Wall clock time and date at job start Tue Mar 31 2020 14:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86794 * 120.00172 * 2 1 4 4 H 1.48497 * 109.47472 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47229 * 300.00081 * 3 2 1 6 6 H 1.48499 * 109.47156 * 59.99803 * 3 2 1 7 7 C 1.38654 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00163 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00222 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00247 * 185.02121 * 9 7 2 11 11 C 1.38955 * 120.02982 * 354.34475 * 10 9 7 12 12 C 1.38128 * 120.06861 * 179.78354 * 11 10 9 13 13 C 1.38187 * 120.14557 * 0.46847 * 12 11 10 14 14 C 1.38941 * 120.06652 * 359.78365 * 13 12 11 15 15 N 1.39844 * 120.04190 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00229 * 215.11727 * 15 14 13 17 17 O 1.21559 * 119.99818 * 355.47997 * 16 15 14 18 18 C 1.47821 * 120.00279 * 175.49059 * 16 15 14 19 19 C 1.39692 * 120.48677 * 359.71525 * 18 16 15 20 20 N 1.31743 * 120.88795 * 179.72377 * 19 18 16 21 21 C 1.31751 * 122.04912 * 0.54856 * 20 19 18 22 22 C 1.39686 * 120.87545 * 359.74607 * 21 20 19 23 23 C 1.47733 * 120.49528 * 179.97438 * 22 21 20 24 24 O 1.21470 * 120.00473 * 180.02562 * 23 22 21 25 25 O 1.34711 * 119.99879 * 0.02562 * 23 22 21 26 26 C 1.39730 * 120.49273 * 179.97438 * 18 16 15 27 27 C 1.38731 * 120.03036 * 174.61331 * 10 9 7 28 28 H 0.97003 * 120.00073 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.96450 * 359.97438 * 11 10 9 30 30 H 1.08006 * 119.92484 * 180.20776 * 12 11 10 31 31 H 1.08002 * 119.97364 * 179.76276 * 13 12 11 32 32 H 0.96996 * 120.00044 * 35.11591 * 15 14 13 33 33 H 1.07991 * 119.55803 * 359.97438 * 19 18 16 34 34 H 1.07996 * 119.56481 * 179.71706 * 21 20 19 35 35 H 0.96701 * 116.99872 * 179.97438 * 25 23 22 36 36 H 1.08001 * 120.92228 * 359.97438 * 26 18 16 37 37 H 1.07989 * 120.07367 * 359.96162 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5047 0.1048 11 6 3.4578 -3.4389 0.0880 12 6 4.2069 -4.5941 0.1996 13 6 3.5792 -5.8194 0.3185 14 6 2.1917 -5.8925 0.3307 15 7 1.5570 -7.1327 0.4517 16 6 0.3979 -7.3626 -0.1965 17 8 -0.1382 -6.4669 -0.8193 18 6 -0.2216 -8.7040 -0.1498 19 6 0.3886 -9.7422 0.5582 20 7 -0.1593 -10.9392 0.6095 21 6 -1.2909 -11.2170 -0.0054 22 6 -1.9657 -10.2400 -0.7411 23 6 -3.2337 -10.5609 -1.4278 24 8 -3.8128 -9.7045 -2.0655 25 8 -3.7478 -11.8034 -1.3467 26 6 -1.4234 -8.9535 -0.8175 27 6 1.4364 -4.7332 0.2237 28 1 -0.4850 0.8401 -0.0004 29 1 3.9514 -2.4833 -0.0094 30 1 5.2855 -4.5399 0.1896 31 1 4.1675 -6.7212 0.4018 32 1 1.9510 -7.8275 1.0020 33 1 1.3199 -9.5601 1.0736 34 1 -1.7020 -12.2136 0.0598 35 1 -4.5797 -11.9656 -1.8124 36 1 -1.9195 -8.1744 -1.3771 37 1 0.3579 -4.7872 0.2333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610623485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:04 Heat of formation + Delta-G solvation = -75.304955 kcal Electronic energy + Delta-G solvation = -25688.263872 eV Core-core repulsion = 21590.071922 eV Total energy + Delta-G solvation = -4098.191950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.40423 -40.40018 -39.56699 -38.55042 -36.62846 -36.55551 -34.38325 -33.15715 -32.40769 -32.22923 -29.53293 -28.52568 -25.85271 -25.45855 -24.90457 -22.68579 -22.21362 -21.48313 -20.50531 -18.94842 -18.41850 -18.19562 -17.35282 -17.13304 -17.06139 -16.18692 -16.12861 -15.49042 -15.30504 -15.10332 -14.61186 -14.33668 -14.14034 -13.92588 -13.71783 -13.62409 -13.55811 -13.16220 -12.82588 -12.56858 -12.07145 -11.77549 -11.59316 -11.40036 -11.26302 -11.04889 -10.86188 -10.52977 -10.45519 -10.37691 -9.90235 -9.85282 -9.81036 -9.24176 -8.84112 -7.78840 -7.23332 -6.43674 -4.02899 -0.17854 0.36220 1.86887 2.05340 2.29998 2.36423 2.74287 2.96224 3.13581 3.14556 3.20368 3.39016 3.67372 3.96600 4.10038 4.19522 4.28841 4.52002 4.54820 4.67514 4.91666 5.10635 5.28439 5.46269 5.47439 5.57695 5.76717 5.81591 5.96204 6.02829 6.13953 6.33076 6.58472 6.77631 6.97848 7.03668 7.14232 7.31531 7.38054 7.42827 7.52493 7.71731 8.00744 8.11365 9.01120 9.71689 10.74114 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002462 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.881379 B =11371.086440 C =12725.259651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.166 3.834 11 C -0.242 4.242 12 C -0.058 4.058 13 C -0.233 4.233 14 C 0.171 3.829 15 N -0.660 5.660 16 C 0.555 3.445 17 O -0.494 6.494 18 C -0.187 4.187 19 C 0.168 3.832 20 N -0.490 5.490 21 C 0.180 3.820 22 C -0.187 4.187 23 C 0.534 3.466 24 O -0.500 6.500 25 O -0.511 6.511 26 C 0.048 3.952 27 C -0.185 4.185 28 H 0.270 0.730 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.405 0.595 33 H 0.169 0.831 34 H 0.178 0.822 35 H 0.420 0.580 36 H 0.166 0.834 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 -23.559 1.395 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.111 3.889 11 C -0.262 4.262 12 C -0.077 4.077 13 C -0.254 4.254 14 C 0.078 3.922 15 N -0.305 5.305 16 C 0.341 3.659 17 O -0.368 6.368 18 C -0.193 4.193 19 C 0.011 3.989 20 N -0.198 5.198 21 C 0.022 3.978 22 C -0.191 4.191 23 C 0.376 3.624 24 O -0.388 6.388 25 O -0.324 6.324 26 C 0.022 3.978 27 C -0.206 4.206 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.241 0.759 33 H 0.186 0.814 34 H 0.195 0.805 35 H 0.279 0.721 36 H 0.184 0.816 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.357 -23.052 1.407 23.098 hybrid contribution -0.246 0.982 -0.524 1.140 sum -0.603 -22.070 0.883 22.096 Atomic orbital electron populations 1.70064 1.05984 1.27606 1.45695 1.25320 0.95848 0.98886 0.96535 0.85631 0.79108 0.80321 0.78249 1.19066 1.20141 1.20142 1.21402 0.91861 0.80736 1.52817 0.88878 1.83995 1.34286 1.11374 1.77844 1.19132 0.90020 0.87838 0.91904 1.21208 0.93738 0.99190 1.12069 1.20506 0.98465 0.91667 0.97074 1.20260 0.91689 0.97826 1.15645 1.17121 0.90921 0.83040 1.01108 1.43160 1.23496 1.15099 1.48750 1.17923 0.81124 0.87031 0.79839 1.90918 1.60874 1.44143 1.40856 1.20970 0.98174 0.96071 1.04063 1.23363 0.97620 0.87120 0.90829 1.67848 1.11040 1.20981 1.19912 1.23459 0.88459 0.99141 0.86711 1.20019 0.96613 0.96289 1.06151 1.20429 0.84280 0.79892 0.77779 1.90970 1.60332 1.48284 1.39191 1.84500 1.43879 1.32137 1.71842 1.21931 0.90916 0.95228 0.89714 1.20174 1.00625 0.88800 1.11036 0.92018 0.85368 0.86919 0.87236 0.75907 0.81374 0.80477 0.72080 0.81629 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.64 13.67 55.48 0.76 -24.88 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 8 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 9 O -0.17 -5.05 9.75 0.05 0.00 -5.04 16 10 C 0.17 4.11 6.64 -39.13 -0.26 3.85 16 11 C -0.24 -5.22 9.17 -39.36 -0.36 -5.58 16 12 C -0.06 -1.02 10.03 -39.64 -0.40 -1.42 16 13 C -0.23 -3.78 9.96 -39.34 -0.39 -4.17 16 14 C 0.17 3.04 6.29 -83.74 -0.53 2.52 16 15 N -0.66 -8.84 5.28 -10.74 -0.06 -8.89 16 16 C 0.56 8.17 7.62 -12.34 -0.09 8.08 16 17 O -0.49 -9.72 13.85 5.31 0.07 -9.65 16 18 C -0.19 -2.06 5.88 -104.88 -0.62 -2.68 16 19 C 0.17 1.40 10.71 -17.05 -0.18 1.21 16 20 N -0.49 -4.19 10.33 -12.56 -0.13 -4.32 16 21 C 0.18 1.37 10.78 -17.05 -0.18 1.18 16 22 C -0.19 -1.72 5.88 -104.89 -0.62 -2.34 16 23 C 0.53 4.85 8.28 34.61 0.29 5.14 16 24 O -0.50 -6.36 17.20 -19.24 -0.33 -6.69 16 25 O -0.51 -2.70 12.70 -40.52 -0.51 -3.21 16 26 C 0.05 0.54 9.25 -38.43 -0.36 0.19 16 27 C -0.19 -4.16 8.64 -39.20 -0.34 -4.50 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 29 H 0.13 2.75 5.63 -52.49 -0.30 2.45 16 30 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.40 3.53 6.89 -40.82 -0.28 3.25 16 33 H 0.17 0.86 6.42 -52.49 -0.34 0.52 16 34 H 0.18 0.86 7.61 -52.49 -0.40 0.46 16 35 H 0.42 0.47 9.11 45.56 0.42 0.89 16 36 H 0.17 2.11 7.40 -52.49 -0.39 1.72 16 37 H 0.13 3.23 6.23 -52.49 -0.33 2.90 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -37.16 336.69 -5.86 -43.02 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -1.87 Total: 7.29 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -3.84 Total: -8.31 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.57 Total: -38.10 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.77 Total: -24.60 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.16 -5.86 -43.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.288 kcal (2) G-P(sol) polarization free energy of solvation -37.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds