Wall clock time and date at job start Tue Mar 31 2020 14:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99797 * 2 1 4 4 H 1.48507 * 109.47081 * 239.99785 * 3 2 1 5 5 H 1.48497 * 109.47565 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47099 * 120.00314 * 3 2 1 7 7 C 1.38702 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99813 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.35513 * 116.99775 * 174.96026 * 9 7 2 11 11 C 1.38832 * 120.16591 * 5.35916 * 10 9 7 12 12 C 1.38024 * 120.07451 * 180.02562 * 11 10 9 13 13 C 1.38583 * 120.40537 * 359.70135 * 12 11 10 14 14 C 1.37811 * 120.32444 * 0.55649 * 13 12 11 15 15 C 1.39692 * 119.92039 * 359.47061 * 14 13 12 16 16 C 1.47491 * 120.19824 * 180.27561 * 15 14 13 17 17 O 1.21592 * 119.99620 * 180.02562 * 16 15 14 18 18 N 1.34770 * 120.00149 * 359.97438 * 16 15 14 19 19 C 1.39336 * 119.99928 * 175.45441 * 18 16 15 20 20 C 1.39400 * 120.39685 * 35.00763 * 19 18 16 21 21 C 1.38263 * 118.43440 * 179.97438 * 20 19 18 22 22 C 1.39538 * 119.14624 * 0.02562 * 21 20 19 23 23 C 1.47787 * 119.64342 * 179.97438 * 22 21 20 24 24 O 1.21467 * 119.99994 * 359.97438 * 23 22 21 25 25 O 1.34719 * 120.00312 * 179.97438 * 23 22 21 26 26 N 1.32863 * 120.71654 * 359.97438 * 22 21 20 27 27 C 1.31327 * 121.70373 * 359.72586 * 26 22 21 28 28 H 0.97003 * 119.99866 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.96235 * 0.02562 * 11 10 9 30 30 H 1.07998 * 119.79694 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.83170 * 180.27977 * 13 12 11 32 32 H 1.08001 * 120.03922 * 179.74662 * 14 13 12 33 33 H 0.97000 * 120.00636 * 355.45153 * 18 16 15 34 34 H 1.08004 * 120.78027 * 0.02562 * 20 19 18 35 35 H 1.07997 * 120.42338 * 179.97438 * 21 20 19 36 36 H 0.96693 * 117.00702 * 179.97438 * 25 23 22 37 37 H 1.07997 * 119.60205 * 180.29342 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3346 -2.3687 0.0005 10 6 2.0687 -3.5029 -0.1050 11 6 3.4555 -3.4397 -0.0951 12 6 4.2014 -4.5960 -0.2032 13 6 3.5747 -5.8269 -0.3161 14 6 2.1991 -5.9084 -0.3330 15 6 1.4309 -4.7467 -0.2249 16 6 -0.0417 -4.8273 -0.2363 17 8 -0.7068 -3.8138 -0.1425 18 7 -0.6502 -6.0243 -0.3517 19 6 -2.0383 -6.1112 -0.2674 20 6 -2.8410 -5.0910 -0.7752 21 6 -4.2137 -5.2194 -0.6704 22 6 -4.7454 -6.3578 -0.0635 23 6 -6.2111 -6.5060 0.0549 24 8 -6.9458 -5.6393 -0.3745 25 8 -6.7323 -7.6024 0.6391 26 7 -3.9484 -7.3099 0.4091 27 6 -2.6410 -7.2225 0.3208 28 1 -0.4850 0.8401 0.0004 29 1 3.9514 -2.4847 -0.0026 30 1 5.2800 -4.5416 -0.1954 31 1 4.1674 -6.7262 -0.3956 32 1 1.7156 -6.8697 -0.4253 33 1 -0.1219 -6.8254 -0.4935 34 1 -2.4011 -4.2212 -1.2403 35 1 -4.8659 -4.4480 -1.0526 36 1 -7.6962 -7.6545 0.6938 37 1 -2.0254 -8.0187 0.7122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610623177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:48 Heat of formation + Delta-G solvation = -73.153410 kcal Electronic energy + Delta-G solvation = -26318.609043 eV Core-core repulsion = 22220.510391 eV Total energy + Delta-G solvation = -4098.098652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.00488 -40.11388 -39.32127 -38.20826 -36.54238 -36.19838 -34.84140 -32.49755 -32.32761 -31.29931 -29.79225 -29.09285 -25.71708 -25.24996 -23.79186 -23.25176 -21.96187 -21.35207 -20.23455 -18.70365 -18.26093 -17.93429 -17.60139 -17.01500 -16.49617 -16.05610 -15.81025 -14.94518 -14.86349 -14.61664 -14.58114 -14.32147 -13.97485 -13.79400 -13.69416 -13.39628 -13.08428 -13.06271 -12.70151 -12.49525 -11.84268 -11.67038 -11.50429 -11.30238 -11.01688 -10.97786 -10.97148 -10.75715 -10.57810 -9.96789 -9.82460 -9.64930 -9.07410 -9.00961 -8.51188 -8.30205 -7.48910 -6.59268 -4.18964 0.42832 1.21410 1.48582 2.15906 2.34146 2.79461 3.03928 3.05661 3.08879 3.14766 3.37314 3.78924 3.82117 4.21748 4.42768 4.71954 4.82315 4.89394 4.98837 5.00570 5.16866 5.30154 5.34207 5.54957 5.57034 5.85860 5.88370 5.94567 6.14901 6.24166 6.29893 6.38755 6.49126 6.72186 6.75592 6.89214 7.05900 7.13768 7.51115 7.51730 7.56164 7.79515 7.88577 8.59313 8.80654 9.48485 10.53881 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.003301 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.970997 B = 8480.967616 C =10575.830915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.046 3.954 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.404 4.404 8 H 0.096 0.904 9 O -0.121 6.121 10 C 0.190 3.810 11 C -0.234 4.234 12 C -0.046 4.046 13 C -0.229 4.229 14 C -0.035 4.035 15 C -0.235 4.235 16 C 0.553 3.447 17 O -0.476 6.476 18 N -0.677 5.677 19 C 0.156 3.844 20 C -0.095 4.095 21 C -0.074 4.074 22 C 0.044 3.956 23 C 0.548 3.452 24 O -0.512 6.512 25 O -0.496 6.496 26 N -0.414 5.414 27 C 0.062 3.938 28 H 0.274 0.726 29 H 0.134 0.866 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.410 0.590 34 H 0.166 0.834 35 H 0.152 0.848 36 H 0.409 0.591 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 -13.636 -1.093 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.480 4.480 8 H 0.113 0.887 9 O -0.018 6.018 10 C 0.129 3.871 11 C -0.253 4.253 12 C -0.065 4.065 13 C -0.248 4.248 14 C -0.054 4.054 15 C -0.240 4.240 16 C 0.346 3.654 17 O -0.348 6.348 18 N -0.324 5.324 19 C 0.056 3.944 20 C -0.123 4.123 21 C -0.095 4.095 22 C -0.093 4.093 23 C 0.391 3.609 24 O -0.400 6.400 25 O -0.305 6.305 26 N -0.124 5.124 27 C -0.103 4.103 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.248 0.752 34 H 0.184 0.816 35 H 0.170 0.830 36 H 0.267 0.733 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.630 -13.016 -0.735 13.300 hybrid contribution 0.686 1.028 -0.331 1.280 sum -1.944 -11.988 -1.066 12.191 Atomic orbital electron populations 1.70092 1.06033 1.28209 1.41592 1.25411 0.95846 0.99071 0.95909 0.85769 0.78839 0.79429 0.79369 1.19255 1.20031 1.19258 1.21488 0.91982 0.80922 1.53572 0.88707 1.84135 1.33795 1.11134 1.72753 1.19214 0.89930 0.87181 0.90734 1.21177 0.93265 0.99492 1.11387 1.20949 0.98839 0.92257 0.94467 1.20477 0.93981 0.97244 1.13075 1.20749 0.94019 0.95305 0.95334 1.18544 0.90539 0.92499 1.22391 1.18500 0.88461 0.82071 0.76405 1.90958 1.65355 1.33366 1.45161 1.43561 1.03812 1.11799 1.73194 1.19164 0.84877 0.96203 0.94131 1.21931 0.92138 1.00331 0.97898 1.22017 0.95615 0.96425 0.95405 1.19745 0.90414 0.94048 1.05048 1.20416 0.88169 0.78678 0.73592 1.90912 1.60930 1.41852 1.46343 1.84697 1.29740 1.42770 1.73340 1.67514 1.04688 1.26964 1.13270 1.22642 0.90445 0.98208 0.98983 0.91554 0.84883 0.86954 0.87006 0.86935 0.75232 0.81645 0.83039 0.73280 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.80 13.67 55.48 0.76 -23.04 16 2 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 19.59 29.55 -169.99 -5.02 14.56 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.40 -10.79 9.49 30.90 0.29 -10.50 16 8 H 0.10 2.28 5.20 -52.49 -0.27 2.01 16 9 O -0.12 -3.32 7.84 -21.03 -0.16 -3.49 16 10 C 0.19 4.34 6.66 -38.59 -0.26 4.08 16 11 C -0.23 -4.62 9.16 -39.44 -0.36 -4.98 16 12 C -0.05 -0.74 10.03 -39.53 -0.40 -1.14 16 13 C -0.23 -3.32 10.02 -39.61 -0.40 -3.72 16 14 C -0.04 -0.53 9.53 -39.20 -0.37 -0.90 16 15 C -0.23 -4.56 5.89 -104.81 -0.62 -5.18 16 16 C 0.55 10.79 7.61 -12.49 -0.10 10.69 16 17 O -0.48 -11.61 12.62 -16.57 -0.21 -11.82 16 18 N -0.68 -9.57 5.27 -10.69 -0.06 -9.62 16 19 C 0.16 2.25 6.32 -83.57 -0.53 1.72 16 20 C -0.10 -1.52 8.78 -39.14 -0.34 -1.86 16 21 C -0.07 -1.08 9.62 -39.09 -0.38 -1.46 16 22 C 0.04 0.63 6.74 -83.03 -0.56 0.07 16 23 C 0.55 7.43 8.31 34.64 0.29 7.72 16 24 O -0.51 -7.87 17.10 -19.24 -0.33 -8.20 16 25 O -0.50 -5.26 13.24 -40.54 -0.54 -5.80 16 26 N -0.41 -5.83 10.10 -9.65 -0.10 -5.92 16 27 C 0.06 0.78 11.12 -17.32 -0.19 0.58 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.13 2.60 5.64 -52.48 -0.30 2.30 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.11 1.18 6.41 -52.49 -0.34 0.85 16 33 H 0.41 4.14 6.86 -40.82 -0.28 3.86 16 34 H 0.17 3.01 6.30 -52.48 -0.33 2.67 16 35 H 0.15 2.07 7.63 -52.49 -0.40 1.67 16 36 H 0.41 2.16 9.11 45.56 0.42 2.58 16 37 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -34.86 335.15 -6.53 -41.39 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -1.91 Total: 10.61 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -4.01 Total: -3.73 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.60 Total: -38.59 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.24 Total: -29.30 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.86 -6.53 -41.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.765 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds