Wall clock time and date at job start Tue Mar 31 2020 15:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 120.00030 * 2 1 4 4 H 1.48499 * 109.47223 * 270.00347 * 3 2 1 5 5 H 1.48498 * 109.46932 * 30.00404 * 3 2 1 6 6 H 1.48501 * 109.46972 * 150.00178 * 3 2 1 7 7 C 1.40021 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.41332 * 120.00473 * 359.97438 * 7 2 1 10 10 C 1.40606 * 119.78990 * 180.02562 * 9 7 2 11 11 C 1.38316 * 119.13752 * 180.02562 * 10 9 7 12 12 C 1.38676 * 118.67349 * 359.97438 * 11 10 9 13 13 C 1.39675 * 119.49499 * 0.02562 * 12 11 10 14 14 N 1.39121 * 119.58310 * 179.97438 * 13 12 11 15 15 C 1.34769 * 120.00294 * 185.32607 * 14 13 12 16 16 O 1.21775 * 119.99911 * 354.84816 * 15 14 13 17 17 C 1.41545 * 120.00103 * 174.85325 * 15 14 13 18 18 C 1.35579 * 120.00445 * 179.97438 * 17 15 14 19 19 C 1.41726 * 120.00420 * 179.97438 * 18 17 15 20 20 C 1.36468 * 125.67849 * 180.02562 * 19 18 17 21 21 C 1.41732 * 106.59362 * 180.02562 * 20 19 18 22 22 C 1.47352 * 126.76940 * 179.97438 * 21 20 19 23 23 O 1.21525 * 120.00408 * 0.02562 * 22 21 20 24 24 O 1.34752 * 120.00307 * 180.02562 * 22 21 20 25 25 C 1.37932 * 106.46389 * 0.02562 * 21 20 19 26 26 O 1.33586 * 108.38795 * 359.97438 * 25 21 20 27 27 N 1.31963 * 120.84391 * 0.27592 * 13 12 11 28 28 H 0.97000 * 119.99663 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.43132 * 0.04439 * 10 9 7 30 30 H 1.07998 * 120.66704 * 179.97438 * 11 10 9 31 31 H 1.08002 * 120.25629 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99411 * 5.32385 * 14 13 12 33 33 H 1.08002 * 119.99800 * 359.97438 * 17 15 14 34 34 H 1.08002 * 119.99760 * 0.02562 * 18 17 15 35 35 H 1.08003 * 126.69982 * 359.97438 * 20 19 18 36 36 H 0.96698 * 117.00299 * 179.97438 * 24 22 21 37 37 H 1.07997 * 125.80547 * 179.74138 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0084 -3.6517 -0.0005 11 6 1.3032 -4.8416 -0.0011 12 6 -0.0827 -4.7938 -0.0011 13 6 -0.7280 -3.5551 -0.0010 14 7 -2.1183 -3.5049 -0.0016 15 6 -2.7499 -2.3193 -0.1099 16 8 -2.1070 -1.2851 -0.1128 17 6 -4.1604 -2.2762 -0.2201 18 6 -4.7958 -1.0835 -0.3286 19 6 -6.2081 -1.0404 -0.4395 20 6 -6.9633 0.0904 -0.5546 21 6 -8.3139 -0.3314 -0.6368 22 6 -9.5008 0.5314 -0.7709 23 8 -9.3719 1.7387 -0.8220 24 8 -10.7294 -0.0182 -0.8368 25 6 -8.2982 -1.7088 -0.5653 26 8 -7.0295 -2.1103 -0.4480 27 7 -0.0358 -2.4316 -0.0065 28 1 -0.4850 0.8401 0.0004 29 1 3.0885 -3.6559 0.0002 30 1 1.8216 -5.7891 -0.0015 31 1 -0.6587 -5.7074 -0.0011 32 1 -2.6331 -4.3234 0.0760 33 1 -4.7304 -3.1935 -0.2179 34 1 -4.2257 -0.1662 -0.3313 35 1 -6.6023 1.1081 -0.5777 36 1 -11.4775 0.5882 -0.9241 37 1 -9.1646 -2.3529 -0.5950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:52 Heat of formation + Delta-G solvation = -52.930443 kcal Electronic energy + Delta-G solvation = -25749.999104 eV Core-core repulsion = 21652.777385 eV Total energy + Delta-G solvation = -4097.221718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.88770 -41.08380 -40.91168 -39.39565 -37.09138 -36.03997 -35.19824 -34.81243 -34.34162 -32.21763 -31.30456 -30.06544 -27.53158 -25.86887 -25.57033 -23.54875 -22.91877 -22.35361 -21.48017 -20.44182 -19.47093 -18.80751 -18.69393 -17.92525 -17.70884 -17.50276 -16.92002 -16.46837 -16.44775 -16.25101 -15.84350 -15.66607 -15.40602 -15.16417 -14.63640 -14.35983 -13.98952 -13.98332 -13.74642 -13.55236 -13.11720 -12.89198 -12.71638 -12.65289 -12.54674 -12.30478 -11.90320 -11.83558 -11.75861 -11.47551 -11.09355 -10.84650 -10.76086 -9.88124 -9.16811 -9.09315 -8.77049 -8.03455 -6.40181 -0.55972 0.14043 0.94802 1.25163 1.40954 1.45130 1.53324 1.56557 1.63830 2.00196 2.04080 2.27620 2.44885 2.66785 3.05168 3.46334 3.65654 3.89119 4.07628 4.12947 4.21933 4.36940 4.43964 4.66387 4.73936 4.82578 4.88357 4.93849 4.97442 5.08360 5.12334 5.26131 5.31845 5.52923 5.70215 5.79191 5.87765 5.94559 6.17447 6.39014 6.76267 6.86035 6.94205 7.09715 7.67443 8.36324 8.58477 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.002648 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.154693 B =10570.672365 C =12378.611384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.689 5.689 2 C 0.011 3.989 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.085 0.915 9 C 0.235 3.765 10 C -0.330 4.330 11 C -0.035 4.035 12 C -0.346 4.346 13 C 0.347 3.653 14 N -0.650 5.650 15 C 0.493 3.507 16 O -0.463 6.463 17 C -0.182 4.182 18 C -0.005 4.005 19 C -0.004 4.004 20 C -0.122 4.122 21 C -0.259 4.259 22 C 0.565 3.435 23 O -0.555 6.555 24 O -0.499 6.499 25 C 0.104 3.896 26 O -0.154 6.154 27 N -0.507 5.507 28 H 0.271 0.729 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.422 0.578 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.437 0.563 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.008 -4.740 -1.116 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.308 5.308 2 C -0.215 4.215 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.496 4.496 8 H 0.103 0.897 9 C 0.109 3.891 10 C -0.353 4.353 11 C -0.059 4.059 12 C -0.371 4.371 13 C 0.109 3.891 14 N -0.299 5.299 15 C 0.281 3.719 16 O -0.333 6.333 17 C -0.202 4.202 18 C -0.024 4.024 19 C -0.051 4.051 20 C -0.141 4.141 21 C -0.261 4.261 22 C 0.411 3.589 23 O -0.447 6.447 24 O -0.313 6.313 25 C 0.031 3.969 26 O -0.047 6.047 27 N -0.226 5.226 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.260 0.740 33 H 0.177 0.823 34 H 0.165 0.835 35 H 0.181 0.819 36 H 0.299 0.701 37 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -21.749 -3.257 -1.090 22.018 hybrid contribution 0.313 0.219 -0.033 0.383 sum -21.436 -3.038 -1.123 21.679 Atomic orbital electron populations 1.70521 1.07199 1.27984 1.25115 1.27021 0.96061 1.03924 0.94455 0.85329 0.79107 0.76899 0.79080 1.19165 1.19776 1.18078 1.19886 0.94410 0.90477 1.44858 0.89720 1.18902 0.88054 0.93413 0.88707 1.21809 0.99189 0.93879 1.20426 1.21037 0.93620 0.97307 0.93972 1.20994 0.95192 0.95780 1.25131 1.19147 0.85250 0.91125 0.93623 1.43288 1.03727 1.10520 1.72379 1.17991 0.89472 0.84573 0.79838 1.91293 1.67516 1.32161 1.42359 1.22122 0.92821 1.00251 1.05047 1.20566 0.88233 0.99693 0.93946 1.19120 0.90658 0.84188 1.11171 1.22088 0.91240 0.99996 1.00748 1.19693 0.92009 0.94411 1.20028 1.19682 0.83122 0.85133 0.71002 1.90921 1.87524 1.17478 1.48814 1.84469 1.16378 1.45791 1.84705 1.26132 0.85348 0.93990 0.91404 1.84047 1.16989 1.34944 1.68698 1.68705 1.07267 1.25374 1.21274 0.91847 0.87830 0.84547 0.84938 0.73985 0.82334 0.83459 0.81911 0.70073 0.71113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -39.78 8.97 21.84 0.20 -39.58 16 2 C 0.01 0.60 5.50 85.29 0.47 1.07 16 3 Si 0.97 41.11 29.56 68.60 2.03 43.14 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.47 -26.81 9.14 23.46 0.21 -26.59 16 8 H 0.08 4.58 7.85 -2.91 -0.02 4.55 16 9 C 0.23 13.74 6.55 40.20 0.26 14.00 16 10 C -0.33 -16.88 9.83 22.87 0.22 -16.65 16 11 C -0.04 -1.54 10.15 22.39 0.23 -1.32 16 12 C -0.35 -14.80 9.95 22.72 0.23 -14.58 16 13 C 0.35 16.94 7.42 133.28 0.99 17.93 16 14 N -0.65 -25.04 5.37 -316.53 -1.70 -26.73 16 15 C 0.49 19.78 7.51 85.06 0.64 20.42 16 16 O -0.46 -23.75 11.85 -4.59 -0.05 -23.80 16 17 C -0.18 -5.11 9.40 22.47 0.21 -4.90 16 18 C 0.00 -0.12 9.37 22.52 0.21 0.09 16 19 C 0.00 -0.08 6.77 22.72 0.15 0.07 16 20 C -0.12 -2.61 10.64 22.72 0.24 -2.37 16 21 C -0.26 -4.50 6.16 -20.09 -0.12 -4.63 16 22 C 0.56 9.96 8.33 70.22 0.58 10.55 16 23 O -0.55 -14.34 17.72 19.76 0.35 -13.99 16 24 O -0.50 -4.32 13.27 -56.63 -0.75 -5.07 16 25 C 0.10 1.14 11.98 67.75 0.81 1.95 16 26 O -0.15 -2.56 10.10 -1.63 -0.02 -2.57 16 27 N -0.51 -29.37 5.73 -186.43 -1.07 -30.44 16 28 H 0.27 14.65 8.29 -92.71 -0.77 13.88 16 29 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 30 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 31 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 32 H 0.42 11.67 8.65 -92.71 -0.80 10.87 16 33 H 0.16 3.20 7.70 -2.91 -0.02 3.18 16 34 H 0.15 4.48 7.46 -2.91 -0.02 4.46 16 35 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.44 0.16 9.11 -74.06 -0.67 -0.51 16 37 H 0.27 0.07 8.06 -2.91 -0.02 0.05 16 Total: -1.00 -84.22 341.96 4.02 -80.20 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.31 Total: 23.82 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 5.34 Total: -4.97 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -2.57 Total: -96.75 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -0.47 Total: -45.44 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -84.22 4.02 -80.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.270 kcal (2) G-P(sol) polarization free energy of solvation -84.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds