1.46056 1.25299 0.95857 0.98867 0.96543 0.85639 0.79214 0.80316 0.78238 1.19027 1.20145 1.20139 1.21400 0.91906 0.80776 1.52524 0.88899 1.83973 1.34333 1.11448 1.78092 1.19429 0.90285 0.88123 0.92740 1.21097 0.93551 0.98759 1.10709 1.20846 0.99787 0.90283 0.97280 1.17262 0.89987 0.85031 1.14228 1.42990 1.20583 1.17859 1.46248 1.17741 0.81752 0.85905 0.80049 1.90820 1.67745 1.37871 1.42712 1.21338 0.94402 0.93240 0.96520 1.22520 0.92990 0.99065 0.95361 1.21694 1.00467 0.91671 0.97295 1.22305 0.93984 1.00974 0.93514 1.19919 0.93923 0.91407 1.00027 1.20373 0.78666 0.85784 0.76299 1.90922 1.61046 1.27152 1.60282 1.84677 1.36691 1.47067 1.61505 1.67499 1.32152 0.98688 1.14044 1.20381 0.91326 0.97609 1.01385 1.19998 0.99542 0.89779 1.10444 0.92054 0.85110 0.85664 0.74995 0.82158 0.82576 0.82583 0.72507 0.86517 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.17 13.67 55.48 0.76 -24.41 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.39 -10.88 9.48 30.88 0.29 -10.59 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 9 O -0.18 -4.97 9.75 0.03 0.00 -4.97 16 10 C 0.15 3.58 6.65 -39.08 -0.26 3.32 16 11 C -0.22 -4.94 9.16 -39.42 -0.36 -5.30 16 12 C -0.06 -1.24 8.69 -39.41 -0.34 -1.58 16 13 C 0.03 0.49 6.30 -83.65 -0.53 -0.04 16 14 N -0.63 -9.29 5.32 -10.58 -0.06 -9.35 16 15 C 0.56 8.18 7.65 -12.18 -0.09 8.09 16 16 O -0.52 -8.95 13.75 5.34 0.07 -8.88 16 17 C 0.09 0.98 6.75 -83.03 -0.56 0.42 16 18 C -0.08 -0.67 9.63 -38.94 -0.38 -1.05 16 19 C -0.09 -0.50 10.16 -39.34 -0.40 -0.90 16 20 C -0.09 -0.60 9.63 -38.93 -0.38 -0.97 16 21 C 0.09 0.80 6.75 -83.05 -0.56 0.24 16 22 C 0.55 4.89 8.32 34.79 0.29 5.18 16 23 O -0.51 -5.28 17.11 -19.21 -0.33 -5.61 16 24 O -0.49 -3.50 13.24 -40.42 -0.54 -4.04 16 25 N -0.41 -4.42 9.29 -6.39 -0.06 -4.48 16 26 C -0.09 -1.53 9.96 -39.41 -0.39 -1.92 16 27 C -0.18 -3.68 9.98 -39.42 -0.39 -4.08 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.13 2.93 5.63 -52.49 -0.30 2.64 16 30 H 0.13 2.43 6.22 -52.49 -0.33 2.10 16 31 H 0.41 5.13 8.15 -40.82 -0.33 4.79 16 32 H 0.16 1.25 7.64 -52.48 -0.40 0.85 16 33 H 0.16 0.37 8.06 -52.49 -0.42 -0.05 16 34 H 0.16 0.79 7.64 -52.48 -0.40 0.39 16 35 H 0.42 0.92 9.11 45.56 0.42 1.33 16 36 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 339.70 15.07 5.12 5.12 Total: -1.00 -34.99 339.70 -6.22 -41.21 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -2.02 Total: 8.09 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -4.15 Total: -8.22 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.64 Total: -38.24 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.79 Total: -23.49 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.99 -6.22 -41.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.678 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds