Wall clock time and date at job start Tue Mar 31 2020 15:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34767 * 116.99866 * 2 1 4 4 O 1.21527 * 120.00187 * 0.02562 * 3 2 1 5 5 C 1.47338 * 119.99843 * 179.97438 * 3 2 1 6 6 C 1.39905 * 120.06681 * 180.02562 * 5 3 2 7 7 C 1.36587 * 119.92776 * 180.02562 * 6 5 3 8 8 C 1.39322 * 120.07189 * 359.97438 * 7 6 5 9 9 S 1.76201 * 119.93193 * 179.97438 * 8 7 6 10 10 C 1.81403 * 103.00133 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47467 * 180.02562 * 10 9 8 12 12 C 1.38633 * 119.74509 * 269.73080 * 11 10 9 13 13 C 1.37623 * 120.25029 * 179.71921 * 12 11 10 14 14 C 1.40721 * 119.73674 * 0.56891 * 13 12 11 15 15 C 1.41398 * 120.23943 * 179.68518 * 14 13 12 16 16 H 1.08003 * 119.99649 * 204.40663 * 15 14 13 17 17 C 1.39946 * 120.00192 * 24.39882 * 15 14 13 18 18 N 1.30824 * 120.00067 * 17.85428 * 17 15 14 19 19 Si 1.86801 * 120.00039 * 197.84770 * 17 15 14 20 20 H 1.48503 * 109.46985 * 90.00577 * 19 17 15 21 21 H 1.48496 * 109.47214 * 210.00273 * 19 17 15 22 22 H 1.48494 * 109.47179 * 330.00745 * 19 17 15 23 23 C 1.40714 * 119.51725 * 359.69976 * 14 13 12 24 24 C 1.37615 * 119.74208 * 0.02562 * 23 14 13 25 25 C 1.39323 * 120.13841 * 0.26107 * 8 7 6 26 26 C 1.36591 * 120.06746 * 359.47510 * 25 8 7 27 27 H 1.09004 * 109.47164 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47738 * 300.00061 * 1 2 3 29 29 H 1.09002 * 109.47382 * 59.99929 * 1 2 3 30 30 H 1.07996 * 120.03245 * 359.97438 * 6 5 3 31 31 H 1.07997 * 119.96704 * 179.97438 * 7 6 5 32 32 H 1.09009 * 109.46830 * 300.00323 * 10 9 8 33 33 H 1.09004 * 109.46983 * 59.99744 * 10 9 8 34 34 H 1.08007 * 119.87872 * 359.96996 * 12 11 10 35 35 H 1.07993 * 120.13543 * 180.27348 * 13 12 11 36 36 H 0.96993 * 120.00218 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.12645 * 179.97438 * 23 14 13 38 38 H 1.07999 * 119.87631 * 179.97438 * 24 23 14 39 39 H 1.08002 * 119.96555 * 179.74502 * 25 8 7 40 40 H 1.08001 * 120.03442 * 180.23711 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4019 2.2200 0.0005 5 6 3.5351 1.2779 0.0006 6 6 4.1717 2.5237 0.0011 7 6 5.5359 2.5919 0.0011 8 6 6.2933 1.4225 0.0011 9 16 8.0529 1.5148 0.0004 10 6 8.5530 -0.2290 -0.0001 11 6 10.0572 -0.3202 -0.0001 12 6 10.7434 -0.3671 -1.2038 13 6 12.1174 -0.4447 -1.2159 14 6 12.8248 -0.4885 -0.0002 15 6 14.2361 -0.5750 -0.0003 16 1 14.7515 -0.9941 0.8513 17 6 14.9652 -0.1177 -1.1039 18 7 14.4067 0.6914 -1.9671 19 14 16.7358 -0.6624 -1.3444 20 1 16.7652 -1.9066 -2.1546 21 1 17.4906 0.4049 -2.0488 22 1 17.3589 -0.9185 -0.0211 23 6 12.1174 -0.4459 1.2154 24 6 10.7439 -0.3626 1.2035 25 6 5.6623 0.1804 -0.0044 26 6 4.2985 0.1056 0.0011 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.5851 3.4305 0.0007 31 1 6.0280 3.5532 0.0011 32 1 8.1595 -0.7200 0.8900 33 1 8.1588 -0.7197 -0.8901 34 1 10.1980 -0.3386 -2.1356 35 1 12.6503 -0.4767 -2.1546 36 1 14.9121 1.0086 -2.7317 37 1 12.6504 -0.4793 2.1541 38 1 10.1987 -0.3302 2.1352 39 1 6.2522 -0.7243 -0.0085 40 1 3.8100 -0.8576 0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544073708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:35 Heat of formation + Delta-G solvation = -51.325434 kcal Electronic energy + Delta-G solvation = -22878.245620 eV Core-core repulsion = 19327.386715 eV Total energy + Delta-G solvation = -3550.858905 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71205 -38.85903 -37.77501 -36.60592 -34.16374 -31.83122 -31.64943 -31.06720 -29.45559 -28.03288 -27.69705 -24.58674 -24.08414 -22.61425 -21.16745 -21.15731 -20.19986 -18.33257 -17.58641 -17.45905 -17.02976 -16.56873 -15.49724 -15.17600 -15.06391 -14.66429 -14.44751 -14.19487 -14.01736 -13.75789 -13.62510 -13.59894 -13.00989 -12.67754 -12.48262 -12.33521 -12.26923 -12.10069 -11.64298 -11.34077 -11.21397 -11.16574 -11.07708 -10.78843 -10.68539 -10.57316 -9.99019 -9.85363 -9.78356 -9.54188 -9.29646 -9.26543 -7.63714 -7.46742 -7.28667 -6.93288 -4.51254 0.42933 1.25240 1.54405 2.31483 2.46448 2.51959 2.82928 2.94008 2.99237 3.02051 3.22013 3.58459 3.80677 4.47782 4.51550 4.66176 4.74201 4.80997 4.88120 5.14344 5.18810 5.29914 5.35700 5.41935 5.46539 5.59472 5.80539 5.91343 5.96899 6.09960 6.12145 6.17952 6.21225 6.23345 6.59785 6.80702 6.90639 7.09658 7.18184 7.44194 7.52747 7.66214 7.88854 7.91373 8.11834 8.46667 8.71347 8.79089 10.00059 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.039971 B = 0.001894 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.339665 B =14778.842328 C =14960.364009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.513 3.487 4 O -0.514 6.514 5 C -0.158 4.158 6 C -0.031 4.031 7 C -0.125 4.125 8 C -0.041 4.041 9 S -0.108 6.108 10 C -0.026 4.026 11 C -0.221 4.221 12 C -0.077 4.077 13 C -0.168 4.168 14 C 0.118 3.882 15 C -0.452 4.452 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.782 5.782 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.227 4.227 24 C -0.064 4.064 25 C -0.157 4.157 26 C -0.035 4.035 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.284 0.716 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.891 -1.523 1.442 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.359 3.641 4 O -0.403 6.403 5 C -0.163 4.163 6 C -0.051 4.051 7 C -0.149 4.149 8 C -0.156 4.156 9 S 0.147 5.853 10 C -0.173 4.173 11 C -0.226 4.226 12 C -0.097 4.097 13 C -0.188 4.188 14 C 0.114 3.886 15 C -0.481 4.481 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.406 5.406 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.247 4.247 24 C -0.085 4.085 25 C -0.182 4.182 26 C -0.056 4.056 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.152 0.848 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.242 -0.115 1.226 17.286 hybrid contribution -0.285 -1.116 -0.192 1.168 sum -17.527 -1.232 1.034 17.600 Atomic orbital electron populations 1.23265 0.76114 1.03708 1.02594 1.86559 1.23463 1.32829 1.84486 1.21167 0.89182 0.81294 0.72410 1.90830 1.66918 1.36003 1.46590 1.18976 0.88640 0.95074 1.13642 1.20881 0.94124 0.96618 0.93486 1.20518 0.92909 0.97592 1.03900 1.22747 0.99920 0.96111 0.96811 1.86470 0.94052 1.16596 1.88201 1.22412 0.98671 0.92093 1.04081 1.18304 0.89771 1.20222 0.94265 1.20529 0.94722 0.99396 0.95044 1.21303 0.92067 1.06573 0.98820 1.17705 0.93304 0.86601 0.90984 1.19724 0.91605 1.34830 1.01911 0.90059 1.25993 1.01199 0.92599 0.94743 1.69818 1.38849 1.21342 1.10584 0.86252 0.81170 0.79342 0.79697 1.19104 1.20150 1.18458 1.20961 0.93143 1.13494 0.97133 1.20383 0.94298 0.98614 0.95162 1.21000 0.94995 0.96894 1.05282 1.21068 0.93433 0.97828 0.93226 0.88003 0.91861 0.91866 0.84423 0.84595 0.90171 0.90120 0.89202 0.86210 0.90503 0.88666 0.89165 0.84833 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.33 16 2 O -0.36 -3.70 9.80 -40.67 -0.40 -4.10 16 3 C 0.51 6.31 7.88 34.43 0.27 6.58 16 4 O -0.51 -7.34 16.13 -19.29 -0.31 -7.65 16 5 C -0.16 -1.91 5.88 -104.95 -0.62 -2.52 16 6 C -0.03 -0.36 9.54 -39.55 -0.38 -0.74 16 7 C -0.12 -1.55 9.73 -39.77 -0.39 -1.94 16 8 C -0.04 -0.56 6.13 -38.78 -0.24 -0.80 16 9 S -0.11 -1.73 21.90 -107.50 -2.35 -4.09 16 10 C -0.03 -0.42 4.45 36.00 0.16 -0.26 16 11 C -0.22 -4.45 5.16 -104.33 -0.54 -4.98 16 12 C -0.08 -1.68 9.67 -39.66 -0.38 -2.06 16 13 C -0.17 -4.13 8.70 -38.87 -0.34 -4.46 16 14 C 0.12 2.97 5.58 -106.82 -0.60 2.37 16 15 C -0.45 -11.34 9.05 -37.74 -0.34 -11.68 16 16 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 17 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 18 N -0.78 -19.25 10.95 55.55 0.61 -18.64 16 19 Si 0.91 17.67 29.60 -169.99 -5.03 12.64 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 C -0.23 -5.27 9.80 -38.87 -0.38 -5.65 16 24 C -0.06 -1.35 9.67 -39.66 -0.38 -1.73 16 25 C -0.16 -1.91 9.30 -39.77 -0.37 -2.28 16 26 C -0.04 -0.39 9.56 -39.56 -0.38 -0.77 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.14 1.48 7.64 -52.49 -0.40 1.08 16 31 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.08 1.16 7.69 -51.92 -0.40 0.76 16 33 H 0.08 1.18 7.67 -51.92 -0.40 0.79 16 34 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 35 H 0.12 3.04 6.15 -52.49 -0.32 2.72 16 36 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 37 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.13 1.49 5.86 -52.49 -0.31 1.18 16 40 H 0.14 1.24 7.60 -52.49 -0.40 0.84 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -27.49 360.97 -10.70 -38.19 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.74 Total: 6.13 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -3.92 Total: -27.93 kcal Atomic # 7 Polarization: -19.25 SS G_CDS: 0.61 Total: -18.64 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.71 Total: -11.74 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.35 Total: -4.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.49 -10.70 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544073708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.137 kcal (2) G-P(sol) polarization free energy of solvation -27.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds