Wall clock time and date at job start Tue Mar 31 2020 14:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99797 * 2 1 4 4 H 1.48507 * 109.47081 * 239.99785 * 3 2 1 5 5 H 1.48497 * 109.47565 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47099 * 120.00314 * 3 2 1 7 7 C 1.38702 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99813 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.35513 * 116.99775 * 174.96026 * 9 7 2 11 11 C 1.38832 * 120.16591 * 5.35916 * 10 9 7 12 12 C 1.38024 * 120.07451 * 180.02562 * 11 10 9 13 13 C 1.38583 * 120.40537 * 359.70135 * 12 11 10 14 14 C 1.37811 * 120.32444 * 0.55649 * 13 12 11 15 15 C 1.39692 * 119.92039 * 359.47061 * 14 13 12 16 16 C 1.47491 * 120.19824 * 180.27561 * 15 14 13 17 17 O 1.21592 * 119.99620 * 180.02562 * 16 15 14 18 18 N 1.34770 * 120.00149 * 359.97438 * 16 15 14 19 19 C 1.39336 * 119.99928 * 175.45441 * 18 16 15 20 20 C 1.39400 * 120.39685 * 35.00763 * 19 18 16 21 21 C 1.38263 * 118.43440 * 179.97438 * 20 19 18 22 22 C 1.39538 * 119.14624 * 0.02562 * 21 20 19 23 23 C 1.47787 * 119.64342 * 179.97438 * 22 21 20 24 24 O 1.21467 * 119.99994 * 359.97438 * 23 22 21 25 25 O 1.34719 * 120.00312 * 179.97438 * 23 22 21 26 26 N 1.32863 * 120.71654 * 359.97438 * 22 21 20 27 27 C 1.31327 * 121.70373 * 359.72586 * 26 22 21 28 28 H 0.97003 * 119.99866 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.96235 * 0.02562 * 11 10 9 30 30 H 1.07998 * 119.79694 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.83170 * 180.27977 * 13 12 11 32 32 H 1.08001 * 120.03922 * 179.74662 * 14 13 12 33 33 H 0.97000 * 120.00636 * 355.45153 * 18 16 15 34 34 H 1.08004 * 120.78027 * 0.02562 * 20 19 18 35 35 H 1.07997 * 120.42338 * 179.97438 * 21 20 19 36 36 H 0.96693 * 117.00702 * 179.97438 * 25 23 22 37 37 H 1.07997 * 119.60205 * 180.29342 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3346 -2.3687 0.0005 10 6 2.0687 -3.5029 -0.1050 11 6 3.4555 -3.4397 -0.0951 12 6 4.2014 -4.5960 -0.2032 13 6 3.5747 -5.8269 -0.3161 14 6 2.1991 -5.9084 -0.3330 15 6 1.4309 -4.7467 -0.2249 16 6 -0.0417 -4.8273 -0.2363 17 8 -0.7068 -3.8138 -0.1425 18 7 -0.6502 -6.0243 -0.3517 19 6 -2.0383 -6.1112 -0.2674 20 6 -2.8410 -5.0910 -0.7752 21 6 -4.2137 -5.2194 -0.6704 22 6 -4.7454 -6.3578 -0.0635 23 6 -6.2111 -6.5060 0.0549 24 8 -6.9458 -5.6393 -0.3745 25 8 -6.7323 -7.6024 0.6391 26 7 -3.9484 -7.3099 0.4091 27 6 -2.6410 -7.2225 0.3208 28 1 -0.4850 0.8401 0.0004 29 1 3.9514 -2.4847 -0.0026 30 1 5.2800 -4.5416 -0.1954 31 1 4.1674 -6.7262 -0.3956 32 1 1.7156 -6.8697 -0.4253 33 1 -0.1219 -6.8254 -0.4935 34 1 -2.4011 -4.2212 -1.2403 35 1 -4.8659 -4.4480 -1.0526 36 1 -7.6962 -7.6545 0.6938 37 1 -2.0254 -8.0187 0.7122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610623177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:47 Heat of formation + Delta-G solvation = -99.323814 kcal Electronic energy + Delta-G solvation = -26319.743877 eV Core-core repulsion = 22220.510391 eV Total energy + Delta-G solvation = -4099.233486 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22085 -41.39486 -40.63990 -39.65867 -38.07322 -37.18851 -36.24913 -34.34469 -33.52186 -32.63527 -31.05142 -30.58093 -27.46222 -26.57449 -24.94592 -24.59046 -23.31518 -22.64656 -21.62291 -20.00801 -19.81466 -19.21410 -18.70662 -18.37998 -17.98340 -17.24582 -16.87782 -16.45572 -16.29156 -16.16467 -15.96120 -15.69710 -15.41564 -15.23277 -14.84231 -14.75080 -14.47810 -14.31962 -14.27290 -13.65006 -13.56074 -13.02340 -12.70756 -12.65465 -12.52597 -12.38802 -12.17480 -12.13897 -12.01304 -11.51285 -11.13328 -10.97606 -10.83499 -10.50860 -9.91617 -9.52380 -9.05366 -8.46877 -6.17162 -0.74725 0.05189 0.08526 0.72531 1.23134 1.32516 1.44381 1.49475 1.74887 1.90657 1.98223 2.14368 2.64246 2.85772 3.18643 3.19442 3.42023 3.56832 3.67800 3.79686 4.00916 4.06592 4.13305 4.28631 4.48470 4.52062 4.62832 4.74831 4.93221 4.96207 5.04055 5.06461 5.12035 5.40860 5.45455 5.52421 5.59094 5.70271 5.92827 6.15162 6.36860 6.48766 6.93075 6.94525 7.18272 7.75698 8.72563 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.003301 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.970997 B = 8480.967616 C =10575.830915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.018 4.018 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.427 4.427 8 H 0.107 0.893 9 O -0.186 6.186 10 C 0.153 3.847 11 C -0.259 4.259 12 C -0.036 4.036 13 C -0.200 4.200 14 C -0.025 4.025 15 C -0.246 4.246 16 C 0.551 3.449 17 O -0.536 6.536 18 N -0.649 5.649 19 C 0.146 3.854 20 C -0.113 4.113 21 C -0.080 4.080 22 C 0.040 3.960 23 C 0.555 3.445 24 O -0.536 6.536 25 O -0.487 6.487 26 N -0.418 5.418 27 C 0.087 3.913 28 H 0.271 0.729 29 H 0.123 0.877 30 H 0.153 0.847 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.433 0.567 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.433 0.567 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 -18.394 -0.791 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.218 4.218 3 Si 0.836 3.164 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.502 4.502 8 H 0.125 0.875 9 O -0.088 6.088 10 C 0.097 3.903 11 C -0.278 4.278 12 C -0.054 4.054 13 C -0.218 4.218 14 C -0.043 4.043 15 C -0.250 4.250 16 C 0.344 3.656 17 O -0.412 6.412 18 N -0.298 5.298 19 C 0.046 3.954 20 C -0.141 4.141 21 C -0.101 4.101 22 C -0.096 4.096 23 C 0.399 3.601 24 O -0.427 6.427 25 O -0.300 6.300 26 N -0.129 5.129 27 C -0.078 4.078 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.170 0.830 31 H 0.183 0.817 32 H 0.186 0.814 33 H 0.276 0.724 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.295 0.705 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.099 -17.913 -0.436 17.919 hybrid contribution 0.034 1.915 -0.445 1.967 sum -0.065 -15.998 -0.881 16.022 Atomic orbital electron populations 1.70283 1.08238 1.28670 1.46515 1.26676 0.96686 1.02964 0.95495 0.84673 0.77412 0.74143 0.80125 1.17842 1.20009 1.17861 1.21965 0.92696 0.81696 1.53868 0.87530 1.84146 1.35196 1.12186 1.77295 1.20060 0.91663 0.87478 0.91088 1.21307 0.92354 1.01031 1.13096 1.21478 1.00788 0.91375 0.91794 1.21205 0.94091 0.98375 1.08125 1.21373 0.94439 0.95665 0.92837 1.19020 0.91055 0.93066 1.21897 1.18721 0.88738 0.82662 0.75509 1.90968 1.66500 1.35942 1.47765 1.43105 1.03885 1.10951 1.71872 1.19283 0.84650 0.96628 0.94842 1.21752 0.93119 1.00224 0.99012 1.21987 0.95109 0.97047 0.95907 1.19914 0.91356 0.93785 1.04520 1.20207 0.87673 0.78933 0.73330 1.90909 1.61359 1.42877 1.47509 1.84631 1.32100 1.41026 1.72227 1.67639 1.05231 1.26595 1.13424 1.23282 0.90168 0.97803 0.96595 0.92036 0.85971 0.82978 0.81650 0.81370 0.72449 0.84944 0.83105 0.70452 0.76937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.03 13.67 21.62 0.30 -56.73 16 2 C -0.02 -1.05 5.49 84.85 0.47 -0.58 16 3 Si 1.02 42.84 29.55 68.60 2.03 44.87 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.43 -24.65 9.49 67.93 0.64 -24.01 16 8 H 0.11 5.50 5.20 -2.91 -0.02 5.49 16 9 O -0.19 -11.14 7.84 0.95 0.01 -11.13 16 10 C 0.15 7.24 6.66 22.91 0.15 7.39 16 11 C -0.26 -10.17 9.16 22.36 0.20 -9.97 16 12 C -0.04 -1.00 10.03 22.30 0.22 -0.78 16 13 C -0.20 -4.47 10.02 22.25 0.22 -4.24 16 14 C -0.02 -0.62 9.53 22.52 0.21 -0.40 16 15 C -0.25 -9.37 5.89 -19.99 -0.12 -9.49 16 16 C 0.55 21.91 7.61 86.68 0.66 22.57 16 17 O -0.54 -28.29 12.62 16.89 0.21 -28.08 16 18 N -0.65 -17.15 5.27 -306.01 -1.61 -18.76 16 19 C 0.15 4.05 6.32 38.52 0.24 4.29 16 20 C -0.11 -3.82 8.78 22.56 0.20 -3.62 16 21 C -0.08 -2.45 9.62 22.59 0.22 -2.23 16 22 C 0.04 1.12 6.74 41.83 0.28 1.41 16 23 C 0.55 14.54 8.31 70.35 0.58 15.13 16 24 O -0.54 -16.45 17.10 19.94 0.34 -16.11 16 25 O -0.49 -9.28 13.24 -56.28 -0.75 -10.02 16 26 N -0.42 -10.77 10.10 -184.44 -1.86 -12.64 16 27 C 0.09 1.88 11.12 85.05 0.95 2.83 16 28 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 29 H 0.12 4.94 5.64 -2.91 -0.02 4.93 16 30 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.17 2.24 6.41 -2.91 -0.02 2.22 16 33 H 0.43 6.76 6.86 -92.71 -0.64 6.12 16 34 H 0.13 5.42 6.30 -2.91 -0.02 5.40 16 35 H 0.15 4.51 7.63 -2.91 -0.02 4.49 16 36 H 0.43 3.53 9.11 -74.06 -0.67 2.85 16 37 H 0.21 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -88.87 335.15 3.68 -85.18 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.12 Total: 25.13 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 5.14 Total: -1.70 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -3.18 Total: -88.13 kcal Atomic # 8 Polarization: -65.16 SS G_CDS: -0.18 Total: -65.35 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -88.87 3.68 -85.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.143 kcal (2) G-P(sol) polarization free energy of solvation -88.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds