Wall clock time and date at job start Tue Mar 31 2020 14:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86794 * 120.00172 * 2 1 4 4 H 1.48497 * 109.47472 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47229 * 300.00081 * 3 2 1 6 6 H 1.48499 * 109.47156 * 59.99803 * 3 2 1 7 7 C 1.38654 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00163 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00222 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00247 * 185.02121 * 9 7 2 11 11 C 1.38955 * 120.02982 * 354.34475 * 10 9 7 12 12 C 1.38128 * 120.06861 * 179.78354 * 11 10 9 13 13 C 1.38187 * 120.14557 * 0.46847 * 12 11 10 14 14 C 1.38941 * 120.06652 * 359.78365 * 13 12 11 15 15 N 1.39844 * 120.04190 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00229 * 215.11727 * 15 14 13 17 17 O 1.21559 * 119.99818 * 355.47997 * 16 15 14 18 18 C 1.47821 * 120.00279 * 175.49059 * 16 15 14 19 19 C 1.39692 * 120.48677 * 359.71525 * 18 16 15 20 20 N 1.31743 * 120.88795 * 179.72377 * 19 18 16 21 21 C 1.31751 * 122.04912 * 0.54856 * 20 19 18 22 22 C 1.39686 * 120.87545 * 359.74607 * 21 20 19 23 23 C 1.47733 * 120.49528 * 179.97438 * 22 21 20 24 24 O 1.21470 * 120.00473 * 180.02562 * 23 22 21 25 25 O 1.34711 * 119.99879 * 0.02562 * 23 22 21 26 26 C 1.39730 * 120.49273 * 179.97438 * 18 16 15 27 27 C 1.38731 * 120.03036 * 174.61331 * 10 9 7 28 28 H 0.97003 * 120.00073 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.96450 * 359.97438 * 11 10 9 30 30 H 1.08006 * 119.92484 * 180.20776 * 12 11 10 31 31 H 1.08002 * 119.97364 * 179.76276 * 13 12 11 32 32 H 0.96996 * 120.00044 * 35.11591 * 15 14 13 33 33 H 1.07991 * 119.55803 * 359.97438 * 19 18 16 34 34 H 1.07996 * 119.56481 * 179.71706 * 21 20 19 35 35 H 0.96701 * 116.99872 * 179.97438 * 25 23 22 36 36 H 1.08001 * 120.92228 * 359.97438 * 26 18 16 37 37 H 1.07989 * 120.07367 * 359.96162 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5047 0.1048 11 6 3.4578 -3.4389 0.0880 12 6 4.2069 -4.5941 0.1996 13 6 3.5792 -5.8194 0.3185 14 6 2.1917 -5.8925 0.3307 15 7 1.5570 -7.1327 0.4517 16 6 0.3979 -7.3626 -0.1965 17 8 -0.1382 -6.4669 -0.8193 18 6 -0.2216 -8.7040 -0.1498 19 6 0.3886 -9.7422 0.5582 20 7 -0.1593 -10.9392 0.6095 21 6 -1.2909 -11.2170 -0.0054 22 6 -1.9657 -10.2400 -0.7411 23 6 -3.2337 -10.5609 -1.4278 24 8 -3.8128 -9.7045 -2.0655 25 8 -3.7478 -11.8034 -1.3467 26 6 -1.4234 -8.9535 -0.8175 27 6 1.4364 -4.7332 0.2237 28 1 -0.4850 0.8401 -0.0004 29 1 3.9514 -2.4833 -0.0094 30 1 5.2855 -4.5399 0.1896 31 1 4.1675 -6.7212 0.4018 32 1 1.9510 -7.8275 1.0020 33 1 1.3199 -9.5601 1.0736 34 1 -1.7020 -12.2136 0.0598 35 1 -4.5797 -11.9656 -1.8124 36 1 -1.9195 -8.1744 -1.3771 37 1 0.3579 -4.7872 0.2333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610623485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:04 Heat of formation + Delta-G solvation = -104.839463 kcal Electronic energy + Delta-G solvation = -25689.544584 eV Core-core repulsion = 21590.071922 eV Total energy + Delta-G solvation = -4099.472662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.29079 -41.45389 -40.65606 -40.03924 -38.23904 -37.22965 -35.78643 -34.27892 -33.96650 -33.23863 -31.14842 -30.03485 -27.37721 -26.57959 -26.01786 -23.87665 -23.24688 -23.01116 -21.70435 -20.16015 -19.68735 -19.19537 -18.87299 -18.09019 -17.82579 -17.37065 -16.93542 -16.76919 -16.65354 -16.55541 -16.06780 -15.92872 -15.50922 -15.40224 -14.87670 -14.54342 -14.49813 -14.41612 -14.25580 -13.76136 -13.60335 -13.22068 -12.98687 -12.71670 -12.71344 -12.39077 -12.19042 -12.09216 -11.63698 -11.42396 -11.34689 -11.07345 -10.78867 -10.72260 -10.61780 -9.38064 -8.90266 -8.47185 -6.16734 -0.89732 -0.50405 0.43908 0.70394 1.20865 1.34354 1.43600 1.54087 1.61315 1.70364 1.92936 2.18136 2.54925 2.82661 2.99577 3.16347 3.29082 3.42284 3.49872 3.55712 3.75205 3.94467 4.14354 4.31983 4.36782 4.41626 4.64339 4.64826 4.73873 4.77284 5.01734 5.11132 5.12199 5.37561 5.40869 5.44380 5.63456 5.73889 6.02655 6.17709 6.28944 6.45286 6.83361 6.96212 6.97507 7.79652 8.76963 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002462 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.881379 B =11371.086440 C =12725.259651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.029 4.029 3 Si 1.024 2.976 4 H -0.245 1.245 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.108 0.892 9 O -0.237 6.237 10 C 0.124 3.876 11 C -0.252 4.252 12 C -0.049 4.049 13 C -0.197 4.197 14 C 0.180 3.820 15 N -0.641 5.641 16 C 0.556 3.444 17 O -0.556 6.556 18 C -0.200 4.200 19 C 0.192 3.808 20 N -0.493 5.493 21 C 0.204 3.796 22 C -0.194 4.194 23 C 0.543 3.457 24 O -0.547 6.547 25 O -0.492 6.492 26 C 0.034 3.966 27 C -0.213 4.213 28 H 0.272 0.728 29 H 0.123 0.877 30 H 0.162 0.838 31 H 0.171 0.829 32 H 0.432 0.568 33 H 0.208 0.792 34 H 0.213 0.787 35 H 0.440 0.560 36 H 0.136 0.864 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 -27.709 2.635 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.226 4.226 3 Si 0.843 3.157 4 H -0.168 1.168 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.125 0.875 9 O -0.143 6.143 10 C 0.073 3.927 11 C -0.272 4.272 12 C -0.067 4.067 13 C -0.217 4.217 14 C 0.086 3.914 15 N -0.289 5.289 16 C 0.344 3.656 17 O -0.433 6.433 18 C -0.205 4.205 19 C 0.034 3.966 20 N -0.200 5.200 21 C 0.047 3.953 22 C -0.197 4.197 23 C 0.387 3.613 24 O -0.439 6.439 25 O -0.306 6.306 26 C 0.007 3.993 27 C -0.235 4.235 28 H 0.081 0.919 29 H 0.141 0.859 30 H 0.180 0.820 31 H 0.188 0.812 32 H 0.274 0.726 33 H 0.224 0.776 34 H 0.229 0.771 35 H 0.303 0.697 36 H 0.154 0.846 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.393 -27.348 2.682 27.688 hybrid contribution -1.346 1.752 -0.881 2.378 sum 2.047 -25.596 1.801 25.741 Atomic orbital electron populations 1.70236 1.08322 1.28715 1.49102 1.26727 0.96863 1.03084 0.95882 0.84458 0.78412 0.74396 0.78443 1.16848 1.19586 1.19324 1.21961 0.92721 0.81209 1.52912 0.87469 1.83964 1.36293 1.12770 1.81299 1.19695 0.91804 0.87374 0.93837 1.21361 0.92399 1.00964 1.12446 1.21067 1.00677 0.90372 0.94607 1.20935 0.90728 0.99640 1.10381 1.17257 0.91848 0.83144 0.99151 1.42990 1.23027 1.14126 1.48713 1.18514 0.80723 0.87827 0.78503 1.90917 1.62462 1.46454 1.43503 1.20610 0.98618 0.94807 1.06509 1.23844 0.98020 0.85866 0.88829 1.68035 1.11327 1.20565 1.20099 1.23985 0.87410 0.99734 0.84222 1.20026 0.97058 0.95689 1.06933 1.20407 0.83909 0.80304 0.76700 1.90966 1.61630 1.49912 1.41356 1.84447 1.44995 1.29609 1.71554 1.21823 0.91510 0.95846 0.90081 1.20212 0.99630 0.90336 1.13280 0.91929 0.85916 0.82033 0.81166 0.72593 0.77601 0.77068 0.69721 0.84634 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.61 13.67 21.61 0.30 -59.32 16 2 C -0.03 -1.70 5.49 84.83 0.47 -1.23 16 3 Si 1.02 44.04 29.55 68.60 2.03 46.07 16 4 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.41 -24.83 9.49 67.92 0.64 -24.18 16 8 H 0.11 5.81 5.20 -2.91 -0.02 5.79 16 9 O -0.24 -15.16 9.75 -22.74 -0.22 -15.39 16 10 C 0.12 6.53 6.64 22.56 0.15 6.68 16 11 C -0.25 -10.86 9.17 22.42 0.21 -10.65 16 12 C -0.05 -1.52 10.03 22.23 0.22 -1.29 16 13 C -0.20 -5.36 9.96 22.43 0.22 -5.14 16 14 C 0.18 6.13 6.29 38.16 0.24 6.37 16 15 N -0.64 -15.68 5.28 -306.17 -1.62 -17.30 16 16 C 0.56 16.53 7.62 86.78 0.66 17.19 16 17 O -0.56 -23.74 13.85 -3.90 -0.05 -23.79 16 18 C -0.20 -4.22 5.88 -20.03 -0.12 -4.34 16 19 C 0.19 2.46 10.71 85.06 0.91 3.37 16 20 N -0.49 -6.32 10.33 -193.65 -2.00 -8.32 16 21 C 0.20 2.36 10.78 85.05 0.92 3.27 16 22 C -0.19 -3.33 5.88 -20.04 -0.12 -3.45 16 23 C 0.54 9.48 8.28 70.33 0.58 10.06 16 24 O -0.55 -14.55 17.20 19.93 0.34 -14.21 16 25 O -0.49 -3.95 12.70 -56.21 -0.71 -4.67 16 26 C 0.03 0.79 9.25 23.01 0.21 1.00 16 27 C -0.21 -10.13 8.64 22.52 0.19 -9.94 16 28 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 29 H 0.12 5.32 5.63 -2.91 -0.02 5.31 16 30 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.43 5.43 6.89 -92.71 -0.64 4.79 16 33 H 0.21 0.90 6.42 -2.92 -0.02 0.88 16 34 H 0.21 0.98 7.61 -2.91 -0.02 0.95 16 35 H 0.44 -0.05 9.11 -74.06 -0.67 -0.73 16 36 H 0.14 3.96 7.40 -2.91 -0.02 3.94 16 37 H 0.10 5.37 6.23 -2.92 -0.02 5.35 16 Total: -1.00 -94.48 336.69 3.33 -91.15 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -0.12 Total: 18.06 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 5.40 Total: -12.29 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -3.32 Total: -84.94 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -0.65 Total: -58.05 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -94.48 3.33 -91.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.693 kcal (2) G-P(sol) polarization free energy of solvation -94.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds