Wall clock time and date at job start Tue Mar 31 2020 15:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 120.00030 * 2 1 4 4 H 1.48499 * 109.47223 * 270.00347 * 3 2 1 5 5 H 1.48498 * 109.46932 * 30.00404 * 3 2 1 6 6 H 1.48501 * 109.46972 * 150.00178 * 3 2 1 7 7 C 1.40021 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.41332 * 120.00473 * 359.97438 * 7 2 1 10 10 C 1.40606 * 119.78990 * 180.02562 * 9 7 2 11 11 C 1.38316 * 119.13752 * 180.02562 * 10 9 7 12 12 C 1.38676 * 118.67349 * 359.97438 * 11 10 9 13 13 C 1.39675 * 119.49499 * 0.02562 * 12 11 10 14 14 N 1.39121 * 119.58310 * 179.97438 * 13 12 11 15 15 C 1.34769 * 120.00294 * 185.32607 * 14 13 12 16 16 O 1.21775 * 119.99911 * 354.84816 * 15 14 13 17 17 C 1.41545 * 120.00103 * 174.85325 * 15 14 13 18 18 C 1.35579 * 120.00445 * 179.97438 * 17 15 14 19 19 C 1.41726 * 120.00420 * 179.97438 * 18 17 15 20 20 C 1.36468 * 125.67849 * 180.02562 * 19 18 17 21 21 C 1.41732 * 106.59362 * 180.02562 * 20 19 18 22 22 C 1.47352 * 126.76940 * 179.97438 * 21 20 19 23 23 O 1.21525 * 120.00408 * 0.02562 * 22 21 20 24 24 O 1.34752 * 120.00307 * 180.02562 * 22 21 20 25 25 C 1.37932 * 106.46389 * 0.02562 * 21 20 19 26 26 O 1.33586 * 108.38795 * 359.97438 * 25 21 20 27 27 N 1.31963 * 120.84391 * 0.27592 * 13 12 11 28 28 H 0.97000 * 119.99663 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.43132 * 0.04439 * 10 9 7 30 30 H 1.07998 * 120.66704 * 179.97438 * 11 10 9 31 31 H 1.08002 * 120.25629 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99411 * 5.32385 * 14 13 12 33 33 H 1.08002 * 119.99800 * 359.97438 * 17 15 14 34 34 H 1.08002 * 119.99760 * 0.02562 * 18 17 15 35 35 H 1.08003 * 126.69982 * 359.97438 * 20 19 18 36 36 H 0.96698 * 117.00299 * 179.97438 * 24 22 21 37 37 H 1.07997 * 125.80547 * 179.74138 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0084 -3.6517 -0.0005 11 6 1.3032 -4.8416 -0.0011 12 6 -0.0827 -4.7938 -0.0011 13 6 -0.7280 -3.5551 -0.0010 14 7 -2.1183 -3.5049 -0.0016 15 6 -2.7499 -2.3193 -0.1099 16 8 -2.1070 -1.2851 -0.1128 17 6 -4.1604 -2.2762 -0.2201 18 6 -4.7958 -1.0835 -0.3286 19 6 -6.2081 -1.0404 -0.4395 20 6 -6.9633 0.0904 -0.5546 21 6 -8.3139 -0.3314 -0.6368 22 6 -9.5008 0.5314 -0.7709 23 8 -9.3719 1.7387 -0.8220 24 8 -10.7294 -0.0182 -0.8368 25 6 -8.2982 -1.7088 -0.5653 26 8 -7.0295 -2.1103 -0.4480 27 7 -0.0358 -2.4316 -0.0065 28 1 -0.4850 0.8401 0.0004 29 1 3.0885 -3.6559 0.0002 30 1 1.8216 -5.7891 -0.0015 31 1 -0.6587 -5.7074 -0.0011 32 1 -2.6331 -4.3234 0.0760 33 1 -4.7304 -3.1935 -0.2179 34 1 -4.2257 -0.1662 -0.3313 35 1 -6.6023 1.1081 -0.5777 36 1 -11.4775 0.5882 -0.9241 37 1 -9.1646 -2.3529 -0.5950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:53 Heat of formation + Delta-G solvation = -28.243617 kcal Electronic energy + Delta-G solvation = -25748.928603 eV Core-core repulsion = 21652.777385 eV Total energy + Delta-G solvation = -4096.151217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.09620 -40.21319 -39.46052 -37.63840 -36.43246 -34.47603 -33.91066 -33.49681 -33.01216 -30.35063 -29.83407 -28.71220 -25.69121 -25.03522 -24.38748 -21.93443 -21.53603 -21.22354 -20.34955 -19.08552 -18.11570 -17.84374 -17.64436 -16.72763 -16.43195 -16.31425 -15.99633 -15.71854 -14.84457 -14.52531 -14.40585 -14.24733 -13.91048 -13.60684 -13.53827 -13.16677 -12.91439 -12.61873 -12.14731 -12.02947 -12.00083 -11.90525 -11.17798 -11.09999 -10.95124 -10.79543 -10.65190 -10.47493 -10.26684 -9.93879 -9.68823 -9.14025 -9.02306 -8.21382 -7.96675 -7.23582 -6.96544 -6.14417 -4.39997 0.40566 0.90017 2.32005 2.36659 2.69752 2.75484 2.88470 3.14115 3.17999 3.20136 3.27828 3.88661 4.06589 4.15072 4.21634 4.39807 4.76532 4.93579 5.13278 5.17279 5.34598 5.39329 5.70169 5.82386 6.01077 6.03712 6.06233 6.10186 6.28817 6.48673 6.62444 6.69844 6.84425 6.84767 7.23290 7.51636 7.54951 7.61814 7.80978 8.04948 8.19266 8.45258 8.72972 9.04336 9.19843 10.23644 10.47809 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.002648 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.154693 B =10570.672365 C =12378.611384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.656 5.656 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.424 4.424 8 H 0.082 0.918 9 C 0.270 3.730 10 C -0.304 4.304 11 C -0.037 4.037 12 C -0.357 4.357 13 C 0.370 3.630 14 N -0.661 5.661 15 C 0.497 3.503 16 O -0.405 6.405 17 C -0.165 4.165 18 C -0.031 4.031 19 C 0.020 3.980 20 C -0.126 4.126 21 C -0.227 4.227 22 C 0.556 3.444 23 O -0.510 6.510 24 O -0.516 6.516 25 C 0.056 3.944 26 O -0.154 6.154 27 N -0.472 5.472 28 H 0.272 0.728 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.400 0.600 33 H 0.123 0.877 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.417 0.583 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.440 -2.829 -1.001 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.275 5.275 2 C -0.171 4.171 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.328 4.328 11 C -0.061 4.061 12 C -0.383 4.383 13 C 0.131 3.869 14 N -0.308 5.308 15 C 0.282 3.718 16 O -0.272 6.272 17 C -0.186 4.186 18 C -0.050 4.050 19 C -0.029 4.029 20 C -0.145 4.145 21 C -0.230 4.230 22 C 0.400 3.600 23 O -0.399 6.399 24 O -0.328 6.328 25 C -0.017 4.017 26 O -0.047 6.047 27 N -0.191 5.191 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.234 0.766 33 H 0.141 0.859 34 H 0.184 0.816 35 H 0.186 0.814 36 H 0.276 0.724 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -19.125 -1.271 -0.976 19.192 hybrid contribution -0.190 -0.214 -0.050 0.290 sum -19.315 -1.485 -1.025 19.400 Atomic orbital electron populations 1.70327 1.05772 1.27356 1.24029 1.26176 0.95150 1.00598 0.95206 0.86509 0.80549 0.81830 0.79020 1.19661 1.20295 1.18795 1.19579 0.94070 0.89363 1.42455 0.89959 1.18403 0.87205 0.91986 0.87940 1.21629 0.98565 0.93534 1.19036 1.20560 0.93197 0.96532 0.95801 1.20502 0.94824 0.94951 1.27981 1.18603 0.83303 0.90986 0.93965 1.43314 1.05301 1.09179 1.72957 1.17235 0.87608 0.85411 0.81555 1.91302 1.65896 1.30458 1.39542 1.22413 0.95863 0.98507 1.01794 1.20662 0.87057 1.00565 0.96762 1.19577 0.91398 0.83547 1.08327 1.21929 0.90045 1.00099 1.02385 1.19575 0.92486 0.93121 1.17798 1.19736 0.82221 0.85906 0.72101 1.90930 1.86815 1.15696 1.46478 1.84528 1.16951 1.45716 1.85653 1.25167 0.85315 0.94373 0.96796 1.84030 1.16292 1.35664 1.68751 1.68736 1.07005 1.23180 1.20185 0.91637 0.88563 0.88629 0.89082 0.76627 0.85894 0.81628 0.81407 0.72434 0.76005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.91 8.97 55.55 0.50 -17.41 16 2 C 0.06 1.51 5.50 -17.35 -0.10 1.41 16 3 Si 0.90 19.16 29.56 -169.99 -5.02 14.13 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.42 -11.62 9.14 -37.74 -0.34 -11.97 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.27 7.57 6.55 -85.00 -0.56 7.01 16 10 C -0.30 -7.66 9.83 -38.66 -0.38 -8.04 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -7.97 9.95 -38.88 -0.39 -8.36 16 13 C 0.37 8.97 7.42 -155.07 -1.15 7.82 16 14 N -0.66 -12.81 5.37 -14.04 -0.08 -12.89 16 15 C 0.50 9.73 7.51 -15.00 -0.11 9.61 16 16 O -0.41 -9.83 11.85 5.12 0.06 -9.77 16 17 C -0.16 -2.35 9.40 -39.27 -0.37 -2.72 16 18 C -0.03 -0.41 9.37 -39.20 -0.37 -0.78 16 19 C 0.02 0.23 6.77 -38.89 -0.26 -0.04 16 20 C -0.13 -1.40 10.64 -38.89 -0.41 -1.81 16 21 C -0.23 -2.25 6.16 -104.97 -0.65 -2.90 16 22 C 0.56 5.47 8.33 34.44 0.29 5.76 16 23 O -0.51 -6.73 17.72 -19.29 -0.34 -7.08 16 24 O -0.52 -3.12 13.27 -40.63 -0.54 -3.66 16 25 C 0.06 0.43 11.98 30.62 0.37 0.80 16 26 O -0.15 -1.54 10.10 5.95 0.06 -1.48 16 27 N -0.47 -13.17 5.73 -10.28 -0.06 -13.23 16 28 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 29 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 30 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.40 5.90 8.65 -40.82 -0.35 5.54 16 33 H 0.12 1.39 7.70 -52.49 -0.40 0.98 16 34 H 0.17 2.33 7.46 -52.49 -0.39 1.94 16 35 H 0.17 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.42 0.73 9.11 45.56 0.42 1.15 16 37 H 0.22 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -35.98 341.96 -7.50 -43.47 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -2.39 Total: 8.18 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -4.83 Total: -5.43 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.36 Total: -43.53 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.76 Total: -21.98 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.98 -7.50 -43.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.228 kcal (2) G-P(sol) polarization free energy of solvation -35.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds