Wall clock time and date at job start Tue Mar 31 2020 15:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34767 * 116.99866 * 2 1 4 4 O 1.21527 * 120.00187 * 0.02562 * 3 2 1 5 5 C 1.47338 * 119.99843 * 179.97438 * 3 2 1 6 6 C 1.39905 * 120.06681 * 180.02562 * 5 3 2 7 7 C 1.36587 * 119.92776 * 180.02562 * 6 5 3 8 8 C 1.39322 * 120.07189 * 359.97438 * 7 6 5 9 9 S 1.76201 * 119.93193 * 179.97438 * 8 7 6 10 10 C 1.81403 * 103.00133 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47467 * 180.02562 * 10 9 8 12 12 C 1.38633 * 119.74509 * 269.73080 * 11 10 9 13 13 C 1.37623 * 120.25029 * 179.71921 * 12 11 10 14 14 C 1.40721 * 119.73674 * 0.56891 * 13 12 11 15 15 C 1.41398 * 120.23943 * 179.68518 * 14 13 12 16 16 H 1.08003 * 119.99649 * 204.40663 * 15 14 13 17 17 C 1.39946 * 120.00192 * 24.39882 * 15 14 13 18 18 N 1.30824 * 120.00067 * 17.85428 * 17 15 14 19 19 Si 1.86801 * 120.00039 * 197.84770 * 17 15 14 20 20 H 1.48503 * 109.46985 * 90.00577 * 19 17 15 21 21 H 1.48496 * 109.47214 * 210.00273 * 19 17 15 22 22 H 1.48494 * 109.47179 * 330.00745 * 19 17 15 23 23 C 1.40714 * 119.51725 * 359.69976 * 14 13 12 24 24 C 1.37615 * 119.74208 * 0.02562 * 23 14 13 25 25 C 1.39323 * 120.13841 * 0.26107 * 8 7 6 26 26 C 1.36591 * 120.06746 * 359.47510 * 25 8 7 27 27 H 1.09004 * 109.47164 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47738 * 300.00061 * 1 2 3 29 29 H 1.09002 * 109.47382 * 59.99929 * 1 2 3 30 30 H 1.07996 * 120.03245 * 359.97438 * 6 5 3 31 31 H 1.07997 * 119.96704 * 179.97438 * 7 6 5 32 32 H 1.09009 * 109.46830 * 300.00323 * 10 9 8 33 33 H 1.09004 * 109.46983 * 59.99744 * 10 9 8 34 34 H 1.08007 * 119.87872 * 359.96996 * 12 11 10 35 35 H 1.07993 * 120.13543 * 180.27348 * 13 12 11 36 36 H 0.96993 * 120.00218 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.12645 * 179.97438 * 23 14 13 38 38 H 1.07999 * 119.87631 * 179.97438 * 24 23 14 39 39 H 1.08002 * 119.96555 * 179.74502 * 25 8 7 40 40 H 1.08001 * 120.03442 * 180.23711 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4019 2.2200 0.0005 5 6 3.5351 1.2779 0.0006 6 6 4.1717 2.5237 0.0011 7 6 5.5359 2.5919 0.0011 8 6 6.2933 1.4225 0.0011 9 16 8.0529 1.5148 0.0004 10 6 8.5530 -0.2290 -0.0001 11 6 10.0572 -0.3202 -0.0001 12 6 10.7434 -0.3671 -1.2038 13 6 12.1174 -0.4447 -1.2159 14 6 12.8248 -0.4885 -0.0002 15 6 14.2361 -0.5750 -0.0003 16 1 14.7515 -0.9941 0.8513 17 6 14.9652 -0.1177 -1.1039 18 7 14.4067 0.6914 -1.9671 19 14 16.7358 -0.6624 -1.3444 20 1 16.7652 -1.9066 -2.1546 21 1 17.4906 0.4049 -2.0488 22 1 17.3589 -0.9185 -0.0211 23 6 12.1174 -0.4459 1.2154 24 6 10.7439 -0.3626 1.2035 25 6 5.6623 0.1804 -0.0044 26 6 4.2985 0.1056 0.0011 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.5851 3.4305 0.0007 31 1 6.0280 3.5532 0.0011 32 1 8.1595 -0.7200 0.8900 33 1 8.1588 -0.7197 -0.8901 34 1 10.1980 -0.3386 -2.1356 35 1 12.6503 -0.4767 -2.1546 36 1 14.9121 1.0086 -2.7317 37 1 12.6504 -0.4793 2.1541 38 1 10.1987 -0.3302 2.1352 39 1 6.2522 -0.7243 -0.0085 40 1 3.8100 -0.8576 0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544073708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:35 Heat of formation + Delta-G solvation = -61.636027 kcal Electronic energy + Delta-G solvation = -22878.692721 eV Core-core repulsion = 19327.386715 eV Total energy + Delta-G solvation = -3551.306006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61482 -39.78464 -39.50385 -37.49948 -35.88581 -33.22564 -32.63576 -32.24461 -31.21037 -29.33702 -28.66676 -25.96274 -25.25213 -23.62051 -22.92714 -22.06056 -21.86134 -19.25736 -19.24497 -18.61002 -17.97478 -17.39596 -17.21203 -16.29298 -16.19192 -15.83974 -15.72679 -15.63781 -15.52314 -14.71035 -14.62085 -14.50002 -14.27538 -14.11516 -13.83946 -13.66357 -13.54350 -13.19525 -13.02921 -12.86436 -12.76065 -12.34313 -12.20253 -12.18826 -11.82845 -11.72228 -11.53093 -11.31816 -11.18946 -10.98960 -10.84163 -10.21104 -9.39697 -9.22427 -8.67757 -8.47484 -6.36258 -0.53613 0.24820 0.33199 1.05733 1.14380 1.36685 1.38626 1.43992 1.51849 1.68403 1.69809 2.19472 2.64600 2.73262 3.63511 3.72658 3.79519 3.85977 4.06925 4.08531 4.22237 4.30758 4.34200 4.36701 4.49251 4.51900 4.57601 4.65194 4.71031 4.92741 5.02976 5.04669 5.12818 5.16592 5.20730 5.31662 5.32850 5.41324 5.66997 5.67039 5.90895 6.07480 6.15215 6.34657 6.63243 6.66517 6.90251 6.99053 8.28449 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.039971 B = 0.001894 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.339665 B =14778.842328 C =14960.364009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.515 3.485 4 O -0.539 6.539 5 C -0.162 4.162 6 C -0.033 4.033 7 C -0.126 4.126 8 C -0.050 4.050 9 S -0.139 6.139 10 C -0.021 4.021 11 C -0.206 4.206 12 C -0.082 4.082 13 C -0.193 4.193 14 C 0.084 3.916 15 C -0.493 4.493 16 H 0.078 0.922 17 C 0.035 3.965 18 N -0.819 5.819 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.269 1.269 22 H -0.258 1.258 23 C -0.244 4.244 24 C -0.068 4.068 25 C -0.156 4.156 26 C -0.028 4.028 27 H 0.135 0.865 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.290 0.710 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.147 0.853 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.214 -2.415 1.752 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.362 3.638 4 O -0.431 6.431 5 C -0.167 4.167 6 C -0.053 4.053 7 C -0.150 4.150 8 C -0.164 4.164 9 S 0.113 5.887 10 C -0.167 4.167 11 C -0.209 4.209 12 C -0.102 4.102 13 C -0.212 4.212 14 C 0.081 3.919 15 C -0.522 4.522 16 H 0.096 0.904 17 C -0.181 4.181 18 N -0.444 5.444 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.193 1.193 22 H -0.181 1.181 23 C -0.264 4.264 24 C -0.088 4.088 25 C -0.180 4.180 26 C -0.048 4.048 27 H 0.153 0.847 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.164 0.836 31 H 0.161 0.839 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.165 0.835 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.578 -1.036 1.545 19.666 hybrid contribution 0.000 -0.816 -0.239 0.850 sum -19.578 -1.851 1.305 19.709 Atomic orbital electron populations 1.23597 0.74226 1.05944 1.02654 1.86544 1.25296 1.31605 1.83865 1.21211 0.89247 0.81511 0.71798 1.90821 1.67458 1.36939 1.47873 1.19172 0.88898 0.95529 1.13071 1.20991 0.93908 0.97184 0.93245 1.20627 0.93107 0.97770 1.03475 1.22622 0.97856 0.97223 0.98672 1.86487 0.96905 1.15685 1.89587 1.22342 0.95594 0.92583 1.06214 1.18658 0.92217 1.16858 0.93173 1.20779 0.93911 0.98789 0.96750 1.21274 0.93358 1.08558 0.98048 1.18041 0.94002 0.87819 0.91999 1.19925 0.92184 1.37065 1.03071 0.90402 1.26793 1.05290 0.92019 0.93995 1.69871 1.40671 1.22516 1.11373 0.85185 0.75886 0.78974 0.79600 1.18592 1.19311 1.18144 1.21165 0.94468 1.14021 0.96715 1.20712 0.93602 0.97633 0.96832 1.21191 0.95525 0.96731 1.04564 1.21281 0.92961 0.98547 0.92013 0.84724 0.91823 0.91865 0.83624 0.83863 0.87829 0.88307 0.87412 0.88042 0.89961 0.88291 0.86255 0.83498 0.82104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.36 -6.41 9.80 -56.78 -0.56 -6.96 16 3 C 0.52 11.53 7.88 70.22 0.55 12.08 16 4 O -0.54 -14.57 16.13 19.75 0.32 -14.26 16 5 C -0.16 -3.49 5.88 -20.08 -0.12 -3.61 16 6 C -0.03 -0.71 9.54 22.29 0.21 -0.50 16 7 C -0.13 -2.87 9.73 22.14 0.22 -2.66 16 8 C -0.05 -1.23 6.13 22.79 0.14 -1.09 16 9 S -0.14 -4.16 21.90 -56.49 -1.24 -5.40 16 10 C -0.02 -0.61 4.45 71.23 0.32 -0.29 16 11 C -0.21 -7.97 5.16 -19.68 -0.10 -8.07 16 12 C -0.08 -3.59 9.67 22.22 0.21 -3.38 16 13 C -0.19 -9.82 8.70 22.73 0.20 -9.62 16 14 C 0.08 4.44 5.58 -21.29 -0.12 4.32 16 15 C -0.49 -25.98 9.05 23.46 0.21 -25.76 16 16 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 17 C 0.03 1.72 5.14 85.26 0.44 2.16 16 18 N -0.82 -42.06 10.95 21.83 0.24 -41.82 16 19 Si 0.98 37.21 29.60 68.60 2.03 39.24 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 21 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 23 C -0.24 -11.53 9.80 22.73 0.22 -11.30 16 24 C -0.07 -2.77 9.67 22.22 0.21 -2.56 16 25 C -0.16 -3.27 9.30 22.15 0.21 -3.06 16 26 C -0.03 -0.53 9.56 22.29 0.21 -0.31 16 27 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.15 2.89 7.64 -2.91 -0.02 2.87 16 31 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.10 2.57 7.69 -2.39 -0.02 2.55 16 33 H 0.10 2.55 7.67 -2.39 -0.02 2.53 16 34 H 0.11 4.21 8.06 -2.91 -0.02 4.18 16 35 H 0.10 5.45 6.15 -2.91 -0.02 5.43 16 36 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 37 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.15 2.66 5.86 -2.91 -0.02 2.64 16 40 H 0.16 2.25 7.60 -2.91 -0.02 2.22 16 Total: -1.00 -61.49 360.97 6.07 -55.41 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 1.06 Total: 25.91 kcal Atomic # 6 Polarization: -56.35 SS G_CDS: 4.22 Total: -52.13 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.24 Total: -41.82 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.24 Total: -21.22 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -1.24 Total: -5.40 kcal Total: -61.49 6.07 -55.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544073708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.221 kcal (2) G-P(sol) polarization free energy of solvation -61.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds