Wall clock time and date at job start Tue Mar 31 2020 15:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48506 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47236 * 300.00129 * 3 2 1 6 6 H 1.48498 * 109.47168 * 60.00212 * 3 2 1 7 7 C 1.38641 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99515 * 179.97438 * 7 2 1 9 9 O 1.34812 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.35771 * 116.99811 * 174.96377 * 9 7 2 11 11 C 1.38919 * 119.99772 * 5.34609 * 10 9 7 12 12 C 1.37987 * 120.00604 * 180.02562 * 11 10 9 13 13 C 1.38953 * 119.99436 * 359.97438 * 12 11 10 14 14 N 1.39884 * 120.00335 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00184 * 35.13791 * 14 13 12 16 16 O 1.21531 * 119.99659 * 355.49205 * 15 14 13 17 17 C 1.48182 * 120.00492 * 175.49593 * 15 14 13 18 18 C 1.39671 * 119.65710 * 179.97438 * 17 15 14 19 19 C 1.38525 * 119.25255 * 179.97438 * 18 17 15 20 20 C 1.38593 * 118.55681 * 0.02562 * 19 18 17 21 21 C 1.39621 * 119.24877 * 0.02562 * 20 19 18 22 22 C 1.48125 * 119.65656 * 179.97438 * 21 20 19 23 23 O 1.21424 * 119.99968 * 359.97438 * 22 21 20 24 24 O 1.34673 * 120.00167 * 179.97438 * 22 21 20 25 25 N 1.32344 * 119.65146 * 359.97438 * 17 15 14 26 26 C 1.38952 * 119.99203 * 0.24683 * 13 12 11 27 27 C 1.37994 * 119.99562 * 359.54098 * 26 13 12 28 28 H 0.96994 * 119.99644 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99302 * 0.02562 * 11 10 9 30 30 H 1.07993 * 120.00481 * 179.97438 * 12 11 10 31 31 H 0.96998 * 120.00078 * 215.13503 * 14 13 12 32 32 H 1.08005 * 120.37126 * 359.97438 * 18 17 15 33 33 H 1.08000 * 120.72406 * 179.97438 * 19 18 17 34 34 H 1.08007 * 120.37647 * 180.02562 * 20 19 18 35 35 H 0.96698 * 116.99779 * 179.97438 * 24 22 21 36 36 H 1.08000 * 120.00086 * 179.74726 * 26 13 12 37 37 H 1.07995 * 119.99543 * 180.20861 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0890 -1.2006 -0.0010 9 8 1.3349 -2.3682 -0.0005 10 6 2.0703 -3.5045 -0.1073 11 6 3.4578 -3.4372 -0.0982 12 6 4.2054 -4.5919 -0.2072 13 6 3.5702 -5.8221 -0.3255 14 7 4.3278 -6.9927 -0.4366 15 6 5.4945 -7.1060 0.2287 16 8 5.9286 -6.1620 0.8591 17 6 6.2478 -8.3815 0.1916 18 6 7.4563 -8.4908 0.8833 19 6 8.1533 -9.6873 0.8434 20 6 7.6228 -10.7390 0.1132 21 6 6.4102 -10.5618 -0.5560 22 6 5.8353 -11.6796 -1.3395 23 8 6.4184 -12.7431 -1.3978 24 8 4.6659 -11.5165 -1.9872 25 7 5.7684 -9.4053 -0.4966 26 6 2.1823 -5.8887 -0.3392 27 6 1.4351 -4.7342 -0.2258 28 1 -0.4849 0.8400 0.0004 29 1 3.9514 -2.4810 -0.0058 30 1 5.2840 -4.5395 -0.2006 31 1 4.0136 -7.7229 -0.9924 32 1 7.8429 -7.6519 1.4430 33 1 9.0902 -9.7978 1.3691 34 1 8.1414 -11.6850 0.0623 35 1 4.3307 -12.2743 -2.4857 36 1 1.6885 -6.8444 -0.4353 37 1 0.3564 -4.7863 -0.2330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608188735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:39 Heat of formation + Delta-G solvation = -99.804556 kcal Electronic energy + Delta-G solvation = -25607.420890 eV Core-core repulsion = 21508.166557 eV Total energy + Delta-G solvation = -4099.254332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.20632 -41.40038 -40.65066 -39.95353 -38.16110 -37.21290 -35.56338 -34.23281 -33.81751 -32.96729 -31.87374 -29.66262 -27.37793 -26.60709 -25.92733 -24.02476 -23.43471 -22.61857 -21.55230 -20.09320 -19.53852 -19.39527 -18.82925 -18.27956 -17.93710 -17.12550 -17.00786 -16.66389 -16.50657 -16.26686 -16.00131 -15.68251 -15.48964 -15.25394 -14.73796 -14.62856 -14.61019 -14.34547 -14.12505 -13.57685 -13.31534 -13.24893 -13.22599 -12.73147 -12.63676 -12.45419 -12.24574 -12.10087 -11.54405 -11.38548 -11.19603 -11.06523 -10.81365 -10.59094 -10.51659 -9.85502 -8.64829 -8.46724 -6.13304 -0.80848 -0.35642 0.50838 0.55597 1.14549 1.36258 1.43298 1.54254 1.68236 1.74529 1.91348 2.18470 2.63573 2.77002 2.83160 3.14926 3.50129 3.55827 3.67326 3.82012 3.96322 4.08265 4.11185 4.24157 4.37838 4.47412 4.63245 4.69874 4.87894 4.89752 5.07648 5.11305 5.27001 5.32496 5.38381 5.42682 5.54788 5.68774 6.02161 6.07305 6.18920 6.46788 6.90516 6.97721 7.02242 7.76958 8.76209 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.002233 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.612085 B =12533.701109 C =13404.171559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.099 0.901 9 O -0.226 6.226 10 C 0.110 3.890 11 C -0.227 4.227 12 C -0.071 4.071 13 C 0.054 3.946 14 N -0.631 5.631 15 C 0.564 3.436 16 O -0.547 6.547 17 C 0.064 3.936 18 C -0.078 4.078 19 C -0.065 4.065 20 C -0.074 4.074 21 C 0.068 3.932 22 C 0.551 3.449 23 O -0.525 6.525 24 O -0.493 6.493 25 N -0.422 5.422 26 C -0.075 4.075 27 C -0.179 4.179 28 H 0.273 0.727 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.427 0.573 32 H 0.166 0.834 33 H 0.200 0.800 34 H 0.179 0.821 35 H 0.435 0.565 36 H 0.163 0.837 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.732 -24.433 -1.336 29.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.132 6.132 10 C 0.059 3.941 11 C -0.247 4.247 12 C -0.091 4.091 13 C -0.039 4.039 14 N -0.276 5.276 15 C 0.351 3.649 16 O -0.424 6.424 17 C -0.077 4.077 18 C -0.098 4.098 19 C -0.091 4.091 20 C -0.094 4.094 21 C -0.071 4.071 22 C 0.394 3.606 23 O -0.415 6.415 24 O -0.305 6.305 25 N -0.136 5.136 26 C -0.094 4.094 27 C -0.199 4.199 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.149 0.851 31 H 0.267 0.733 32 H 0.183 0.817 33 H 0.217 0.783 34 H 0.196 0.804 35 H 0.298 0.702 36 H 0.180 0.820 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.115 -23.507 -1.138 28.523 hybrid contribution 0.234 0.149 -0.200 0.342 sum 16.349 -23.358 -1.338 28.543 Atomic orbital electron populations 1.70184 1.07886 1.28751 1.48767 1.26547 0.96867 1.02603 0.95872 0.84549 0.78165 0.74987 0.78638 1.17762 1.19192 1.19273 1.21831 0.92467 0.81490 1.53076 0.88322 1.83940 1.35648 1.12434 1.81186 1.19938 0.91161 0.88313 0.94654 1.21103 0.93201 0.99346 1.11030 1.20936 0.99994 0.90423 0.97769 1.17413 0.90593 0.85605 1.10290 1.42964 1.20652 1.17039 1.46954 1.18255 0.81129 0.86827 0.78720 1.90803 1.68370 1.39441 1.43781 1.20859 0.95561 0.92110 0.99193 1.22691 0.92070 1.00434 0.94635 1.22139 1.01145 0.89764 0.96002 1.22661 0.92792 1.02055 0.91867 1.20188 0.95018 0.90973 1.00918 1.20349 0.78799 0.85394 0.76061 1.90915 1.61671 1.27748 1.61148 1.84639 1.36011 1.48441 1.61440 1.67323 1.32900 0.99094 1.14333 1.20762 0.91062 0.98348 0.99253 1.20299 1.00355 0.89554 1.09651 0.91785 0.86166 0.85110 0.73340 0.81674 0.78321 0.80379 0.70224 0.81998 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.32 13.67 21.61 0.30 -56.03 16 2 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 3 Si 1.02 43.42 29.55 68.60 2.03 45.45 16 4 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.41 -24.29 9.48 67.92 0.64 -23.65 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -13.60 9.75 -22.79 -0.22 -13.82 16 10 C 0.11 5.54 6.65 22.60 0.15 5.69 16 11 C -0.23 -10.51 9.16 22.37 0.20 -10.30 16 12 C -0.07 -2.84 8.69 22.38 0.19 -2.65 16 13 C 0.05 1.87 6.30 38.20 0.24 2.11 16 14 N -0.63 -17.22 5.32 -305.67 -1.63 -18.84 16 15 C 0.56 15.56 7.65 86.89 0.67 16.22 16 16 O -0.55 -18.45 13.75 -3.81 -0.05 -18.50 16 17 C 0.06 1.31 6.75 42.06 0.28 1.59 16 18 C -0.08 -1.09 9.63 22.68 0.22 -0.87 16 19 C -0.07 -0.47 10.16 22.42 0.23 -0.24 16 20 C -0.07 -0.72 9.63 22.69 0.22 -0.50 16 21 C 0.07 1.07 6.75 42.02 0.28 1.36 16 22 C 0.55 8.57 8.32 70.45 0.59 9.16 16 23 O -0.53 -9.73 17.11 20.08 0.34 -9.39 16 24 O -0.49 -5.95 13.24 -55.82 -0.74 -6.68 16 25 N -0.42 -8.11 9.29 -174.14 -1.62 -9.73 16 26 C -0.07 -2.47 9.96 22.38 0.22 -2.25 16 27 C -0.18 -7.44 9.98 22.37 0.22 -7.22 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.12 5.70 5.63 -2.91 -0.02 5.68 16 30 H 0.13 5.07 6.22 -2.91 -0.02 5.05 16 31 H 0.43 9.47 8.15 -92.71 -0.76 8.72 16 32 H 0.17 2.15 7.64 -2.91 -0.02 2.13 16 33 H 0.20 -0.24 8.06 -2.91 -0.02 -0.26 16 34 H 0.18 0.99 7.64 -2.91 -0.02 0.97 16 35 H 0.44 0.96 9.11 -74.06 -0.67 0.28 16 36 H 0.16 3.94 8.06 -2.91 -0.02 3.91 16 37 H 0.13 5.13 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -81.20 339.70 2.99 -78.21 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.24 Total: 21.65 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 4.83 Total: -12.31 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -2.95 Total: -84.60 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -0.67 Total: -48.40 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -81.20 2.99 -78.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.597 kcal (2) G-P(sol) polarization free energy of solvation -81.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds